Wall clock time and date at job start Mon Mar 30 2020 07:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35884 * 117.00013 * 2 1 4 4 C 1.39872 * 119.58341 * 359.72784 * 3 2 1 5 5 C 1.35978 * 120.91201 * 179.75373 * 4 3 2 6 6 C 1.40584 * 119.75808 * 0.49317 * 5 4 3 7 7 C 1.40526 * 121.22170 * 179.77946 * 6 5 4 8 8 C 1.36103 * 119.69610 * 180.09445 * 7 6 5 9 9 C 1.39380 * 120.97512 * 359.95799 * 8 7 6 10 10 C 1.36064 * 120.95951 * 0.02562 * 9 8 7 11 11 C 1.40544 * 119.72165 * 359.97438 * 10 9 8 12 12 C 1.36534 * 119.58718 * 179.97438 * 3 2 1 13 13 C 1.50688 * 120.06706 * 359.93969 * 12 3 2 14 14 C 1.53098 * 109.33832 * 150.34160 * 13 12 3 15 15 C 1.50697 * 120.06454 * 180.02562 * 10 9 8 16 16 H 1.08994 * 109.48801 * 89.52023 * 15 10 9 17 17 C 1.50699 * 109.48920 * 329.47182 * 15 10 9 18 18 H 1.08005 * 120.00088 * 324.87016 * 17 15 10 19 19 C 1.37872 * 119.99808 * 144.86359 * 17 15 10 20 20 N 1.31515 * 120.00295 * 5.07459 * 19 17 15 21 21 Si 1.86804 * 120.00152 * 185.07546 * 19 17 15 22 22 H 1.48494 * 109.47007 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47073 * 120.00326 * 21 19 17 24 24 H 1.48496 * 109.46965 * 240.00069 * 21 19 17 25 25 H 1.09001 * 109.47175 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47570 * 299.99715 * 1 2 3 27 27 H 1.09003 * 109.47441 * 59.99996 * 1 2 3 28 28 H 1.07999 * 119.53845 * 359.97438 * 4 3 2 29 29 H 1.07999 * 120.12316 * 180.26388 * 5 4 3 30 30 H 1.08002 * 120.14636 * 0.11282 * 7 6 5 31 31 H 1.07998 * 119.50554 * 179.97438 * 8 7 6 32 32 H 1.08006 * 119.51912 * 179.97438 * 9 8 7 33 33 H 1.08998 * 109.49212 * 270.32354 * 13 12 3 34 34 H 1.09004 * 109.49109 * 30.39649 * 13 12 3 35 35 H 1.08997 * 109.52211 * 298.57546 * 14 13 12 36 36 H 1.08996 * 109.50515 * 178.43358 * 14 13 12 37 37 H 0.97002 * 120.00500 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2756 2.3782 -0.0058 5 6 1.8646 3.6038 -0.0009 6 6 3.2669 3.7040 -0.0004 7 6 3.9078 4.9546 -0.0001 8 6 5.2675 5.0155 -0.0016 9 6 6.0375 3.8537 -0.0026 10 6 5.4517 2.6256 -0.0026 11 6 4.0501 2.5222 -0.0011 12 6 3.4098 1.2724 0.0005 13 6 4.2229 0.0036 0.0025 14 6 5.5537 0.2532 -0.7121 15 6 6.3038 1.3827 -0.0031 16 1 6.5168 1.0875 1.0243 17 6 7.5971 1.6601 -0.7251 18 1 7.6085 2.3241 -1.5768 19 6 8.7659 1.0663 -0.2982 20 7 8.7370 0.1817 0.6746 21 14 10.3907 1.5181 -1.1016 22 1 10.1539 2.5301 -2.1622 23 1 11.3095 2.0794 -0.0788 24 1 11.0004 0.3045 -1.7020 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 0.1981 2.3052 -0.0106 29 1 1.2575 4.4970 -0.0012 30 1 3.3240 5.8633 0.0016 31 1 5.7568 5.9782 -0.0017 32 1 7.1149 3.9294 -0.0042 33 1 4.4138 -0.3044 1.0304 34 1 3.6731 -0.7815 -0.5167 35 1 5.3637 0.5373 -1.7471 36 1 6.1557 -0.6551 -0.6879 37 1 9.5593 -0.2363 0.9747 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000034417181.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:20:21 Heat of formation + Delta-G solvation = -25.785286 kcal Electronic energy + Delta-G solvation = -20127.910393 eV Core-core repulsion = 17219.678837 eV Total energy + Delta-G solvation = -2908.231556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86414 -39.83565 -37.34495 -36.49037 -34.54015 -31.81388 -31.32862 -30.56466 -28.49236 -27.20983 -25.68444 -23.74555 -23.19634 -23.08168 -19.99336 -19.21291 -18.45480 -17.82661 -17.46568 -16.64811 -16.50393 -16.25061 -15.74947 -15.28128 -14.78675 -14.40702 -14.23060 -14.12106 -13.87567 -13.84465 -13.33427 -13.12373 -12.87466 -12.69516 -12.51920 -12.39513 -12.20130 -12.13560 -11.84743 -11.71429 -11.32203 -11.02245 -10.80150 -10.51320 -10.18481 -9.16793 -8.34385 -8.11875 -6.24205 -0.22705 0.22838 1.26615 1.39283 1.41203 1.53218 2.18960 2.41980 2.48943 3.14084 3.29978 3.73169 3.92661 4.07690 4.15004 4.30173 4.40535 4.45920 4.46942 4.50313 4.54169 4.60758 4.64800 4.70824 4.77462 4.99704 5.05241 5.14436 5.23354 5.32306 5.41459 5.43647 5.48180 5.56485 5.63357 5.75571 5.80671 5.95330 6.12321 6.27322 6.41034 6.56092 6.89082 7.41920 8.94694 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.022806 B = 0.006420 C = 0.005161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.478664 B = 4360.218719 C = 5423.711994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.337 6.337 3 C 0.111 3.889 4 C -0.188 4.188 5 C -0.068 4.068 6 C -0.097 4.097 7 C -0.113 4.113 8 C -0.126 4.126 9 C -0.122 4.122 10 C -0.073 4.073 11 C -0.039 4.039 12 C -0.135 4.135 13 C -0.061 4.061 14 C -0.088 4.088 15 C 0.068 3.932 16 H 0.030 0.970 17 C -0.514 4.514 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.926 5.926 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.281 1.281 25 H 0.115 0.885 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.164 0.836 29 H 0.169 0.831 30 H 0.162 0.838 31 H 0.144 0.856 32 H 0.112 0.888 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.039 0.961 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.155 6.489 -1.053 18.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.251 6.251 3 C 0.066 3.934 4 C -0.206 4.206 5 C -0.086 4.086 6 C -0.097 4.097 7 C -0.130 4.130 8 C -0.144 4.144 9 C -0.141 4.141 10 C -0.073 4.073 11 C -0.040 4.040 12 C -0.136 4.136 13 C -0.098 4.098 14 C -0.126 4.126 15 C 0.049 3.951 16 H 0.048 0.952 17 C -0.552 4.552 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.565 5.565 21 Si 0.780 3.220 22 H -0.189 1.189 23 H -0.203 1.203 24 H -0.207 1.207 25 H 0.133 0.867 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.181 0.819 29 H 0.186 0.814 30 H 0.179 0.821 31 H 0.162 0.838 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.968 6.172 -0.955 18.080 hybrid contribution 1.334 -0.320 -0.198 1.386 sum -15.634 5.852 -1.152 16.733 Atomic orbital electron populations 1.23353 0.76538 1.05415 1.02385 1.86071 1.23444 1.26702 1.88898 1.18523 0.90952 0.85444 0.98458 1.21268 1.01295 0.91323 1.06682 1.21202 0.92284 0.98668 0.96441 1.18395 0.94508 0.92915 1.03900 1.21217 0.94561 0.96652 1.00608 1.21120 0.94599 0.98169 1.00530 1.20969 1.00507 0.92362 1.00217 1.20409 0.92516 0.97216 0.97203 1.17887 0.93028 0.92737 1.00304 1.19079 0.91837 0.94938 1.07697 1.20272 0.95118 0.94414 1.00038 1.21430 0.94173 0.99117 0.97928 1.17794 0.91941 0.89015 0.96312 0.95220 1.21288 0.92706 1.27170 1.14024 0.93001 1.25767 1.02512 0.94615 0.95570 1.70078 1.28533 1.28182 1.29740 0.85545 0.79575 0.78244 0.78594 1.18913 1.20330 1.20680 0.86694 0.91436 0.91436 0.81868 0.81356 0.82084 0.83807 0.87018 0.92735 0.90764 0.94519 0.94182 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 9.80 113.37 1.11 1.40 16 2 O -0.34 -9.95 9.44 -92.24 -0.87 -10.82 16 3 C 0.11 3.66 6.61 22.27 0.15 3.81 16 4 C -0.19 -4.74 8.94 22.14 0.20 -4.54 16 5 C -0.07 -1.73 9.76 22.32 0.22 -1.51 16 6 C -0.10 -3.26 5.74 -21.28 -0.12 -3.38 16 7 C -0.11 -3.31 9.77 22.33 0.22 -3.09 16 8 C -0.13 -4.21 9.95 22.05 0.22 -3.99 16 9 C -0.12 -5.32 8.97 22.04 0.20 -5.12 16 10 C -0.07 -3.49 5.48 -19.81 -0.11 -3.60 16 11 C -0.04 -1.66 5.66 -21.31 -0.12 -1.79 16 12 C -0.13 -5.49 5.69 -19.73 -0.11 -5.60 16 13 C -0.06 -2.67 5.62 29.88 0.17 -2.50 16 14 C -0.09 -4.42 5.20 30.63 0.16 -4.26 16 15 C 0.07 3.66 2.36 -12.29 -0.03 3.63 16 16 H 0.03 1.82 7.38 -2.39 -0.02 1.81 16 17 C -0.51 -29.15 6.78 25.60 0.17 -28.98 16 18 H 0.05 2.93 7.63 -2.91 -0.02 2.91 16 19 C 0.01 0.78 5.45 84.65 0.46 1.25 16 20 N -0.93 -55.58 12.84 21.45 0.28 -55.30 16 21 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.07 0.94 7.65 -2.39 -0.02 0.92 16 27 H 0.07 0.94 7.62 -2.39 -0.02 0.92 16 28 H 0.16 2.71 6.22 -2.91 -0.02 2.69 16 29 H 0.17 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 31 H 0.14 3.76 8.06 -2.91 -0.02 3.74 16 32 H 0.11 5.16 6.95 -2.91 -0.02 5.14 16 33 H 0.05 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.07 2.96 7.49 -2.38 -0.02 2.94 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.04 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -69.63 300.88 5.28 -64.36 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: 1.07 Total: 13.57 kcal Atomic # 6 Polarization: -61.04 SS G_CDS: 2.78 Total: -58.26 kcal Atomic # 7 Polarization: -55.58 SS G_CDS: 0.28 Total: -55.30 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: -0.87 Total: -10.82 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -69.63 5.28 -64.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000034417181.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.570 kcal (2) G-P(sol) polarization free energy of solvation -69.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.355 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds