Wall clock time and date at job start Mon Mar 30 2020 07:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00034 * 2 1 4 4 H 1.48492 * 109.47292 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47418 * 300.00780 * 3 2 1 6 6 H 1.48508 * 109.46909 * 60.00395 * 3 2 1 7 7 C 1.37880 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00031 * 359.97438 * 7 2 1 10 10 N 1.46904 * 109.46809 * 180.02562 * 9 7 2 11 11 C 1.46902 * 110.99621 * 179.97438 * 10 9 7 12 12 H 1.08998 * 109.47495 * 324.99872 * 11 10 9 13 13 C 1.50707 * 109.46723 * 204.99967 * 11 10 9 14 14 C 1.38236 * 120.00102 * 319.72670 * 13 11 10 15 15 C 1.38234 * 119.99436 * 179.81053 * 14 13 11 16 16 C 1.38232 * 120.00359 * 0.39996 * 15 14 13 17 17 C 1.38237 * 119.99851 * 359.85329 * 16 15 14 18 18 C 1.38226 * 120.00203 * 359.95837 * 17 16 15 19 19 C 1.50699 * 109.47019 * 85.00224 * 11 10 9 20 20 C 1.38647 * 120.78723 * 219.99411 * 19 11 10 21 21 C 1.38209 * 119.16168 * 179.74448 * 20 19 11 22 22 N 1.31875 * 120.76041 * 0.25720 * 21 20 19 23 23 C 1.31861 * 121.73030 * 0.02562 * 22 21 20 24 24 C 1.38205 * 120.76443 * 0.02562 * 23 22 21 25 25 H 0.96991 * 120.00230 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47252 * 60.00435 * 9 7 2 27 27 H 1.08993 * 109.46708 * 299.99906 * 9 7 2 28 28 H 1.00895 * 111.00396 * 303.95422 * 10 9 7 29 29 H 1.08003 * 119.99875 * 0.02562 * 14 13 11 30 30 H 1.07999 * 119.99533 * 180.22972 * 15 14 13 31 31 H 1.07997 * 119.99888 * 179.83290 * 16 15 14 32 32 H 1.08004 * 119.99623 * 179.97438 * 17 16 15 33 33 H 1.07999 * 120.00344 * 179.97438 * 18 17 16 34 34 H 1.08002 * 120.42293 * 0.02952 * 20 19 11 35 35 H 1.07995 * 119.61831 * 180.23405 * 21 20 19 36 36 H 1.07997 * 119.61902 * 180.02562 * 23 22 21 37 37 H 1.08001 * 120.42656 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2123 6 1 1.8904 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2057 -3.6157 -0.0005 11 6 1.5053 -4.9071 0.0001 12 1 0.5923 -4.8250 0.5898 13 6 2.3981 -5.9623 0.6006 14 6 3.7479 -5.9769 0.3028 15 6 4.5674 -6.9426 0.8568 16 6 4.0357 -7.8985 1.7019 17 6 2.6849 -7.8870 1.9955 18 6 1.8661 -6.9191 1.4447 19 6 1.1566 -5.2900 -1.4151 20 6 -0.0647 -5.8756 -1.7114 21 6 -0.3518 -6.2084 -3.0217 22 7 0.5219 -5.9797 -3.9826 23 6 1.6949 -5.4298 -3.7369 24 6 2.0521 -5.0714 -2.4508 25 1 -0.4850 0.8399 0.0004 26 1 0.6241 -2.5568 -0.8903 27 1 0.6248 -2.5571 0.8897 28 1 2.8405 -3.5487 -0.7818 29 1 4.1628 -5.2318 -0.3599 30 1 5.6227 -6.9517 0.6271 31 1 4.6755 -8.6545 2.1325 32 1 2.2694 -8.6342 2.6555 33 1 0.8107 -6.9104 1.6737 34 1 -0.7846 -6.0650 -0.9288 35 1 -1.3025 -6.6614 -3.2613 36 1 2.3845 -5.2575 -4.5500 37 1 3.0142 -4.6209 -2.2558 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035174638.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:50 Heat of formation + Delta-G solvation = 41.365308 kcal Electronic energy + Delta-G solvation = -19484.560488 eV Core-core repulsion = 16611.533552 eV Total energy + Delta-G solvation = -2873.026937 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.47076 -39.96409 -37.56193 -35.07323 -33.05504 -32.18183 -31.93585 -31.64876 -28.80263 -26.50245 -24.74367 -23.81339 -23.48638 -22.98212 -21.46858 -18.85519 -18.02673 -17.70508 -17.26363 -16.63965 -16.51184 -16.08916 -15.84662 -15.45217 -14.98748 -14.71208 -14.55979 -14.44445 -14.15667 -13.97078 -13.81590 -13.33219 -13.13311 -12.74665 -12.63388 -12.39798 -12.12280 -12.05319 -11.80354 -11.33890 -10.74558 -10.54542 -10.52054 -10.10811 -9.74216 -9.55860 -9.26329 -8.24983 -6.36010 0.18373 0.20126 0.56504 0.59253 1.39759 1.40371 1.53963 2.37828 2.83507 2.93406 3.09109 3.39223 3.55909 3.68291 3.82778 4.04017 4.09994 4.15516 4.22244 4.27262 4.36010 4.40316 4.65130 4.73322 4.79335 4.85694 4.97657 5.04438 5.14157 5.20821 5.23069 5.31591 5.56370 5.64048 5.68100 5.74336 5.78083 5.98218 6.18553 6.35288 6.61293 6.83621 6.98005 7.34905 8.86748 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014176 B = 0.006045 C = 0.004800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.641263 B = 4630.473940 C = 5832.539710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.003 3.997 3 Si 0.971 3.029 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.065 0.935 9 C 0.215 3.785 10 N -0.669 5.669 11 C 0.163 3.837 12 H 0.078 0.922 13 C -0.072 4.072 14 C -0.110 4.110 15 C -0.127 4.127 16 C -0.128 4.128 17 C -0.124 4.124 18 C -0.129 4.129 19 C -0.063 4.063 20 C -0.175 4.175 21 C 0.093 3.907 22 N -0.511 5.511 23 C 0.094 3.906 24 C -0.174 4.174 25 H 0.265 0.735 26 H -0.040 1.040 27 H 0.000 1.000 28 H 0.337 0.663 29 H 0.116 0.884 30 H 0.140 0.860 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.127 0.873 34 H 0.148 0.852 35 H 0.182 0.818 36 H 0.179 0.821 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -16.396 -0.816 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.195 4.195 3 Si 0.795 3.205 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.572 4.572 8 H 0.083 0.917 9 C 0.088 3.912 10 N -0.299 5.299 11 C 0.052 3.948 12 H 0.096 0.904 13 C -0.073 4.073 14 C -0.129 4.129 15 C -0.145 4.145 16 C -0.145 4.145 17 C -0.141 4.141 18 C -0.147 4.147 19 C -0.073 4.073 20 C -0.195 4.195 21 C -0.064 4.064 22 N -0.220 5.220 23 C -0.062 4.062 24 C -0.194 4.194 25 H 0.074 0.926 26 H -0.022 1.022 27 H 0.018 0.982 28 H 0.157 0.843 29 H 0.134 0.866 30 H 0.158 0.842 31 H 0.165 0.835 32 H 0.163 0.837 33 H 0.145 0.855 34 H 0.166 0.834 35 H 0.199 0.801 36 H 0.196 0.804 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.031 -16.470 -0.979 17.249 hybrid contribution -0.224 1.452 0.024 1.469 sum 4.807 -15.018 -0.956 15.798 Atomic orbital electron populations 1.70090 1.07803 1.27928 1.51488 1.25919 0.95736 1.03309 0.94557 0.85307 0.79039 0.78406 0.77702 1.18522 1.20427 1.20421 1.21531 0.93811 0.91271 1.50585 0.91660 1.19169 0.90446 0.88542 0.93091 1.60801 1.19681 1.00251 1.49181 1.19459 0.95964 0.88940 0.90441 0.90387 1.19657 0.94499 0.95225 0.97931 1.21038 0.93109 0.98466 1.00259 1.21411 1.00516 0.94934 0.97666 1.21474 0.95646 0.99230 0.98188 1.21382 0.94093 0.98675 0.99990 1.21200 1.00657 0.95311 0.97547 1.21215 0.94558 0.94660 0.96905 1.22285 0.97373 1.00525 0.99317 1.23170 0.99048 0.95819 0.88315 1.67695 1.03592 1.13603 1.37137 1.23078 0.93592 0.93539 0.96028 1.22083 1.01223 1.02030 0.94092 0.92644 1.02210 0.98199 0.84306 0.86587 0.84174 0.83548 0.83698 0.85548 0.83432 0.80084 0.80394 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.36 13.29 21.45 0.28 -56.07 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.97 44.20 29.54 68.60 2.03 46.23 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 5 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.53 -30.20 9.32 25.60 0.24 -29.97 16 8 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.22 11.41 5.23 85.56 0.45 11.85 16 10 N -0.67 -28.18 5.69 -503.36 -2.86 -31.04 16 11 C 0.16 5.75 2.46 43.42 0.11 5.86 16 12 H 0.08 2.92 7.56 -2.39 -0.02 2.91 16 13 C -0.07 -2.23 4.94 -19.86 -0.10 -2.33 16 14 C -0.11 -3.15 9.15 22.27 0.20 -2.95 16 15 C -0.13 -2.98 10.05 22.27 0.22 -2.75 16 16 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 17 C -0.12 -2.71 10.05 22.27 0.22 -2.48 16 18 C -0.13 -3.43 9.67 22.27 0.22 -3.21 16 19 C -0.06 -2.09 4.72 -19.67 -0.09 -2.18 16 20 C -0.17 -5.16 9.78 22.36 0.22 -4.94 16 21 C 0.09 2.58 11.18 84.68 0.95 3.53 16 22 N -0.51 -15.61 10.36 -195.85 -2.03 -17.64 16 23 C 0.09 2.71 11.18 84.68 0.95 3.66 16 24 C -0.17 -5.39 9.02 22.36 0.20 -5.19 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H -0.04 -2.30 8.00 -2.39 -0.02 -2.32 16 27 H 0.00 -0.01 8.05 -2.39 -0.02 -0.02 16 28 H 0.34 13.39 5.80 -89.70 -0.52 12.87 16 29 H 0.12 3.30 6.88 -2.91 -0.02 3.28 16 30 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.15 2.12 8.06 -2.91 -0.02 2.09 16 32 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 33 H 0.13 3.02 8.04 -2.91 -0.02 3.00 16 34 H 0.15 3.71 8.06 -2.91 -0.02 3.69 16 35 H 0.18 3.74 8.06 -2.91 -0.02 3.71 16 36 H 0.18 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.14 3.98 6.25 -2.91 -0.02 3.96 16 Total: -1.00 -68.10 317.49 2.44 -65.66 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.55 Total: 25.75 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 4.47 Total: -32.89 kcal Atomic # 7 Polarization: -100.15 SS G_CDS: -4.61 Total: -104.75 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -68.10 2.44 -65.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035174638.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.029 kcal (2) G-P(sol) polarization free energy of solvation -68.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds