Wall clock time and date at job start Mon Mar 30 2020 07:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09004 * 109.47312 * 2 1 4 4 C 1.50698 * 109.47655 * 120.00563 * 2 1 3 5 5 H 1.07992 * 120.00436 * 120.00059 * 4 2 1 6 6 C 1.37881 * 119.99431 * 300.00153 * 4 2 1 7 7 N 1.31510 * 120.00126 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 119.99728 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47000 * 59.99745 * 8 6 4 10 10 H 1.48497 * 109.46970 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47118 * 299.99812 * 8 6 4 12 12 O 1.42907 * 109.47099 * 240.00326 * 2 1 3 13 13 C 1.35875 * 116.99542 * 84.77241 * 12 2 1 14 14 C 1.38830 * 119.93786 * 354.62751 * 13 12 2 15 15 C 1.37906 * 120.06354 * 179.97438 * 14 13 12 16 16 C 1.39376 * 119.93590 * 359.97438 * 15 14 13 17 17 C 1.48363 * 120.06860 * 179.97438 * 16 15 14 18 18 C 1.39354 * 120.12755 * 180.02562 * 17 16 15 19 19 C 1.38009 * 119.87796 * 180.02562 * 18 17 16 20 20 C 1.38326 * 120.12433 * 359.97438 * 19 18 17 21 21 C 1.38329 * 120.24708 * 0.27665 * 20 19 18 22 22 C 1.38017 * 120.11745 * 359.48866 * 21 20 19 23 23 C 1.39378 * 119.86988 * 0.25882 * 16 15 14 24 24 C 1.37903 * 119.93381 * 359.48850 * 23 16 15 25 25 H 1.08998 * 109.47307 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.46874 * 299.99525 * 1 2 3 27 27 H 1.08996 * 109.47479 * 59.99375 * 1 2 3 28 28 H 0.96998 * 119.99930 * 180.02562 * 7 6 4 29 29 H 1.07992 * 119.96874 * 359.97438 * 14 13 12 30 30 H 1.08002 * 120.03485 * 180.02562 * 15 14 13 31 31 H 1.07998 * 120.05471 * 359.97438 * 18 17 16 32 32 H 1.07998 * 119.93948 * 180.02562 * 19 18 17 33 33 H 1.08001 * 119.87736 * 180.02562 * 20 19 18 34 34 H 1.07995 * 119.93813 * 179.72469 * 21 20 19 35 35 H 1.08002 * 120.05865 * 180.23013 * 22 21 20 36 36 H 1.08005 * 120.03647 * 179.74301 * 23 16 15 37 37 H 1.08001 * 119.97123 * 180.25432 * 24 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9435 0.8300 2.6034 8 14 2.3215 -1.1206 4.0078 9 1 3.8065 -1.1211 4.0079 10 1 1.8271 -0.4202 5.2203 11 1 1.8260 -2.5204 4.0076 12 8 2.0063 -0.6736 -1.1669 13 6 2.1079 0.0615 -2.3051 14 6 1.6514 1.3724 -2.3263 15 6 1.7538 2.1210 -3.4799 16 6 2.3165 1.5604 -4.6252 17 6 2.4275 2.3629 -5.8681 18 6 2.9895 1.8035 -7.0141 19 6 3.0907 2.5548 -8.1673 20 6 2.6350 3.8607 -8.1872 21 6 2.0811 4.4229 -7.0512 22 6 1.9705 3.6792 -5.8938 23 6 2.7694 0.2425 -4.6023 24 6 2.6692 -0.4996 -3.4443 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 0.7095 1.1615 3.4844 29 1 1.2159 1.8064 -1.4385 30 1 1.3989 3.1410 -3.4958 31 1 3.3459 0.7841 -6.9994 32 1 3.5256 2.1221 -9.0561 33 1 2.7158 4.4449 -9.0920 34 1 1.7310 5.4443 -7.0711 35 1 1.5344 4.1178 -5.0085 36 1 3.2021 -0.1960 -5.4895 37 1 3.0237 -1.5195 -3.4247 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041278667.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:19:57 Heat of formation + Delta-G solvation = -9.840748 kcal Electronic energy + Delta-G solvation = -18910.843482 eV Core-core repulsion = 16003.303333 eV Total energy + Delta-G solvation = -2907.540149 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.17492 -39.98911 -38.14063 -35.40721 -33.11558 -32.50628 -31.71445 -31.14429 -29.02724 -27.41837 -24.76131 -24.34458 -23.12075 -22.20129 -21.48760 -19.20458 -18.57267 -17.95135 -16.97227 -16.85634 -16.27962 -15.92851 -15.41843 -15.28636 -15.08838 -14.82378 -14.52670 -14.17514 -13.96122 -13.77178 -13.52293 -13.18319 -12.97309 -12.94035 -12.74724 -12.51445 -12.24344 -12.04315 -11.93208 -11.81066 -11.47740 -11.04699 -10.61873 -10.08518 -9.96923 -9.80312 -8.53377 -8.29948 -6.45459 -0.14499 0.40928 0.55426 1.05109 1.40105 1.42973 1.51203 2.28876 2.70601 2.78056 3.00817 3.18891 3.73310 3.79573 3.92884 4.17049 4.19753 4.29469 4.36978 4.44722 4.52259 4.57952 4.68628 4.77963 4.83940 4.86543 4.98954 5.05802 5.20326 5.22172 5.35131 5.38473 5.46564 5.55932 5.62781 5.66491 5.69470 5.85462 5.91966 6.03312 6.15603 6.54450 6.87009 7.26089 8.76760 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.044883 B = 0.003466 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 623.693920 B = 8076.679454 C = 8417.886981 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.214 3.786 3 H 0.013 0.987 4 C -0.552 4.552 5 H 0.058 0.942 6 C 0.021 3.979 7 N -0.913 5.913 8 Si 0.977 3.023 9 H -0.269 1.269 10 H -0.274 1.274 11 H -0.268 1.268 12 O -0.335 6.335 13 C 0.120 3.880 14 C -0.224 4.224 15 C -0.071 4.071 16 C -0.106 4.106 17 C -0.048 4.048 18 C -0.128 4.128 19 C -0.120 4.120 20 C -0.130 4.130 21 C -0.123 4.123 22 C -0.135 4.135 23 C -0.064 4.064 24 C -0.171 4.171 25 H 0.034 0.966 26 H 0.080 0.920 27 H 0.035 0.965 28 H 0.271 0.729 29 H 0.118 0.882 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.147 0.853 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.161 0.839 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 5.344 -19.498 20.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.160 3.840 3 H 0.031 0.969 4 C -0.589 4.589 5 H 0.076 0.924 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.800 3.200 9 H -0.194 1.194 10 H -0.199 1.199 11 H -0.193 1.193 12 O -0.249 6.249 13 C 0.074 3.926 14 C -0.243 4.243 15 C -0.089 4.089 16 C -0.106 4.106 17 C -0.048 4.048 18 C -0.146 4.146 19 C -0.138 4.138 20 C -0.148 4.148 21 C -0.140 4.140 22 C -0.153 4.153 23 C -0.082 4.082 24 C -0.189 4.189 25 H 0.053 0.947 26 H 0.099 0.901 27 H 0.053 0.947 28 H 0.081 0.919 29 H 0.136 0.864 30 H 0.159 0.841 31 H 0.155 0.845 32 H 0.165 0.835 33 H 0.164 0.836 34 H 0.160 0.840 35 H 0.144 0.856 36 H 0.178 0.822 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 2.650 5.264 -19.302 20.182 hybrid contribution -0.081 -0.152 1.400 1.411 sum 2.569 5.112 -17.902 18.794 Atomic orbital electron populations 1.22133 0.97495 1.00145 1.01150 1.20021 0.91741 0.92173 0.80099 0.96927 1.21262 1.33270 1.13903 0.90486 0.92353 1.25720 0.94682 0.95698 1.01816 1.69961 1.36453 1.23459 1.25250 0.85321 0.78816 0.78620 0.77208 1.19446 1.19876 1.19294 1.86073 1.80610 1.40459 1.17768 1.19757 0.94088 0.90971 0.87805 1.21395 1.07587 0.94908 1.00368 1.21180 0.96763 0.99807 0.91106 1.18825 1.03668 0.94633 0.93464 1.18854 0.99428 0.93953 0.92518 1.21477 0.99673 1.00992 0.92410 1.21417 0.99479 0.94635 0.98265 1.21559 0.98440 0.95789 0.98997 1.21379 0.99325 1.00666 0.92671 1.21455 1.00645 0.93739 0.99418 1.21251 0.96966 0.92677 0.97264 1.20615 1.05054 1.02026 0.91245 0.94674 0.90125 0.94651 0.91944 0.86424 0.84101 0.84478 0.83495 0.83631 0.84022 0.85627 0.82211 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.67 8.94 71.98 0.64 -7.02 16 2 C 0.21 11.57 2.22 29.84 0.07 11.64 16 3 H 0.01 0.75 6.31 -2.38 -0.02 0.73 16 4 C -0.55 -31.84 8.89 25.60 0.23 -31.62 16 5 H 0.06 3.38 7.81 -2.91 -0.02 3.36 16 6 C 0.02 1.15 5.30 84.66 0.45 1.60 16 7 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 8 Si 0.98 43.24 29.54 68.60 2.03 45.26 16 9 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 12 O -0.33 -16.95 9.78 -92.15 -0.90 -17.85 16 13 C 0.12 5.14 6.60 22.56 0.15 5.29 16 14 C -0.22 -8.97 8.22 22.33 0.18 -8.78 16 15 C -0.07 -2.31 9.42 22.47 0.21 -2.10 16 16 C -0.11 -3.12 5.88 -20.03 -0.12 -3.23 16 17 C -0.05 -1.18 5.88 -20.04 -0.12 -1.30 16 18 C -0.13 -2.60 9.43 22.48 0.21 -2.39 16 19 C -0.12 -1.98 10.03 22.24 0.22 -1.76 16 20 C -0.13 -2.05 10.04 22.31 0.22 -1.83 16 21 C -0.12 -2.20 10.03 22.24 0.22 -1.98 16 22 C -0.13 -3.03 9.43 22.49 0.21 -2.82 16 23 C -0.06 -1.83 9.42 22.46 0.21 -1.61 16 24 C -0.17 -5.94 9.97 22.33 0.22 -5.72 16 25 H 0.03 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.08 4.34 6.07 -2.38 -0.01 4.32 16 27 H 0.03 1.60 6.89 -2.39 -0.02 1.58 16 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.12 5.10 5.40 -2.91 -0.02 5.08 16 30 H 0.14 3.87 6.20 -2.91 -0.02 3.85 16 31 H 0.14 2.29 6.20 -2.91 -0.02 2.28 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 34 H 0.14 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.13 2.65 6.20 -2.91 -0.02 2.64 16 36 H 0.16 3.30 6.20 -2.91 -0.02 3.28 16 37 H 0.14 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -64.23 307.63 5.67 -58.55 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: 1.08 Total: 18.94 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 3.22 Total: -53.64 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.24 Total: -51.27 kcal Atomic # 8 Polarization: -16.95 SS G_CDS: -0.90 Total: -17.85 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -64.23 5.67 -58.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041278667.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.713 kcal (2) G-P(sol) polarization free energy of solvation -64.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds