Wall clock time and date at job start Mon Mar 30 2020 07:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86801 * 119.99954 * 2 1 4 4 H 1.48493 * 109.47221 * 270.00330 * 3 2 1 5 5 H 1.48504 * 109.46930 * 30.00457 * 3 2 1 6 6 H 1.48502 * 109.47120 * 150.00276 * 3 2 1 7 7 C 1.37876 * 120.00034 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00188 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47245 * 180.02562 * 9 7 2 11 11 O 1.42892 * 109.47258 * 180.02562 * 10 9 7 12 12 C 1.35875 * 117.00221 * 180.02562 * 11 10 9 13 13 C 1.38836 * 119.93522 * 179.97438 * 12 11 10 14 14 C 1.37911 * 120.06313 * 180.02562 * 13 12 11 15 15 C 1.39369 * 119.93490 * 359.97438 * 14 13 12 16 16 C 1.48365 * 120.06665 * 179.97438 * 15 14 13 17 17 C 1.39353 * 120.12218 * 179.97438 * 16 15 14 18 18 C 1.38018 * 119.86951 * 180.02562 * 17 16 15 19 19 C 1.38325 * 120.12682 * 359.97438 * 18 17 16 20 20 C 1.38323 * 120.24425 * 0.26110 * 19 18 17 21 21 C 1.38018 * 120.12331 * 359.48376 * 20 19 18 22 22 C 1.39383 * 119.87059 * 0.25036 * 15 14 13 23 23 C 1.37898 * 119.93291 * 359.53659 * 22 15 14 24 24 H 0.96994 * 120.00250 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.46908 * 60.00001 * 9 7 2 26 26 H 1.08998 * 109.46687 * 300.00299 * 9 7 2 27 27 H 1.08999 * 109.47656 * 59.99375 * 10 9 7 28 28 H 1.09003 * 109.47002 * 299.99958 * 10 9 7 29 29 H 1.07999 * 119.96893 * 359.97438 * 13 12 11 30 30 H 1.07996 * 120.02689 * 179.97438 * 14 13 12 31 31 H 1.07998 * 120.06363 * 0.02562 * 17 16 15 32 32 H 1.07997 * 119.93255 * 180.02562 * 18 17 16 33 33 H 1.08002 * 119.87397 * 179.97438 * 19 18 17 34 34 H 1.08003 * 119.93431 * 179.74857 * 20 19 18 35 35 H 1.07997 * 120.05795 * 180.26034 * 21 20 19 36 36 H 1.08001 * 120.02844 * 179.72693 * 22 15 14 37 37 H 1.08001 * 119.96909 * 180.18969 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 8 1.5309 -4.8996 -0.0011 12 6 2.2709 -6.0391 -0.0007 13 6 1.6392 -7.2755 -0.0007 14 6 2.3877 -8.4337 0.0003 15 6 3.7796 -8.3623 0.0008 16 6 4.5877 -9.6066 0.0025 17 6 5.9795 -9.5365 0.0024 18 6 6.7262 -10.6973 0.0034 19 6 6.0956 -11.9284 0.0050 20 6 4.7144 -12.0038 0.0002 21 6 3.9577 -10.8495 0.0045 22 6 4.4109 -7.1197 0.0055 23 6 3.6572 -5.9649 0.0001 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6247 -2.5570 0.8897 27 1 2.8721 -3.6043 0.8894 28 1 2.8719 -3.6043 -0.8905 29 1 0.5606 -7.3302 -0.0006 30 1 1.8958 -9.3951 0.0007 31 1 6.4729 -8.5758 0.0016 32 1 7.8048 -10.6442 0.0038 33 1 6.6839 -12.8341 0.0054 34 1 4.2273 -12.9677 -0.0027 35 1 2.8794 -10.9096 0.0049 36 1 5.4894 -7.0614 0.0104 37 1 4.1458 -5.0018 0.0007 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035150048.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:04:16 Heat of formation + Delta-G solvation = -18.104793 kcal Electronic energy + Delta-G solvation = -18306.576336 eV Core-core repulsion = 15398.677831 eV Total energy + Delta-G solvation = -2907.898505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.22566 -40.02518 -38.19426 -35.49723 -33.31120 -32.51401 -32.07462 -31.41083 -29.10598 -27.02866 -24.67485 -24.23258 -23.19623 -22.07240 -21.58451 -19.52567 -18.45875 -17.81382 -16.96779 -16.95190 -16.85223 -16.42385 -15.52063 -15.19107 -15.09564 -14.75532 -14.49660 -14.33505 -14.28871 -13.91274 -13.88593 -13.14539 -13.01288 -12.99818 -12.64271 -12.51297 -12.18765 -11.96307 -11.68630 -11.66066 -11.53018 -11.35010 -10.63426 -10.18998 -10.01778 -9.81461 -8.61977 -8.27602 -6.41377 -0.19619 0.36151 0.54263 0.99917 1.40541 1.42759 1.53862 2.25258 2.49698 2.66692 3.06906 3.15888 3.69735 3.73880 3.87865 4.11280 4.14858 4.23481 4.25237 4.29154 4.39394 4.42612 4.54626 4.66650 4.71393 4.81269 4.96366 5.02229 5.20514 5.26991 5.32609 5.35004 5.40973 5.45548 5.60708 5.65747 5.66756 5.82204 5.83212 6.06020 6.13868 6.51594 6.73381 7.28838 8.85574 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.046840 B = 0.002848 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 597.639271 B = 9829.008134 C =10406.200900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.001 3.999 3 Si 0.976 3.024 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.259 1.259 7 C -0.546 4.546 8 H 0.071 0.929 9 C 0.028 3.972 10 C 0.083 3.917 11 O -0.339 6.339 12 C 0.111 3.889 13 C -0.166 4.166 14 C -0.067 4.067 15 C -0.100 4.100 16 C -0.051 4.051 17 C -0.131 4.131 18 C -0.123 4.123 19 C -0.130 4.130 20 C -0.122 4.122 21 C -0.128 4.128 22 C -0.070 4.070 23 C -0.217 4.217 24 H 0.267 0.733 25 H -0.001 1.001 26 H -0.001 1.001 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.158 0.842 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.145 0.855 35 H 0.136 0.864 36 H 0.148 0.852 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.598 -23.694 0.011 26.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.799 3.201 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.183 1.183 7 C -0.584 4.584 8 H 0.089 0.911 9 C -0.009 4.009 10 C 0.009 3.991 11 O -0.253 6.253 12 C 0.066 3.934 13 C -0.184 4.184 14 C -0.085 4.085 15 C -0.100 4.100 16 C -0.051 4.051 17 C -0.149 4.149 18 C -0.141 4.141 19 C -0.148 4.148 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.088 4.088 23 C -0.236 4.236 24 H 0.076 0.924 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.155 0.845 30 H 0.175 0.825 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.154 0.846 36 H 0.165 0.835 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.238 -23.547 0.015 26.537 hybrid contribution -0.012 1.346 -0.009 1.346 sum 12.226 -22.201 0.006 25.345 Atomic orbital electron populations 1.70115 1.08052 1.28255 1.50596 1.26045 0.95830 1.03705 0.94147 0.85283 0.78576 0.77525 0.78675 1.19526 1.20646 1.18312 1.21396 0.93832 0.91006 1.52168 0.91105 1.18968 0.94559 0.91366 0.96048 1.22889 0.95450 0.80179 1.00589 1.86086 1.37468 1.13777 1.87951 1.19660 0.91025 0.87073 0.95685 1.20617 1.01220 0.89436 1.07138 1.21254 0.92712 0.98088 0.96414 1.18875 0.93254 0.92600 1.05254 1.18860 0.93386 0.92051 1.00798 1.21470 0.92949 0.99751 1.00692 1.21394 1.00983 0.92208 0.99534 1.21564 0.95044 0.98505 0.99643 1.21413 0.94403 0.98789 0.99397 1.21483 1.00950 0.91657 1.00465 1.21234 1.00643 0.90550 0.96346 1.21402 0.92595 1.00627 1.08968 0.92418 0.98284 0.98286 0.92095 0.92091 0.84478 0.82506 0.85107 0.83972 0.83804 0.83733 0.84602 0.83465 0.84969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.81 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.07 5.46 84.65 0.46 0.54 16 3 Si 0.98 43.52 29.54 68.60 2.03 45.55 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 7 C -0.55 -30.92 9.11 25.60 0.23 -30.68 16 8 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 9 C 0.03 1.53 5.34 29.85 0.16 1.69 16 10 C 0.08 3.67 4.68 71.98 0.34 4.00 16 11 O -0.34 -14.48 10.13 -92.14 -0.93 -15.42 16 12 C 0.11 3.94 6.69 22.56 0.15 4.09 16 13 C -0.17 -4.93 9.97 22.34 0.22 -4.71 16 14 C -0.07 -1.63 9.42 22.46 0.21 -1.42 16 15 C -0.10 -2.45 5.88 -20.03 -0.12 -2.57 16 16 C -0.05 -1.08 5.88 -20.04 -0.12 -1.20 16 17 C -0.13 -2.44 9.43 22.49 0.21 -2.23 16 18 C -0.12 -1.86 10.03 22.24 0.22 -1.64 16 19 C -0.13 -1.77 10.04 22.31 0.22 -1.54 16 20 C -0.12 -1.77 10.03 22.24 0.22 -1.54 16 21 C -0.13 -2.27 9.43 22.49 0.21 -2.05 16 22 C -0.07 -1.80 9.42 22.46 0.21 -1.59 16 23 C -0.22 -6.76 9.02 22.33 0.20 -6.56 16 24 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 25 H 0.00 -0.08 8.14 -2.39 -0.02 -0.09 16 26 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 27 H 0.06 2.52 7.65 -2.39 -0.02 2.51 16 28 H 0.06 2.52 7.66 -2.39 -0.02 2.50 16 29 H 0.14 3.78 8.06 -2.91 -0.02 3.76 16 30 H 0.16 2.75 6.20 -2.91 -0.02 2.74 16 31 H 0.13 2.12 6.20 -2.91 -0.02 2.11 16 32 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 33 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 34 H 0.14 1.34 8.06 -2.91 -0.02 1.32 16 35 H 0.14 1.95 6.20 -2.91 -0.02 1.94 16 36 H 0.15 2.98 6.20 -2.91 -0.02 2.96 16 37 H 0.13 4.02 6.28 -2.91 -0.02 4.00 16 Total: -1.00 -67.58 315.06 5.49 -62.09 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: 1.07 Total: 11.73 kcal Atomic # 6 Polarization: -50.46 SS G_CDS: 3.05 Total: -47.42 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: 0.28 Total: -56.53 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.93 Total: -15.42 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.55 kcal Total: -67.58 5.49 -62.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035150048.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.982 kcal (2) G-P(sol) polarization free energy of solvation -67.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds