Wall clock time and date at job start Mon Mar 30 2020 07:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00041 * 2 1 4 4 H 1.48502 * 109.46821 * 269.99695 * 3 2 1 5 5 H 1.48498 * 109.47187 * 29.99968 * 3 2 1 6 6 H 1.48500 * 109.47173 * 149.99760 * 3 2 1 7 7 C 1.37880 * 119.99827 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00393 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99801 * 180.02562 * 7 2 1 10 10 N 1.46902 * 109.47083 * 179.97438 * 9 7 2 11 11 C 1.46901 * 111.00047 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46903 * 35.00644 * 11 10 9 13 13 C 1.50702 * 109.47175 * 154.99804 * 11 10 9 14 14 C 1.38234 * 120.00271 * 220.00039 * 13 11 10 15 15 C 1.38230 * 119.99880 * 179.97438 * 14 13 11 16 16 C 1.38235 * 120.00326 * 359.97438 * 15 14 13 17 17 C 1.38234 * 119.99814 * 359.97438 * 16 15 14 18 18 C 1.38234 * 119.99485 * 39.98167 * 13 11 10 19 19 C 1.50698 * 109.47376 * 275.00350 * 11 10 9 20 20 C 1.38654 * 120.78918 * 319.71709 * 19 11 10 21 21 C 1.38204 * 119.16066 * 179.75491 * 20 19 11 22 22 N 1.31866 * 120.76457 * 0.53631 * 21 20 19 23 23 C 1.31867 * 121.72746 * 359.73556 * 22 21 20 24 24 C 1.38206 * 120.76546 * 359.97438 * 23 22 21 25 25 H 0.97001 * 120.00141 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.47432 * 59.99882 * 9 7 2 27 27 H 1.09006 * 109.47326 * 299.99762 * 9 7 2 28 28 H 1.00900 * 110.99726 * 56.05044 * 10 9 7 29 29 H 1.08001 * 119.99769 * 359.97438 * 14 13 11 30 30 H 1.08000 * 120.00376 * 180.02562 * 15 14 13 31 31 H 1.08000 * 120.00616 * 179.72578 * 16 15 14 32 32 H 1.08001 * 120.00299 * 179.97438 * 17 16 15 33 33 H 1.07997 * 120.00489 * 0.02562 * 18 13 11 34 34 H 1.07997 * 120.41754 * 0.02562 * 20 19 11 35 35 H 1.08002 * 119.61630 * 180.25167 * 21 20 19 36 36 H 1.07997 * 119.62236 * 179.97438 * 23 22 21 37 37 H 1.08003 * 120.41857 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1941 0.0011 10 7 4.0011 -2.5791 0.0022 11 6 5.4696 -2.6183 0.0022 12 1 5.8553 -1.7860 0.5911 13 6 5.9375 -3.9184 0.6038 14 6 7.0324 -3.9353 1.4474 15 6 7.4611 -5.1278 1.9995 16 6 6.7946 -6.3034 1.7086 17 6 5.6990 -6.2864 0.8658 18 6 5.2713 -5.0941 0.3122 19 6 5.9751 -2.5090 -1.4132 20 6 5.3370 -3.1755 -2.4482 21 6 5.8262 -3.0475 -3.7344 22 7 6.8922 -2.3112 -3.9805 23 6 7.5274 -1.6680 -3.0204 24 6 7.0927 -1.7441 -1.7107 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6800 0.8911 27 1 3.8752 -0.6805 -0.8889 28 1 3.6260 -3.0958 -0.7790 29 1 7.5529 -3.0168 1.6750 30 1 8.3163 -5.1411 2.6590 31 1 7.1322 -7.2358 2.1364 32 1 5.1785 -7.2049 0.6381 33 1 4.4159 -5.0809 -0.3469 34 1 4.4661 -3.7833 -2.2523 35 1 5.3325 -3.5601 -4.5467 36 1 8.3974 -1.0748 -3.2603 37 1 7.6169 -1.2147 -0.9289 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035174635.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:47 Heat of formation + Delta-G solvation = 44.704751 kcal Electronic energy + Delta-G solvation = -19551.786391 eV Core-core repulsion = 16678.904264 eV Total energy + Delta-G solvation = -2872.882127 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48579 -39.97115 -37.61891 -35.02714 -33.23941 -32.19931 -31.98364 -31.66066 -29.21652 -26.52760 -24.63552 -23.69669 -23.44336 -22.83126 -21.50202 -19.13847 -18.08365 -17.83208 -17.25819 -16.57458 -16.49657 -15.99289 -15.88669 -15.52560 -15.03727 -14.93141 -14.58668 -14.36719 -14.27728 -14.15226 -13.91810 -13.47652 -13.16949 -12.72067 -12.58162 -12.42745 -12.05131 -11.88565 -11.78059 -11.51179 -10.87230 -10.57938 -10.53348 -10.11140 -9.74545 -9.56978 -9.31603 -8.33248 -6.37644 0.18007 0.18899 0.56082 0.58890 1.31272 1.32571 1.43282 2.30144 2.82689 2.92514 3.00978 3.32279 3.55856 3.66140 3.81853 4.01796 4.09470 4.14252 4.22201 4.26137 4.35400 4.39386 4.65126 4.71175 4.73590 4.79336 4.86020 4.97706 5.01869 5.13841 5.21308 5.29139 5.47225 5.62186 5.68090 5.70610 5.74464 5.93777 6.18385 6.43976 6.54769 6.70407 6.98425 7.26955 8.83312 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.006520 C = 0.005186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.401388 B = 4293.340073 C = 5398.216110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.248 1.248 7 C -0.526 4.526 8 H 0.039 0.961 9 C 0.180 3.820 10 N -0.669 5.669 11 C 0.161 3.839 12 H 0.092 0.908 13 C -0.074 4.074 14 C -0.125 4.125 15 C -0.124 4.124 16 C -0.128 4.128 17 C -0.130 4.130 18 C -0.112 4.112 19 C -0.066 4.066 20 C -0.175 4.175 21 C 0.093 3.907 22 N -0.511 5.511 23 C 0.093 3.907 24 C -0.170 4.170 25 H 0.268 0.732 26 H 0.027 0.973 27 H -0.018 1.018 28 H 0.338 0.662 29 H 0.133 0.867 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.136 0.864 33 H 0.112 0.888 34 H 0.135 0.865 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.993 -8.432 -0.554 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.171 1.171 7 C -0.565 4.565 8 H 0.058 0.942 9 C 0.051 3.949 10 N -0.299 5.299 11 C 0.051 3.949 12 H 0.111 0.889 13 C -0.075 4.075 14 C -0.143 4.143 15 C -0.142 4.142 16 C -0.146 4.146 17 C -0.148 4.148 18 C -0.130 4.130 19 C -0.076 4.076 20 C -0.196 4.196 21 C -0.063 4.063 22 N -0.220 5.220 23 C -0.064 4.064 24 C -0.190 4.190 25 H 0.077 0.923 26 H 0.045 0.955 27 H -0.001 1.001 28 H 0.159 0.841 29 H 0.151 0.849 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.130 0.870 34 H 0.152 0.848 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 19.058 -8.321 -0.714 20.808 hybrid contribution -0.729 0.980 -0.099 1.225 sum 18.329 -7.341 -0.813 19.762 Atomic orbital electron populations 1.70038 1.08082 1.28209 1.52147 1.25809 0.95580 1.03063 0.94151 0.85747 0.79618 0.78795 0.79002 1.19577 1.20465 1.17144 1.21272 0.91174 0.93482 1.50543 0.94223 1.19742 0.93823 0.86708 0.94581 1.60661 1.04697 1.14868 1.49719 1.19528 0.88475 0.96313 0.90578 0.88950 1.19658 0.96167 0.93586 0.98043 1.21218 0.96368 0.99513 0.97205 1.21398 1.00655 0.92113 0.99998 1.21468 0.95723 0.99236 0.98144 1.21396 0.97621 0.97944 0.97859 1.21035 0.99112 0.92633 1.00270 1.21215 0.95076 0.94598 0.96720 1.22080 1.01737 1.01492 0.94249 1.23032 0.92296 0.94980 0.95991 1.67699 1.08701 1.08275 1.37345 1.23216 0.98957 0.95783 0.88426 1.22314 0.97118 1.00301 0.99307 0.92321 0.95452 1.00070 0.84131 0.84878 0.83593 0.83732 0.84587 0.86979 0.84759 0.80807 0.79966 0.82693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.96 13.96 21.45 0.30 -58.66 16 2 C 0.01 0.70 5.47 84.66 0.46 1.16 16 3 Si 0.94 44.07 27.47 68.60 1.88 45.95 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 7 C -0.53 -30.34 9.87 25.60 0.25 -30.09 16 8 H 0.04 2.53 8.06 -2.91 -0.02 2.51 16 9 C 0.18 8.48 4.30 85.56 0.37 8.85 16 10 N -0.67 -26.62 5.68 -503.36 -2.86 -29.48 16 11 C 0.16 5.12 2.46 43.42 0.11 5.23 16 12 H 0.09 2.88 7.56 -2.39 -0.02 2.86 16 13 C -0.07 -2.12 4.94 -19.87 -0.10 -2.22 16 14 C -0.12 -3.01 9.67 22.27 0.22 -2.80 16 15 C -0.12 -2.54 10.05 22.27 0.22 -2.31 16 16 C -0.13 -2.60 10.05 22.27 0.22 -2.38 16 17 C -0.13 -3.06 10.05 22.27 0.22 -2.83 16 18 C -0.11 -3.16 9.16 22.27 0.20 -2.96 16 19 C -0.07 -1.95 4.72 -19.67 -0.09 -2.05 16 20 C -0.18 -5.11 9.04 22.36 0.20 -4.91 16 21 C 0.09 2.54 11.18 84.68 0.95 3.49 16 22 N -0.51 -14.45 10.36 -195.85 -2.03 -16.48 16 23 C 0.09 2.27 11.18 84.68 0.95 3.22 16 24 C -0.17 -4.30 9.78 22.36 0.22 -4.09 16 25 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 26 H 0.03 1.30 7.11 -2.39 -0.02 1.28 16 27 H -0.02 -0.86 7.43 -2.38 -0.02 -0.88 16 28 H 0.34 13.22 5.79 -89.69 -0.52 12.70 16 29 H 0.13 2.70 8.04 -2.91 -0.02 2.67 16 30 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 31 H 0.14 2.07 8.06 -2.91 -0.02 2.05 16 32 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 33 H 0.11 3.25 6.89 -2.91 -0.02 3.23 16 34 H 0.13 3.79 6.28 -2.91 -0.02 3.77 16 35 H 0.17 3.79 8.06 -2.91 -0.02 3.77 16 36 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 37 H 0.16 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -69.56 313.95 2.20 -67.37 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.50 Total: 25.98 kcal Atomic # 6 Polarization: -39.09 SS G_CDS: 4.40 Total: -34.68 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -4.59 Total: -104.61 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -69.56 2.20 -67.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035174635.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.071 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds