Wall clock time and date at job start Mon Mar 30 2020 07:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38084 * 119.57393 * 2 1 4 4 C 1.38835 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38349 * 118.50866 * 359.97438 * 4 3 2 6 6 C 1.39098 * 119.09679 * 0.02562 * 5 4 3 7 7 N 1.39088 * 119.70622 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99904 * 171.88384 * 7 6 5 9 9 C 1.50697 * 109.47146 * 269.99762 * 8 7 6 10 10 H 1.08003 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00258 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00328 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99915 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47638 * 89.99506 * 13 11 9 15 15 H 1.48500 * 109.46951 * 209.99663 * 13 11 9 16 16 H 1.48503 * 109.46593 * 329.99374 * 13 11 9 17 17 C 1.39763 * 119.99615 * 351.88086 * 7 6 5 18 18 C 1.38909 * 120.07648 * 271.24023 * 17 7 6 19 19 C 1.38098 * 119.92548 * 180.02562 * 18 17 7 20 20 C 1.38285 * 120.07748 * 0.02562 * 19 18 17 21 21 C 1.38289 * 120.14674 * 0.25665 * 20 19 18 22 22 C 1.38100 * 120.07454 * 359.44264 * 21 20 19 23 23 N 1.31932 * 119.57406 * 180.25570 * 2 1 3 24 24 H 1.09000 * 109.47582 * 90.00091 * 1 2 3 25 25 H 1.09005 * 109.47401 * 209.99921 * 1 2 3 26 26 H 1.09001 * 109.47173 * 329.99813 * 1 2 3 27 27 H 1.07996 * 120.33216 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.74713 * 179.97438 * 4 3 2 29 29 H 1.07994 * 120.45267 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47238 * 29.99863 * 8 7 6 31 31 H 1.09003 * 109.47018 * 150.00272 * 8 7 6 32 32 H 0.96993 * 120.00007 * 179.97438 * 12 11 9 33 33 H 1.07999 * 120.03685 * 0.02562 * 18 17 7 34 34 H 1.08004 * 119.96150 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.93030 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.96427 * 179.72570 * 21 20 19 37 37 H 1.08000 * 120.03848 * 180.25858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1884 1.2009 0.0000 4 6 3.5768 1.1950 -0.0005 5 6 4.2319 -0.0236 -0.0005 6 6 3.4816 -1.1949 -0.0005 7 7 4.1272 -2.4269 -0.0010 8 6 3.3546 -3.6587 0.1781 9 6 3.2680 -3.9883 1.6460 10 1 3.7407 -3.3443 2.3729 11 6 2.5843 -5.1113 2.0613 12 7 2.5091 -5.3992 3.3424 13 14 1.7661 -6.2247 0.8041 14 1 2.7255 -7.2724 0.3718 15 1 0.5735 -6.8665 1.4134 16 1 1.3485 -5.4200 -0.3721 17 6 5.5128 -2.4896 -0.1725 18 6 6.0531 -2.5734 -1.4494 19 6 7.4227 -2.6358 -1.6153 20 6 8.2560 -2.6154 -0.5119 21 6 7.7212 -2.5379 0.7610 22 6 6.3528 -2.4690 0.9337 23 7 2.1581 -1.1474 -0.0051 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6469 2.1353 -0.0004 28 1 4.1329 2.1208 -0.0010 29 1 5.3110 -0.0649 -0.0005 30 1 2.3507 -3.5195 -0.2229 31 1 3.8465 -4.4760 -0.3493 32 1 2.0279 -6.1891 3.6345 33 1 5.4029 -2.5898 -2.3116 34 1 7.8435 -2.7006 -2.6078 35 1 9.3268 -2.6647 -0.6443 36 1 8.3746 -2.5267 1.6209 37 1 5.9359 -2.4043 1.9279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037670411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:47 Heat of formation + Delta-G solvation = 76.316178 kcal Electronic energy + Delta-G solvation = -19829.169520 eV Core-core repulsion = 16957.658167 eV Total energy + Delta-G solvation = -2871.511353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.04630 -38.76417 -35.85252 -32.74278 -32.19803 -31.26568 -30.63832 -29.50631 -27.74279 -26.28061 -22.95158 -22.75213 -22.23070 -21.25360 -20.14734 -17.27821 -16.84812 -16.22684 -15.90586 -15.43794 -14.93727 -14.65191 -14.04581 -13.94449 -13.67572 -13.40625 -13.11902 -12.59412 -12.47082 -12.31573 -12.10088 -11.90844 -11.66107 -11.49213 -11.25259 -11.10138 -10.84491 -10.52353 -10.21232 -9.61644 -9.32927 -8.96112 -8.76765 -8.66027 -8.56976 -8.33766 -6.90530 -6.06621 -4.04316 1.56461 1.67786 1.77962 1.98916 3.28588 3.35380 3.40441 3.62613 4.03606 4.41324 4.42294 4.95723 5.15651 5.18012 5.22961 5.25875 5.34945 5.52585 5.62551 5.70909 5.72430 5.85817 5.88833 5.91873 6.04890 6.08472 6.30539 6.37937 6.52416 6.60275 6.71194 6.75134 6.76148 6.89467 6.98543 7.15770 7.20596 7.62859 7.88052 8.12527 8.52780 8.88062 8.97551 9.53789 11.06720 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.009738 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.770485 B = 2874.655237 C = 4810.848661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.174 3.826 3 C -0.251 4.251 4 C -0.037 4.037 5 C -0.250 4.250 6 C 0.429 3.571 7 N -0.555 5.555 8 C 0.228 3.772 9 C -0.523 4.523 10 H 0.073 0.927 11 C 0.073 3.927 12 N -0.899 5.899 13 Si 0.871 3.129 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.262 1.262 17 C 0.170 3.830 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.127 4.127 21 C -0.116 4.116 22 C -0.102 4.102 23 N -0.523 5.523 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.070 0.930 27 H 0.122 0.878 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.051 0.949 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.528 10.423 -9.107 14.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.034 3.966 3 C -0.274 4.274 4 C -0.063 4.063 5 C -0.275 4.275 6 C 0.195 3.805 7 N -0.261 5.261 8 C 0.109 3.891 9 C -0.562 4.562 10 H 0.091 0.909 11 C -0.129 4.129 12 N -0.537 5.537 13 Si 0.698 3.302 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.187 1.187 17 C 0.078 3.922 18 C -0.143 4.143 19 C -0.138 4.138 20 C -0.145 4.145 21 C -0.135 4.135 22 C -0.121 4.121 23 N -0.240 5.240 24 H 0.091 0.909 25 H 0.097 0.903 26 H 0.089 0.911 27 H 0.140 0.860 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.140 0.860 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 5.042 9.293 -8.981 13.872 hybrid contribution 0.077 -0.043 -0.344 0.355 sum 5.119 9.250 -9.325 14.097 Atomic orbital electron populations 1.20689 0.89588 1.03243 1.02463 1.20905 0.96233 0.87606 0.91860 1.21453 0.94680 0.98469 1.12840 1.21124 0.94188 0.96988 0.93953 1.21351 1.00436 0.92158 1.13584 1.18197 0.88104 0.85295 0.88911 1.44043 1.02921 1.04602 1.74578 1.19728 0.91806 0.79810 0.97789 1.21333 1.34371 1.09700 0.90751 0.90877 1.24811 0.95681 0.97289 0.95093 1.69895 1.42714 1.27052 1.14074 0.86911 0.79635 0.81266 0.82358 1.20241 1.20983 1.18696 1.17441 0.83139 0.99295 0.92317 1.21453 0.95321 1.00782 0.96737 1.20927 0.92918 1.01303 0.98643 1.21097 0.99424 1.01294 0.92722 1.21058 0.94735 1.00540 0.97180 1.21693 0.93119 0.97756 0.99554 1.67031 1.07783 1.29322 1.19914 0.90927 0.90345 0.91126 0.86042 0.85861 0.85862 0.93071 0.96249 0.92654 0.86225 0.86218 0.86364 0.86032 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.44 10.17 36.00 0.37 -1.08 16 2 C 0.17 3.10 6.78 -82.61 -0.56 2.54 16 3 C -0.25 -3.86 9.73 -39.42 -0.38 -4.25 16 4 C -0.04 -0.56 10.17 -39.32 -0.40 -0.96 16 5 C -0.25 -4.49 9.34 -39.22 -0.37 -4.85 16 6 C 0.43 9.09 7.33 -154.92 -1.14 7.96 16 7 N -0.55 -12.22 2.59 -114.88 -0.30 -12.52 16 8 C 0.23 5.72 4.31 -5.20 -0.02 5.70 16 9 C -0.52 -15.05 9.94 -34.44 -0.34 -15.39 16 10 H 0.07 2.31 8.06 -52.48 -0.42 1.89 16 11 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16 12 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 13 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 16 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 17 C 0.17 3.24 3.55 -83.74 -0.30 2.94 16 18 C -0.12 -2.01 9.97 -39.38 -0.39 -2.40 16 19 C -0.12 -1.61 10.04 -39.62 -0.40 -2.00 16 20 C -0.13 -1.65 10.04 -39.55 -0.40 -2.05 16 21 C -0.12 -1.71 10.04 -39.61 -0.40 -2.10 16 22 C -0.10 -1.85 9.82 -39.38 -0.39 -2.23 16 23 N -0.52 -11.34 8.99 -8.64 -0.08 -11.41 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 26 H 0.07 0.80 8.08 -51.93 -0.42 0.38 16 27 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 29 H 0.12 2.08 6.89 -52.49 -0.36 1.72 16 30 H 0.05 1.34 6.32 -51.93 -0.33 1.01 16 31 H 0.02 0.48 7.48 -51.93 -0.39 0.09 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.12 1.87 8.06 -52.49 -0.42 1.44 16 34 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 36 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 37 H 0.13 2.59 8.06 -52.49 -0.42 2.17 16 LS Contribution 318.27 15.07 4.80 4.80 Total: -1.00 -32.50 318.27 -9.58 -42.08 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -4.89 Total: 3.10 kcal Atomic # 6 Polarization: -10.92 SS G_CDS: -5.21 Total: -16.13 kcal Atomic # 7 Polarization: -51.30 SS G_CDS: 0.40 Total: -50.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.50 -9.58 -42.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037670411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.398 kcal (2) G-P(sol) polarization free energy of solvation -32.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds