Wall clock time and date at job start Mon Mar 30 2020 07:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47312 * 2 1 4 4 C 1.50698 * 109.47655 * 120.00563 * 2 1 3 5 5 H 1.07992 * 120.00436 * 120.00059 * 4 2 1 6 6 C 1.37881 * 119.99431 * 300.00153 * 4 2 1 7 7 N 1.31510 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99728 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47000 * 59.99745 * 8 6 4 10 10 H 1.48497 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47118 * 299.99812 * 8 6 4 12 12 O 1.42907 * 109.47099 * 240.00326 * 2 1 3 13 13 C 1.35875 * 116.99542 * 84.77241 * 12 2 1 14 14 C 1.38830 * 119.93786 * 354.62751 * 13 12 2 15 15 C 1.37906 * 120.06354 * 179.97438 * 14 13 12 16 16 C 1.39376 * 119.93590 * 359.97438 * 15 14 13 17 17 C 1.48363 * 120.06860 * 179.97438 * 16 15 14 18 18 C 1.39354 * 120.12755 * 180.02562 * 17 16 15 19 19 C 1.38009 * 119.87796 * 180.02562 * 18 17 16 20 20 C 1.38326 * 120.12433 * 359.97438 * 19 18 17 21 21 C 1.38329 * 120.24708 * 0.27665 * 20 19 18 22 22 C 1.38017 * 120.11745 * 359.48866 * 21 20 19 23 23 C 1.39378 * 119.86988 * 0.25882 * 16 15 14 24 24 C 1.37903 * 119.93381 * 359.48850 * 23 16 15 25 25 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46874 * 299.99525 * 1 2 3 27 27 H 1.08996 * 109.47479 * 59.99375 * 1 2 3 28 28 H 0.96998 * 119.99930 * 180.02562 * 7 6 4 29 29 H 1.07992 * 119.96874 * 359.97438 * 14 13 12 30 30 H 1.08002 * 120.03485 * 180.02562 * 15 14 13 31 31 H 1.07998 * 120.05471 * 359.97438 * 18 17 16 32 32 H 1.07998 * 119.93948 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.87736 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.93813 * 179.72469 * 21 20 19 35 35 H 1.08002 * 120.05865 * 180.23013 * 22 21 20 36 36 H 1.08005 * 120.03647 * 179.74301 * 23 16 15 37 37 H 1.08001 * 119.97123 * 180.25432 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1211 4.0079 10 1 1.8271 -0.4202 5.2203 11 1 1.8260 -2.5204 4.0076 12 8 2.0063 -0.6736 -1.1669 13 6 2.1079 0.0615 -2.3051 14 6 1.6514 1.3724 -2.3263 15 6 1.7538 2.1210 -3.4799 16 6 2.3165 1.5604 -4.6252 17 6 2.4275 2.3629 -5.8681 18 6 2.9895 1.8035 -7.0141 19 6 3.0907 2.5548 -8.1673 20 6 2.6350 3.8607 -8.1872 21 6 2.0811 4.4229 -7.0512 22 6 1.9705 3.6792 -5.8938 23 6 2.7694 0.2425 -4.6023 24 6 2.6692 -0.4996 -3.4443 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.7095 1.1615 3.4844 29 1 1.2159 1.8064 -1.4385 30 1 1.3989 3.1410 -3.4958 31 1 3.3459 0.7841 -6.9994 32 1 3.5256 2.1221 -9.0561 33 1 2.7158 4.4449 -9.0920 34 1 1.7310 5.4443 -7.0711 35 1 1.5344 4.1178 -5.0085 36 1 3.2021 -0.1960 -5.4895 37 1 3.0237 -1.5195 -3.4247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041278667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:58 Heat of formation + Delta-G solvation = 3.582381 kcal Electronic energy + Delta-G solvation = -18910.261411 eV Core-core repulsion = 16003.303333 eV Total energy + Delta-G solvation = -2906.958078 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.85468 -38.81777 -36.73060 -33.44651 -31.92720 -31.38150 -30.44947 -29.48218 -27.79126 -25.36463 -23.48922 -23.18818 -21.75356 -20.98674 -20.09992 -17.81106 -16.73516 -16.62230 -15.81729 -15.31954 -14.76739 -14.32082 -14.14229 -14.06331 -13.90577 -13.69189 -13.10444 -13.07616 -12.72426 -12.19882 -11.97323 -11.74204 -11.39193 -11.30450 -11.08030 -11.00334 -10.84227 -10.62195 -10.30445 -10.15017 -10.02774 -9.16127 -8.97908 -8.88501 -8.63722 -8.53470 -7.19563 -6.24730 -4.30576 0.92780 1.38118 1.75495 2.21836 3.23850 3.27324 3.30441 3.77232 4.12564 4.35240 4.49109 4.77995 4.80072 4.91806 5.04506 5.09148 5.26394 5.33036 5.43426 5.44054 5.70515 5.85630 5.92532 6.00983 6.08026 6.33500 6.39812 6.45069 6.48227 6.51467 6.69543 6.74044 6.80606 6.88594 6.97264 6.99814 7.17242 7.29738 7.60574 7.74660 8.05684 8.46469 8.81377 9.35468 10.83007 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.044883 B = 0.003466 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.693920 B = 8076.679454 C = 8417.886981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.207 3.793 3 H 0.035 0.965 4 C -0.519 4.519 5 H 0.068 0.932 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.912 3.088 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.274 1.274 12 O -0.312 6.312 13 C 0.167 3.833 14 C -0.213 4.213 15 C -0.064 4.064 16 C -0.121 4.121 17 C -0.015 4.015 18 C -0.124 4.124 19 C -0.116 4.116 20 C -0.136 4.136 21 C -0.115 4.115 22 C -0.123 4.123 23 C -0.068 4.068 24 C -0.172 4.172 25 H 0.039 0.961 26 H 0.098 0.902 27 H 0.018 0.982 28 H 0.267 0.733 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.124 0.876 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.123 0.877 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 4.799 -16.976 17.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.153 3.847 3 H 0.053 0.947 4 C -0.556 4.556 5 H 0.087 0.913 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.739 3.261 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.199 1.199 12 O -0.224 6.224 13 C 0.118 3.882 14 C -0.231 4.231 15 C -0.082 4.082 16 C -0.122 4.122 17 C -0.015 4.015 18 C -0.142 4.142 19 C -0.134 4.134 20 C -0.154 4.154 21 C -0.133 4.133 22 C -0.141 4.141 23 C -0.086 4.086 24 C -0.191 4.191 25 H 0.058 0.942 26 H 0.116 0.884 27 H 0.037 0.963 28 H 0.077 0.923 29 H 0.156 0.844 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 1.891 4.708 -16.753 17.505 hybrid contribution 0.120 -0.139 0.919 0.937 sum 2.011 4.570 -15.834 16.603 Atomic orbital electron populations 1.22330 0.98092 1.00647 1.01300 1.20326 0.91350 0.93472 0.79512 0.94720 1.20956 1.32320 1.13544 0.88822 0.91344 1.24869 0.94829 0.95096 0.99083 1.69858 1.36150 1.22629 1.24347 0.86326 0.79275 0.79603 0.80931 1.19934 1.21013 1.19915 1.86164 1.79273 1.39831 1.17163 1.19392 0.90839 0.90042 0.87881 1.21482 1.06828 0.94872 0.99937 1.20962 0.96562 0.98993 0.91662 1.18482 1.06235 0.94395 0.93060 1.18838 0.96677 0.93303 0.92718 1.21228 1.00316 1.00102 0.92535 1.21044 0.99982 0.94526 0.97867 1.21115 1.00369 0.95656 0.98289 1.21061 0.99536 0.99661 0.93083 1.21266 1.00606 0.93824 0.98422 1.20871 0.97766 0.92940 0.96998 1.20368 1.05875 1.01247 0.91597 0.94195 0.88375 0.96299 0.92330 0.84371 0.86153 0.85853 0.86257 0.86468 0.86216 0.85792 0.85892 0.85465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.94 37.15 0.33 -3.67 16 2 C 0.21 5.30 2.22 -27.89 -0.06 5.23 16 3 H 0.04 0.93 6.31 -51.93 -0.33 0.60 16 4 C -0.52 -14.37 8.89 -34.44 -0.31 -14.67 16 5 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.53 11.32 55.43 0.63 -23.90 16 8 Si 0.91 20.87 29.54 -169.99 -5.02 15.85 16 9 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 O -0.31 -7.47 9.78 -19.35 -0.19 -7.65 16 13 C 0.17 3.42 6.60 -39.14 -0.26 3.16 16 14 C -0.21 -4.06 8.22 -39.48 -0.32 -4.38 16 15 C -0.06 -1.04 9.42 -39.28 -0.37 -1.41 16 16 C -0.12 -1.86 5.88 -104.88 -0.62 -2.48 16 17 C -0.02 -0.21 5.88 -104.90 -0.62 -0.82 16 18 C -0.12 -1.46 9.43 -39.25 -0.37 -1.83 16 19 C -0.12 -1.19 10.03 -39.63 -0.40 -1.59 16 20 C -0.14 -1.36 10.04 -39.52 -0.40 -1.75 16 21 C -0.12 -1.22 10.03 -39.63 -0.40 -1.62 16 22 C -0.12 -1.51 9.43 -39.25 -0.37 -1.88 16 23 C -0.07 -1.02 9.42 -39.28 -0.37 -1.39 16 24 C -0.17 -2.99 9.97 -39.48 -0.39 -3.38 16 25 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.10 2.52 6.07 -51.93 -0.32 2.21 16 27 H 0.02 0.40 6.89 -51.93 -0.36 0.04 16 28 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 29 H 0.14 2.77 5.40 -52.49 -0.28 2.49 16 30 H 0.12 1.66 6.20 -52.49 -0.33 1.33 16 31 H 0.12 1.26 6.20 -52.49 -0.33 0.94 16 32 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 35 H 0.12 1.39 6.20 -52.49 -0.33 1.06 16 36 H 0.12 1.47 6.20 -52.48 -0.33 1.14 16 37 H 0.13 2.02 8.06 -52.49 -0.42 1.59 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -28.76 307.63 -9.20 -37.96 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.25 Total: 3.98 kcal Atomic # 6 Polarization: -25.87 SS G_CDS: -5.01 Total: -30.88 kcal Atomic # 7 Polarization: -24.53 SS G_CDS: 0.63 Total: -23.90 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: -0.19 Total: -7.65 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -28.76 -9.20 -37.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041278667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.547 kcal (2) G-P(sol) polarization free energy of solvation -28.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds