Wall clock time and date at job start Mon Mar 30 2020 07:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48492 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47418 * 300.00780 * 3 2 1 6 6 H 1.48508 * 109.46909 * 60.00395 * 3 2 1 7 7 C 1.37880 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00031 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46809 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99621 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47495 * 324.99872 * 11 10 9 13 13 C 1.50707 * 109.46723 * 204.99967 * 11 10 9 14 14 C 1.38236 * 120.00102 * 319.72670 * 13 11 10 15 15 C 1.38234 * 119.99436 * 179.81053 * 14 13 11 16 16 C 1.38232 * 120.00359 * 0.39996 * 15 14 13 17 17 C 1.38237 * 119.99851 * 359.85329 * 16 15 14 18 18 C 1.38226 * 120.00203 * 359.95837 * 17 16 15 19 19 C 1.50699 * 109.47019 * 85.00224 * 11 10 9 20 20 C 1.38647 * 120.78723 * 219.99411 * 19 11 10 21 21 C 1.38209 * 119.16168 * 179.74448 * 20 19 11 22 22 N 1.31875 * 120.76041 * 0.25720 * 21 20 19 23 23 C 1.31861 * 121.73030 * 0.02562 * 22 21 20 24 24 C 1.38205 * 120.76443 * 0.02562 * 23 22 21 25 25 H 0.96991 * 120.00230 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47252 * 60.00435 * 9 7 2 27 27 H 1.08993 * 109.46708 * 299.99906 * 9 7 2 28 28 H 1.00895 * 111.00396 * 303.95422 * 10 9 7 29 29 H 1.08003 * 119.99875 * 0.02562 * 14 13 11 30 30 H 1.07999 * 119.99533 * 180.22972 * 15 14 13 31 31 H 1.07997 * 119.99888 * 179.83290 * 16 15 14 32 32 H 1.08004 * 119.99623 * 179.97438 * 17 16 15 33 33 H 1.07999 * 120.00344 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.42293 * 0.02952 * 20 19 11 35 35 H 1.07995 * 119.61831 * 180.23405 * 21 20 19 36 36 H 1.07997 * 119.61902 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.42656 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 1 0.5923 -4.8250 0.5898 13 6 2.3981 -5.9623 0.6006 14 6 3.7479 -5.9769 0.3028 15 6 4.5674 -6.9426 0.8568 16 6 4.0357 -7.8985 1.7019 17 6 2.6849 -7.8870 1.9955 18 6 1.8661 -6.9191 1.4447 19 6 1.1566 -5.2900 -1.4151 20 6 -0.0647 -5.8756 -1.7114 21 6 -0.3518 -6.2084 -3.0217 22 7 0.5219 -5.9797 -3.9826 23 6 1.6949 -5.4298 -3.7369 24 6 2.0521 -5.0714 -2.4508 25 1 -0.4850 0.8399 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8405 -3.5487 -0.7818 29 1 4.1628 -5.2318 -0.3599 30 1 5.6227 -6.9517 0.6271 31 1 4.6755 -8.6545 2.1325 32 1 2.2694 -8.6342 2.6555 33 1 0.8107 -6.9104 1.6737 34 1 -0.7846 -6.0650 -0.9288 35 1 -1.3025 -6.6614 -3.2613 36 1 2.3845 -5.2575 -4.5500 37 1 3.0142 -4.6209 -2.2558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035174638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:50 Heat of formation + Delta-G solvation = 59.804817 kcal Electronic energy + Delta-G solvation = -19483.760891 eV Core-core repulsion = 16611.533552 eV Total energy + Delta-G solvation = -2872.227339 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.28314 -38.90291 -36.11766 -33.13670 -31.49457 -31.02012 -30.78095 -30.59926 -27.04974 -24.98215 -23.41958 -22.51862 -22.33572 -21.48295 -20.23858 -17.14199 -16.88374 -16.16118 -16.04229 -15.35994 -15.00520 -14.80055 -14.54942 -14.04770 -13.76764 -13.49387 -13.21015 -13.17186 -12.90219 -12.54178 -12.22024 -11.85906 -11.55474 -11.23412 -11.06156 -10.85691 -10.71842 -10.69347 -10.08322 -9.38247 -9.37324 -9.20354 -8.96005 -8.73571 -8.56591 -8.47636 -7.53683 -6.08868 -4.11311 1.33284 1.37288 1.59384 1.64107 3.27838 3.35333 3.39825 3.94261 4.03161 4.37713 4.61677 4.75293 4.93190 5.04087 5.08464 5.13197 5.20945 5.27718 5.31386 5.35055 5.47177 5.63819 5.71246 5.81228 5.83391 5.96704 6.13470 6.19482 6.22218 6.50217 6.61941 6.66696 6.85977 6.88362 7.11463 7.17886 7.31377 7.68962 8.02529 8.13660 8.19854 8.45517 8.96942 9.53872 11.02226 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.006045 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.641263 B = 4630.473940 C = 5832.539710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.194 3.806 10 N -0.672 5.672 11 C 0.157 3.843 12 H 0.093 0.907 13 C -0.052 4.052 14 C -0.093 4.093 15 C -0.123 4.123 16 C -0.130 4.130 17 C -0.123 4.123 18 C -0.116 4.116 19 C -0.047 4.047 20 C -0.165 4.165 21 C 0.095 3.905 22 N -0.494 5.494 23 C 0.098 3.902 24 C -0.163 4.163 25 H 0.261 0.739 26 H -0.011 1.011 27 H 0.029 0.971 28 H 0.331 0.669 29 H 0.121 0.879 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.132 0.868 35 H 0.152 0.848 36 H 0.153 0.847 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.977 -15.418 -0.966 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.554 4.554 8 H 0.081 0.919 9 C 0.068 3.932 10 N -0.302 5.302 11 C 0.045 3.955 12 H 0.111 0.889 13 C -0.053 4.053 14 C -0.111 4.111 15 C -0.141 4.141 16 C -0.148 4.148 17 C -0.142 4.142 18 C -0.134 4.134 19 C -0.057 4.057 20 C -0.186 4.186 21 C -0.061 4.061 22 N -0.203 5.203 23 C -0.058 4.058 24 C -0.183 4.183 25 H 0.071 0.929 26 H 0.007 0.993 27 H 0.048 0.952 28 H 0.150 0.850 29 H 0.139 0.861 30 H 0.136 0.864 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.137 0.863 34 H 0.150 0.850 35 H 0.169 0.831 36 H 0.170 0.830 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.702 -15.465 -1.127 15.942 hybrid contribution 0.193 1.259 0.048 1.274 sum 3.895 -14.207 -1.079 14.770 Atomic orbital electron populations 1.69964 1.06095 1.26791 1.50669 1.24976 0.94869 0.99394 0.95203 0.86428 0.80060 0.83300 0.77560 1.19623 1.21061 1.20937 1.21161 0.93520 0.90064 1.50650 0.91879 1.19620 0.90528 0.87071 0.95967 1.60954 1.20464 1.00021 1.48729 1.19570 0.96325 0.90009 0.89565 0.88862 1.19755 0.94276 0.94816 0.96438 1.20949 0.93121 0.97540 0.99495 1.21106 0.99534 0.95487 0.98018 1.21056 0.95344 0.99209 0.99185 1.21023 0.93936 0.98877 1.00317 1.20994 0.99753 0.95053 0.97609 1.21200 0.93522 0.93611 0.97378 1.22032 0.97543 1.00648 0.98350 1.22665 0.98174 0.96507 0.88801 1.67622 1.03063 1.13034 1.36589 1.22644 0.93335 0.94261 0.95575 1.21941 1.00928 1.01610 0.93803 0.92893 0.99292 0.95244 0.84975 0.86083 0.86416 0.86642 0.86474 0.86336 0.85038 0.83100 0.82990 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.52 -14.29 9.32 -34.44 -0.32 -14.61 16 8 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 9 C 0.19 4.93 5.23 -4.97 -0.03 4.91 16 10 N -0.67 -13.64 5.69 -110.45 -0.63 -14.27 16 11 C 0.16 2.67 2.46 -70.01 -0.17 2.49 16 12 H 0.09 1.64 7.56 -51.93 -0.39 1.25 16 13 C -0.05 -0.80 4.94 -104.62 -0.52 -1.31 16 14 C -0.09 -1.34 9.15 -39.58 -0.36 -1.70 16 15 C -0.12 -1.56 10.05 -39.59 -0.40 -1.96 16 16 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 17 C -0.12 -1.50 10.05 -39.59 -0.40 -1.90 16 18 C -0.12 -1.58 9.67 -39.58 -0.38 -1.96 16 19 C -0.05 -0.76 4.72 -104.32 -0.49 -1.25 16 20 C -0.17 -2.43 9.78 -39.44 -0.39 -2.82 16 21 C 0.10 1.36 11.18 -17.54 -0.20 1.17 16 22 N -0.49 -7.74 10.36 -13.25 -0.14 -7.88 16 23 C 0.10 1.45 11.18 -17.55 -0.20 1.25 16 24 C -0.16 -2.49 9.02 -39.44 -0.36 -2.85 16 25 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 26 H -0.01 -0.29 8.00 -51.93 -0.42 -0.71 16 27 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 28 H 0.33 6.36 5.80 -39.29 -0.23 6.14 16 29 H 0.12 1.70 6.88 -52.48 -0.36 1.34 16 30 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 32 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 33 H 0.12 1.43 8.04 -52.49 -0.42 1.01 16 34 H 0.13 1.65 8.06 -52.49 -0.42 1.22 16 35 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 37 H 0.13 1.87 6.25 -52.49 -0.33 1.54 16 LS Contribution 317.49 15.07 4.78 4.78 Total: -1.00 -31.39 317.49 -9.61 -41.00 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -4.65 Total: 6.62 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: -4.70 Total: -20.96 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.03 Total: -47.92 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.39 -9.61 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035174638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.802 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds