Wall clock time and date at job start Mon Mar 30 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99954 * 2 1 4 4 H 1.48493 * 109.47221 * 270.00330 * 3 2 1 5 5 H 1.48504 * 109.46930 * 30.00457 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00276 * 3 2 1 7 7 C 1.37876 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47245 * 180.02562 * 9 7 2 11 11 O 1.42892 * 109.47258 * 180.02562 * 10 9 7 12 12 C 1.35875 * 117.00221 * 180.02562 * 11 10 9 13 13 C 1.38836 * 119.93522 * 179.97438 * 12 11 10 14 14 C 1.37911 * 120.06313 * 180.02562 * 13 12 11 15 15 C 1.39369 * 119.93490 * 359.97438 * 14 13 12 16 16 C 1.48365 * 120.06665 * 179.97438 * 15 14 13 17 17 C 1.39353 * 120.12218 * 179.97438 * 16 15 14 18 18 C 1.38018 * 119.86951 * 180.02562 * 17 16 15 19 19 C 1.38325 * 120.12682 * 359.97438 * 18 17 16 20 20 C 1.38323 * 120.24425 * 0.26110 * 19 18 17 21 21 C 1.38018 * 120.12331 * 359.48376 * 20 19 18 22 22 C 1.39383 * 119.87059 * 0.25036 * 15 14 13 23 23 C 1.37898 * 119.93291 * 359.53659 * 22 15 14 24 24 H 0.96994 * 120.00250 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46908 * 60.00001 * 9 7 2 26 26 H 1.08998 * 109.46687 * 300.00299 * 9 7 2 27 27 H 1.08999 * 109.47656 * 59.99375 * 10 9 7 28 28 H 1.09003 * 109.47002 * 299.99958 * 10 9 7 29 29 H 1.07999 * 119.96893 * 359.97438 * 13 12 11 30 30 H 1.07996 * 120.02689 * 179.97438 * 14 13 12 31 31 H 1.07998 * 120.06363 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.93255 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.87397 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.93431 * 179.74857 * 20 19 18 35 35 H 1.07997 * 120.05795 * 180.26034 * 21 20 19 36 36 H 1.08001 * 120.02844 * 179.72693 * 22 15 14 37 37 H 1.08001 * 119.96909 * 180.18969 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5309 -4.8996 -0.0011 12 6 2.2709 -6.0391 -0.0007 13 6 1.6392 -7.2755 -0.0007 14 6 2.3877 -8.4337 0.0003 15 6 3.7796 -8.3623 0.0008 16 6 4.5877 -9.6066 0.0025 17 6 5.9795 -9.5365 0.0024 18 6 6.7262 -10.6973 0.0034 19 6 6.0956 -11.9284 0.0050 20 6 4.7144 -12.0038 0.0002 21 6 3.9577 -10.8495 0.0045 22 6 4.4109 -7.1197 0.0055 23 6 3.6572 -5.9649 0.0001 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.5606 -7.3302 -0.0006 30 1 1.8958 -9.3951 0.0007 31 1 6.4729 -8.5758 0.0016 32 1 7.8048 -10.6442 0.0038 33 1 6.6839 -12.8341 0.0054 34 1 4.2273 -12.9677 -0.0027 35 1 2.8794 -10.9096 0.0049 36 1 5.4894 -7.0614 0.0104 37 1 4.1458 -5.0018 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035150048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:16 Heat of formation + Delta-G solvation = -3.220282 kcal Electronic energy + Delta-G solvation = -18305.930895 eV Core-core repulsion = 15398.677831 eV Total energy + Delta-G solvation = -2907.253064 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.10451 -39.04265 -37.00908 -33.45931 -32.22562 -31.57953 -30.65864 -30.14884 -28.03666 -25.17228 -23.59981 -23.18498 -21.88818 -20.98453 -20.32538 -18.21876 -17.18510 -16.11281 -16.01831 -15.68608 -15.37509 -14.66992 -14.47372 -14.35372 -14.08956 -13.88497 -13.36513 -13.10610 -12.86909 -12.59284 -12.37339 -12.02368 -11.56645 -11.52773 -11.17861 -11.08000 -10.93111 -10.69848 -10.42415 -10.00236 -9.69198 -9.32846 -9.20484 -9.12139 -8.92551 -8.46978 -7.53654 -6.12571 -4.17450 0.71878 1.23793 1.46338 1.96359 3.25977 3.31963 3.34650 3.57809 3.77582 4.08886 4.38941 4.58124 4.61782 4.77741 4.85992 5.02925 5.06363 5.23916 5.26333 5.27004 5.39293 5.59164 5.72697 5.79890 5.84179 5.98932 5.99266 6.10451 6.18459 6.25446 6.33913 6.44782 6.49704 6.66130 6.73673 6.82298 6.89817 7.46929 7.60752 7.77387 8.00422 8.20832 8.88058 9.47054 10.99008 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.046840 B = 0.002848 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.639271 B = 9829.008134 C =10406.200900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.899 3.101 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.064 3.936 11 O -0.313 6.313 12 C 0.153 3.847 13 C -0.161 4.161 14 C -0.068 4.068 15 C -0.110 4.110 16 C -0.022 4.022 17 C -0.121 4.121 18 C -0.116 4.116 19 C -0.132 4.132 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.064 4.064 23 C -0.212 4.212 24 H 0.264 0.736 25 H 0.028 0.972 26 H 0.028 0.972 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.132 0.868 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.170 -21.824 0.011 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.012 4.012 10 C -0.010 4.010 11 O -0.226 6.226 12 C 0.106 3.894 13 C -0.180 4.180 14 C -0.086 4.086 15 C -0.110 4.110 16 C -0.022 4.022 17 C -0.139 4.139 18 C -0.134 4.134 19 C -0.150 4.150 20 C -0.134 4.134 21 C -0.139 4.139 22 C -0.082 4.082 23 C -0.230 4.230 24 H 0.073 0.927 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.150 0.850 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.142 0.858 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 9.794 -21.645 0.016 23.758 hybrid contribution 0.680 1.047 -0.008 1.248 sum 10.474 -20.598 0.007 23.108 Atomic orbital electron populations 1.69970 1.06112 1.27019 1.49629 1.24991 0.94911 0.99408 0.94877 0.86481 0.79734 0.82901 0.78238 1.20473 1.21025 1.19756 1.20963 0.93044 0.90189 1.52341 0.92356 1.19130 0.94171 0.88994 0.98915 1.23372 0.97149 0.80734 0.99769 1.86180 1.36662 1.13291 1.86472 1.19350 0.90133 0.87634 0.92313 1.20405 1.00580 0.89591 1.07424 1.20938 0.92609 0.97645 0.97377 1.18552 0.92887 0.91902 1.07679 1.18806 0.92862 0.92283 0.98264 1.21255 0.93141 0.98669 1.00810 1.21075 0.99775 0.92460 1.00061 1.21152 0.94760 0.97636 1.01466 1.21071 0.94055 0.98159 1.00118 1.21239 1.00032 0.91700 1.00903 1.20969 0.99471 0.91072 0.96722 1.21326 0.93159 0.99755 1.08805 0.92670 0.95360 0.95363 0.92990 0.93002 0.85038 0.85491 0.85790 0.86102 0.86320 0.86105 0.85771 0.85827 0.84866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.53 -14.61 9.11 -34.44 -0.31 -14.93 16 8 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 9 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 10 C 0.06 1.35 4.68 37.16 0.17 1.52 16 11 O -0.31 -6.38 10.13 -19.35 -0.20 -6.58 16 12 C 0.15 2.64 6.69 -39.14 -0.26 2.37 16 13 C -0.16 -2.39 9.97 -39.48 -0.39 -2.78 16 14 C -0.07 -0.86 9.42 -39.28 -0.37 -1.23 16 15 C -0.11 -1.43 5.88 -104.88 -0.62 -2.05 16 16 C -0.02 -0.26 5.88 -104.90 -0.62 -0.87 16 17 C -0.12 -1.26 9.43 -39.25 -0.37 -1.63 16 18 C -0.12 -1.05 10.03 -39.63 -0.40 -1.45 16 19 C -0.13 -1.14 10.04 -39.52 -0.40 -1.53 16 20 C -0.12 -1.03 10.03 -39.63 -0.40 -1.43 16 21 C -0.12 -1.23 9.43 -39.25 -0.37 -1.60 16 22 C -0.06 -0.86 9.42 -39.28 -0.37 -1.23 16 23 C -0.21 -3.28 9.02 -39.49 -0.36 -3.63 16 24 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.05 1.05 7.65 -51.93 -0.40 0.65 16 28 H 0.05 1.04 7.66 -51.93 -0.40 0.65 16 29 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 30 H 0.13 1.26 6.20 -52.49 -0.33 0.93 16 31 H 0.12 1.14 6.20 -52.49 -0.33 0.81 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 35 H 0.12 1.07 6.20 -52.49 -0.33 0.74 16 36 H 0.12 1.35 6.20 -52.49 -0.33 1.02 16 37 H 0.13 2.00 6.28 -52.49 -0.33 1.67 16 LS Contribution 315.06 15.07 4.75 4.75 Total: -1.00 -30.50 315.06 -9.54 -40.04 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -4.50 Total: -0.38 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -5.30 Total: -28.36 kcal Atomic # 7 Polarization: -26.37 SS G_CDS: 0.74 Total: -25.63 kcal Atomic # 8 Polarization: -6.38 SS G_CDS: -0.20 Total: -6.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.50 -9.54 -40.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035150048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.823 kcal (2) G-P(sol) polarization free energy of solvation -30.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds