Wall clock time and date at job start Mon Mar 30 2020 07:43:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38084 * 119.57393 * 2 1 4 4 C 1.38835 * 119.32770 * 180.02562 * 3 2 1 5 5 C 1.38349 * 118.50866 * 359.97438 * 4 3 2 6 6 C 1.39098 * 119.09679 * 0.02562 * 5 4 3 7 7 N 1.39088 * 119.70622 * 179.97438 * 6 5 4 8 8 C 1.46497 * 119.99904 * 171.88384 * 7 6 5 9 9 C 1.50697 * 109.47146 * 269.99762 * 8 7 6 10 10 H 1.08003 * 119.99815 * 0.02562 * 9 8 7 11 11 C 1.37873 * 120.00258 * 179.97438 * 9 8 7 12 12 N 1.31521 * 120.00328 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 119.99915 * 0.02562 * 11 9 8 14 14 H 1.48495 * 109.47638 * 89.99506 * 13 11 9 15 15 H 1.48500 * 109.46951 * 209.99663 * 13 11 9 16 16 H 1.48503 * 109.46593 * 329.99374 * 13 11 9 17 17 C 1.39763 * 119.99615 * 351.88086 * 7 6 5 18 18 C 1.38909 * 120.07648 * 271.24023 * 17 7 6 19 19 C 1.38098 * 119.92548 * 180.02562 * 18 17 7 20 20 C 1.38285 * 120.07748 * 0.02562 * 19 18 17 21 21 C 1.38289 * 120.14674 * 0.25665 * 20 19 18 22 22 C 1.38100 * 120.07454 * 359.44264 * 21 20 19 23 23 N 1.31932 * 119.57406 * 180.25570 * 2 1 3 24 24 H 1.09000 * 109.47582 * 90.00091 * 1 2 3 25 25 H 1.09005 * 109.47401 * 209.99921 * 1 2 3 26 26 H 1.09001 * 109.47173 * 329.99813 * 1 2 3 27 27 H 1.07996 * 120.33216 * 359.97438 * 3 2 1 28 28 H 1.07998 * 120.74713 * 179.97438 * 4 3 2 29 29 H 1.07994 * 120.45267 * 180.02562 * 5 4 3 30 30 H 1.08995 * 109.47238 * 29.99863 * 8 7 6 31 31 H 1.09003 * 109.47018 * 150.00272 * 8 7 6 32 32 H 0.96993 * 120.00007 * 179.97438 * 12 11 9 33 33 H 1.07999 * 120.03685 * 0.02562 * 18 17 7 34 34 H 1.08004 * 119.96150 * 180.02562 * 19 18 17 35 35 H 1.08003 * 119.93030 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.96427 * 179.72570 * 21 20 19 37 37 H 1.08000 * 120.03848 * 180.25858 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1884 1.2009 0.0000 4 6 3.5768 1.1950 -0.0005 5 6 4.2319 -0.0236 -0.0005 6 6 3.4816 -1.1949 -0.0005 7 7 4.1272 -2.4269 -0.0010 8 6 3.3546 -3.6587 0.1781 9 6 3.2680 -3.9883 1.6460 10 1 3.7407 -3.3443 2.3729 11 6 2.5843 -5.1113 2.0613 12 7 2.5091 -5.3992 3.3424 13 14 1.7661 -6.2247 0.8041 14 1 2.7255 -7.2724 0.3718 15 1 0.5735 -6.8665 1.4134 16 1 1.3485 -5.4200 -0.3721 17 6 5.5128 -2.4896 -0.1725 18 6 6.0531 -2.5734 -1.4494 19 6 7.4227 -2.6358 -1.6153 20 6 8.2560 -2.6154 -0.5119 21 6 7.7212 -2.5379 0.7610 22 6 6.3528 -2.4690 0.9337 23 7 2.1581 -1.1474 -0.0051 24 1 -0.3634 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.6469 2.1353 -0.0004 28 1 4.1329 2.1208 -0.0010 29 1 5.3110 -0.0649 -0.0005 30 1 2.3507 -3.5195 -0.2229 31 1 3.8465 -4.4760 -0.3493 32 1 2.0279 -6.1891 3.6345 33 1 5.4029 -2.5898 -2.3116 34 1 7.8435 -2.7006 -2.6078 35 1 9.3268 -2.6647 -0.6443 36 1 8.3746 -2.5267 1.6209 37 1 5.9359 -2.4043 1.9279 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037670411.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:47 Heat of formation + Delta-G solvation = 58.114372 kcal Electronic energy + Delta-G solvation = -19829.958810 eV Core-core repulsion = 16957.658167 eV Total energy + Delta-G solvation = -2872.300643 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.43357 -40.03132 -37.32164 -34.82130 -33.62410 -32.59577 -31.84185 -31.19477 -29.22782 -27.76983 -24.66925 -24.15184 -23.45165 -22.70920 -21.56219 -19.07860 -18.61770 -17.73302 -17.21342 -16.67688 -16.44884 -16.24193 -15.67926 -15.25378 -14.99280 -14.87080 -14.47506 -14.31329 -13.91273 -13.67955 -13.48257 -13.39528 -13.04801 -13.02160 -12.67427 -12.56168 -12.41117 -12.18268 -11.96913 -11.70843 -10.87176 -10.83483 -10.41484 -10.18038 -9.86812 -9.61408 -8.43034 -8.33626 -6.37937 0.34460 0.42742 0.47463 0.65680 1.28518 1.31478 1.43390 2.15700 2.29126 2.82531 2.99354 3.04522 3.64026 3.98877 4.05262 4.10331 4.19509 4.27938 4.38086 4.47565 4.56575 4.61619 4.67283 4.78170 4.82540 4.83886 4.88454 4.98911 5.11871 5.20910 5.26723 5.42246 5.43148 5.48647 5.58222 5.70488 5.83435 5.93959 6.12843 6.48508 6.60331 6.63359 7.23797 7.48225 8.82561 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.010751 B = 0.009738 C = 0.005819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2603.770485 B = 2874.655237 C = 4810.848661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.147 3.853 3 C -0.238 4.238 4 C -0.031 4.031 5 C -0.257 4.257 6 C 0.395 3.605 7 N -0.569 5.569 8 C 0.246 3.754 9 C -0.523 4.523 10 H 0.023 0.977 11 C 0.014 3.986 12 N -0.945 5.945 13 Si 0.944 3.056 14 H -0.261 1.261 15 H -0.277 1.277 16 H -0.253 1.253 17 C 0.139 3.861 18 C -0.132 4.132 19 C -0.105 4.105 20 C -0.113 4.113 21 C -0.114 4.114 22 C -0.131 4.131 23 N -0.571 5.571 24 H 0.091 0.909 25 H 0.053 0.947 26 H 0.103 0.897 27 H 0.164 0.836 28 H 0.167 0.833 29 H 0.128 0.872 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.268 0.732 33 H 0.121 0.879 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.143 0.857 37 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.720 11.822 -11.696 17.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.008 3.992 3 C -0.260 4.260 4 C -0.056 4.056 5 C -0.282 4.282 6 C 0.162 3.838 7 N -0.277 5.277 8 C 0.125 3.875 9 C -0.562 4.562 10 H 0.041 0.959 11 C -0.184 4.184 12 N -0.586 5.586 13 Si 0.767 3.233 14 H -0.186 1.186 15 H -0.202 1.202 16 H -0.177 1.177 17 C 0.048 3.952 18 C -0.151 4.151 19 C -0.124 4.124 20 C -0.131 4.131 21 C -0.132 4.132 22 C -0.151 4.151 23 N -0.290 5.290 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.121 0.879 27 H 0.182 0.818 28 H 0.184 0.816 29 H 0.145 0.855 30 H 0.056 0.944 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.177 0.823 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.245 10.738 -11.579 16.982 hybrid contribution -0.225 -0.307 0.519 0.644 sum 6.020 10.431 -11.060 16.351 Atomic orbital electron populations 1.20771 0.87392 1.03619 1.03761 1.21631 0.97951 0.87703 0.91867 1.21919 0.94912 0.99113 1.10041 1.21649 0.94629 0.97452 0.91904 1.21484 1.00667 0.92228 1.13805 1.18596 0.88588 0.85943 0.90630 1.43907 1.04045 1.03892 1.75822 1.19229 0.91858 0.81759 0.94689 1.21488 1.33641 1.08951 0.92140 0.95877 1.25768 0.96315 0.99011 0.97309 1.70051 1.44077 1.28071 1.16402 0.85760 0.78791 0.79109 0.79632 1.18585 1.20181 1.17656 1.17717 0.81897 1.01798 0.93750 1.21555 0.96932 1.01271 0.95362 1.21381 0.91458 0.98745 1.00768 1.21565 1.01543 0.98635 0.91307 1.21327 0.93133 0.99431 0.99315 1.21545 0.95053 1.00755 0.97701 1.66983 1.08539 1.31881 1.21558 0.89080 0.92755 0.87874 0.81850 0.81582 0.85457 0.94398 0.96017 0.92351 0.86092 0.82268 0.82010 0.83894 0.89192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.68 10.17 71.23 0.72 -1.95 16 2 C 0.15 5.21 6.78 42.51 0.29 5.49 16 3 C -0.24 -6.72 9.73 22.38 0.22 -6.51 16 4 C -0.03 -0.88 10.17 22.44 0.23 -0.66 16 5 C -0.26 -9.33 9.34 22.50 0.21 -9.12 16 6 C 0.40 17.55 7.33 133.01 0.98 18.53 16 7 N -0.57 -26.60 2.59 -517.37 -1.34 -27.94 16 8 C 0.25 13.02 4.31 85.63 0.37 13.39 16 9 C -0.52 -32.25 9.94 25.60 0.25 -32.00 16 10 H 0.02 1.60 8.06 -2.91 -0.02 1.58 16 11 C 0.01 0.83 5.47 84.65 0.46 1.29 16 12 N -0.95 -61.23 13.96 21.45 0.30 -60.94 16 13 Si 0.94 46.18 27.47 68.60 1.88 48.07 16 14 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 15 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 16 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 17 C 0.14 5.54 3.55 38.20 0.14 5.68 16 18 C -0.13 -4.21 9.97 22.40 0.22 -3.99 16 19 C -0.11 -2.49 10.04 22.25 0.22 -2.27 16 20 C -0.11 -2.53 10.04 22.29 0.22 -2.31 16 21 C -0.11 -3.23 10.04 22.25 0.22 -3.01 16 22 C -0.13 -5.04 9.82 22.40 0.22 -4.82 16 23 N -0.57 -25.78 8.99 -181.26 -1.63 -27.41 16 24 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 25 H 0.05 1.72 8.14 -2.38 -0.02 1.70 16 26 H 0.10 2.08 8.08 -2.39 -0.02 2.06 16 27 H 0.16 3.21 8.06 -2.91 -0.02 3.18 16 28 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 29 H 0.13 4.39 6.89 -2.91 -0.02 4.37 16 30 H 0.04 2.08 6.32 -2.39 -0.02 2.07 16 31 H 0.02 1.12 7.48 -2.39 -0.02 1.10 16 32 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 33 H 0.12 3.74 8.06 -2.91 -0.02 3.72 16 34 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 35 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 37 H 0.09 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -78.03 318.27 5.19 -72.84 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 1.00 Total: 17.63 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.98 Total: -22.24 kcal Atomic # 7 Polarization: -113.62 SS G_CDS: -2.67 Total: -116.29 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 1.88 Total: 48.07 kcal Total: -78.03 5.19 -72.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037670411.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.953 kcal (2) G-P(sol) polarization free energy of solvation -78.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds