Wall clock time and date at job start Mon Mar 30 2020 07:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 120.00318 * 2 1 4 4 H 1.48505 * 109.47226 * 240.00681 * 3 2 1 5 5 H 1.48502 * 109.47115 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47143 * 120.00208 * 3 2 1 7 7 C 1.37881 * 119.99659 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99814 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00231 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47179 * 179.97438 * 9 7 2 11 11 C 1.39721 * 120.00063 * 90.00163 * 10 9 7 12 12 C 1.38921 * 120.07558 * 91.70215 * 11 10 9 13 13 C 1.38108 * 119.92330 * 179.72140 * 12 11 10 14 14 C 1.38289 * 120.07200 * 0.53837 * 13 12 11 15 15 C 1.38292 * 120.15303 * 359.76177 * 14 13 12 16 16 C 1.38095 * 120.07816 * 359.95762 * 15 14 13 17 17 C 1.39707 * 120.00189 * 270.00087 * 10 9 7 18 18 C 1.39003 * 120.03784 * 5.25164 * 17 10 9 19 19 C 1.38133 * 120.07266 * 180.02562 * 18 17 10 20 20 C 1.38182 * 120.14456 * 359.96135 * 19 18 17 21 21 C 1.38946 * 120.08043 * 0.04296 * 20 19 18 22 22 N 1.39678 * 120.03476 * 180.02562 * 21 20 19 23 23 C 1.38776 * 120.03596 * 184.98228 * 17 10 9 24 24 H 0.97003 * 119.99437 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47175 * 300.00067 * 9 7 2 26 26 H 1.09004 * 109.47079 * 59.99705 * 9 7 2 27 27 H 1.08003 * 120.04292 * 0.02562 * 12 11 10 28 28 H 1.07993 * 119.96366 * 180.30005 * 13 12 11 29 29 H 1.07997 * 119.92351 * 179.74015 * 14 13 12 30 30 H 1.08001 * 119.96332 * 179.97438 * 15 14 13 31 31 H 1.07998 * 120.04246 * 179.97438 * 16 15 14 32 32 H 1.07998 * 119.96433 * 0.02562 * 18 17 10 33 33 H 1.07996 * 119.92135 * 179.97438 * 19 18 17 34 34 H 1.08000 * 119.95520 * 180.02562 * 20 19 18 35 35 H 0.96994 * 120.00129 * 359.97438 * 22 21 20 36 36 H 0.97002 * 119.99523 * 179.97438 * 22 21 20 37 37 H 1.07995 * 120.07446 * 359.97438 * 23 17 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 2.6578 -4.1443 1.2076 12 6 1.9912 -5.2135 1.7927 13 6 2.4469 -5.7402 2.9853 14 6 3.5589 -5.1972 3.6026 15 6 4.2212 -4.1289 3.0261 16 6 3.7744 -3.6010 1.8308 17 6 2.6559 -4.1431 -1.2122 18 6 2.2905 -3.5467 -2.4134 19 6 2.7376 -4.0709 -3.6107 20 6 3.5498 -5.1888 -3.6186 21 6 3.9188 -5.7900 -2.4215 22 7 4.7402 -6.9196 -2.4306 23 6 3.4759 -5.2628 -1.2165 24 1 -0.4849 0.8401 0.0004 25 1 0.6247 -2.5571 0.8897 26 1 0.6239 -2.5567 -0.8903 27 1 1.1204 -5.6356 1.3131 28 1 1.9321 -6.5745 3.4382 29 1 3.9107 -5.6083 4.5373 30 1 5.0891 -3.7070 3.5110 31 1 4.2918 -2.7664 1.3813 32 1 1.6563 -2.6725 -2.4107 33 1 2.4518 -3.6058 -4.5425 34 1 3.8979 -5.5958 -4.5565 35 1 5.0531 -7.2850 -3.2729 36 1 4.9978 -7.3386 -1.5946 37 1 3.7651 -5.7252 -0.2844 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036720290.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:46 Heat of formation + Delta-G solvation = 60.120889 kcal Electronic energy + Delta-G solvation = -19763.635718 eV Core-core repulsion = 16891.422085 eV Total energy + Delta-G solvation = -2872.213634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56038 -38.22938 -35.83878 -33.48762 -32.69033 -30.53058 -29.84704 -29.42461 -27.50665 -26.27429 -23.01584 -22.42999 -22.12099 -21.09980 -19.81309 -17.36830 -16.62272 -16.38226 -16.03384 -15.20738 -15.12238 -14.68917 -14.53496 -13.95774 -13.79422 -13.04614 -12.98196 -12.82489 -12.71964 -12.31920 -12.03883 -11.51031 -11.26168 -11.16129 -10.88890 -10.77881 -10.71614 -10.39598 -10.26556 -10.00968 -9.61333 -8.83035 -8.55801 -8.48906 -8.24270 -7.21010 -6.51809 -6.03515 -4.14460 1.70984 1.78709 2.24870 2.45331 3.29801 3.34014 3.37103 3.97593 4.16004 4.30564 4.42416 4.66706 5.24385 5.26560 5.33018 5.44613 5.57063 5.78172 5.83616 5.96057 5.99950 6.17778 6.30765 6.37487 6.40577 6.43066 6.72078 6.84488 6.88338 7.02825 7.06852 7.16326 7.29725 7.31650 7.41935 7.43008 7.83184 7.95443 8.12007 8.16921 8.32578 8.59693 8.92679 9.51487 10.98240 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.007950 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.950868 B = 3520.955797 C = 5068.790028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.063 3.937 3 Si 0.895 3.105 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.256 3.744 10 N -0.580 5.580 11 C 0.179 3.821 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.133 4.133 15 C -0.119 4.119 16 C -0.108 4.108 17 C 0.275 3.725 18 C -0.227 4.227 19 C -0.039 4.039 20 C -0.266 4.266 21 C 0.244 3.756 22 N -0.885 5.885 23 C -0.278 4.278 24 H 0.264 0.736 25 H 0.030 0.970 26 H 0.041 0.959 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.132 0.868 33 H 0.112 0.888 34 H 0.104 0.896 35 H 0.392 0.608 36 H 0.392 0.608 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.980 -12.010 0.449 13.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.139 4.139 3 Si 0.723 3.277 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.078 0.922 9 C 0.137 3.863 10 N -0.284 5.284 11 C 0.087 3.913 12 C -0.145 4.145 13 C -0.139 4.139 14 C -0.151 4.151 15 C -0.138 4.138 16 C -0.127 4.127 17 C 0.170 3.830 18 C -0.250 4.250 19 C -0.058 4.058 20 C -0.291 4.291 21 C 0.140 3.860 22 N -0.425 5.425 23 C -0.306 4.306 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.059 0.941 27 H 0.138 0.862 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.150 0.850 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.219 0.781 36 H 0.219 0.781 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.666 -11.712 0.608 13.490 hybrid contribution 0.657 0.785 0.102 1.029 sum 7.323 -10.927 0.710 13.173 Atomic orbital electron populations 1.69923 1.05972 1.27202 1.50289 1.24934 0.94832 0.99145 0.95029 0.86600 0.79581 0.82807 0.78739 1.20069 1.21207 1.20274 1.21501 0.93548 0.90545 1.51177 0.92226 1.19335 0.86826 0.81906 0.98192 1.44620 1.47768 1.36327 0.99646 1.17510 0.93032 0.92826 0.87893 1.21513 1.00109 0.96817 0.96046 1.20929 0.97134 1.00235 0.95582 1.21034 0.96688 0.97489 0.99917 1.21013 1.00112 0.96882 0.95766 1.21638 0.96338 0.99443 0.95320 1.17558 0.89840 0.89695 0.85875 1.20730 1.09274 1.04513 0.90498 1.20549 0.94398 0.93896 0.96996 1.20140 1.10868 1.02792 0.95282 1.17361 0.89012 0.86260 0.93346 1.42378 1.57770 1.32236 1.10089 1.19919 1.11776 1.02731 0.96162 0.92608 0.95200 0.94145 0.86248 0.86467 0.86648 0.86413 0.85662 0.85012 0.86959 0.87764 0.78130 0.78132 0.87181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.73 13.29 55.43 0.74 -24.99 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.39 9.34 -34.44 -0.32 -14.71 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.26 6.48 4.79 -5.20 -0.02 6.45 16 10 N -0.58 -12.67 2.61 -112.96 -0.29 -12.97 16 11 C 0.18 3.52 3.57 -83.75 -0.30 3.22 16 12 C -0.13 -2.15 9.81 -39.38 -0.39 -2.54 16 13 C -0.12 -1.73 10.04 -39.61 -0.40 -2.13 16 14 C -0.13 -1.84 10.04 -39.54 -0.40 -2.24 16 15 C -0.12 -1.82 10.04 -39.61 -0.40 -2.21 16 16 C -0.11 -2.00 9.97 -39.38 -0.39 -2.40 16 17 C 0.27 5.72 6.52 -83.79 -0.55 5.17 16 18 C -0.23 -4.69 9.16 -39.34 -0.36 -5.05 16 19 C -0.04 -0.69 10.03 -39.64 -0.40 -1.08 16 20 C -0.27 -4.35 9.89 -39.34 -0.39 -4.74 16 21 C 0.24 3.99 6.75 -83.82 -0.57 3.42 16 22 N -0.89 -10.76 9.09 32.40 0.29 -10.46 16 23 C -0.28 -5.13 9.16 -39.18 -0.36 -5.49 16 24 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 25 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 26 H 0.04 1.07 6.43 -51.93 -0.33 0.74 16 27 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 28 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 32 H 0.13 2.99 6.25 -52.49 -0.33 2.66 16 33 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.10 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.39 3.83 8.84 -40.82 -0.36 3.47 16 36 H 0.39 4.18 8.84 -40.82 -0.36 3.82 16 37 H 0.11 1.98 6.87 -52.49 -0.36 1.62 16 LS Contribution 318.21 15.07 4.80 4.80 Total: -1.00 -29.50 318.21 -9.49 -38.99 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -4.67 Total: 10.96 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -5.33 Total: -22.69 kcal Atomic # 7 Polarization: -49.15 SS G_CDS: 0.74 Total: -48.42 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.50 -9.49 -38.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036720290.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.110 kcal (2) G-P(sol) polarization free energy of solvation -29.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds