Wall clock time and date at job start Mon Mar 30 2020 07:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38098 * 120.04122 * 2 1 4 4 C 1.38291 * 120.07952 * 180.30132 * 3 2 1 5 5 C 1.38336 * 120.15214 * 359.44530 * 4 3 2 6 6 C 1.38058 * 120.07787 * 0.55976 * 5 4 3 7 7 C 1.38942 * 120.03732 * 180.02562 * 2 1 3 8 8 N 1.39821 * 120.07503 * 359.95426 * 7 2 1 9 9 N 1.39933 * 125.43007 * 48.51206 * 8 7 2 10 10 C 1.33018 * 108.23169 * 179.85478 * 9 8 7 11 11 C 1.41269 * 126.48556 * 180.14643 * 10 9 8 12 12 H 1.07996 * 119.99402 * 180.30307 * 11 10 9 13 13 C 1.39874 * 120.00096 * 0.29446 * 11 10 9 14 14 N 1.30874 * 120.00314 * 0.02562 * 13 11 10 15 15 Si 1.86801 * 119.99797 * 180.02562 * 13 11 10 16 16 H 1.48504 * 109.46967 * 0.02562 * 15 13 11 17 17 H 1.48493 * 109.47040 * 120.00113 * 15 13 11 18 18 H 1.48500 * 109.47310 * 240.00086 * 15 13 11 19 19 C 1.46373 * 107.01929 * 0.39444 * 10 9 8 20 20 C 1.34648 * 107.15528 * 359.74704 * 19 10 9 21 21 C 1.50699 * 125.77781 * 180.02562 * 20 19 10 22 22 C 1.52999 * 117.49720 * 33.87274 * 21 20 19 23 23 C 1.52993 * 117.49988 * 325.21429 * 21 20 19 24 24 H 1.08999 * 109.47454 * 86.22771 * 1 2 3 25 25 H 1.08998 * 109.47430 * 206.23654 * 1 2 3 26 26 H 1.09003 * 109.46965 * 326.23699 * 1 2 3 27 27 H 1.08002 * 119.96582 * 0.02562 * 3 2 1 28 28 H 1.07998 * 119.92593 * 179.70285 * 4 3 2 29 29 H 1.07998 * 119.96143 * 180.29944 * 5 4 3 30 30 H 1.08004 * 120.04033 * 179.70129 * 6 5 4 31 31 H 0.97002 * 120.00284 * 180.02562 * 14 13 11 32 32 H 1.08004 * 126.42607 * 179.76816 * 19 10 9 33 33 H 1.09000 * 115.54738 * 179.54298 * 21 20 19 34 34 H 1.09003 * 117.50153 * 359.97438 * 22 21 20 35 35 H 1.09004 * 117.49979 * 145.01933 * 22 21 20 36 36 H 1.08997 * 117.49997 * 214.97896 * 23 21 20 37 37 H 1.09007 * 117.49760 * 359.97364 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1955 0.0000 4 6 3.5813 1.1964 -0.0063 5 6 4.2770 0.0007 -0.0010 6 6 3.5923 -1.1982 -0.0011 7 6 2.2025 -1.2028 -0.0005 8 7 1.5058 -2.4151 -0.0001 9 7 0.4461 -2.7420 -0.8535 10 6 0.0411 -3.9747 -0.5608 11 6 -1.0045 -4.6869 -1.1895 12 1 -1.2495 -5.6866 -0.8626 13 6 -1.7224 -4.0972 -2.2351 14 7 -1.4252 -2.8858 -2.6314 15 14 -3.1054 -5.0387 -3.0659 16 1 -3.2410 -6.3770 -2.4366 17 1 -4.3775 -4.2884 -2.9114 18 1 -2.7975 -5.1990 -4.5098 19 6 0.8799 -4.4512 0.5400 20 6 1.7466 -3.4639 0.8350 21 6 2.8044 -3.5113 1.9073 22 6 3.4691 -4.8611 2.1846 23 6 2.4753 -4.2759 3.1910 24 1 -0.3634 0.0676 -1.0254 25 1 -0.3634 -0.9218 0.4543 26 1 -0.3633 0.8544 0.5712 27 1 1.6585 2.1309 0.0004 28 1 4.1194 2.1327 -0.0111 29 1 5.3569 0.0051 -0.0011 30 1 4.1361 -2.1313 -0.0019 31 1 -1.9233 -2.4767 -3.3563 32 1 0.8160 -5.4143 1.0246 33 1 3.4223 -2.6179 1.9980 34 1 3.1411 -5.7150 1.5918 35 1 4.5243 -4.8558 2.4581 36 1 2.8770 -3.8858 4.1262 37 1 1.4935 -4.7443 3.2601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041278714.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:46 Heat of formation + Delta-G solvation = 118.025451 kcal Electronic energy + Delta-G solvation = -19969.758877 eV Core-core repulsion = 17100.056174 eV Total energy + Delta-G solvation = -2869.702703 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.96323 -38.23122 -36.41071 -33.60371 -32.32463 -31.70626 -28.77331 -28.02249 -26.56857 -25.28390 -23.01024 -22.10870 -21.62657 -21.01816 -19.53514 -18.40212 -16.80913 -16.45925 -15.38421 -15.03780 -14.71221 -14.45909 -14.14915 -13.47613 -13.29206 -12.79976 -12.64914 -12.56650 -12.26517 -11.76313 -11.57244 -11.44333 -11.29703 -11.19852 -10.86656 -10.81565 -10.69514 -10.43024 -10.29860 -10.17207 -9.94460 -9.38029 -8.65027 -8.40378 -8.25481 -7.43620 -6.98486 -6.42272 -4.34489 1.65256 1.76197 3.08065 3.15125 3.19726 3.24134 3.88857 4.11240 4.12000 4.27944 4.44116 5.00589 5.20751 5.24725 5.28891 5.35819 5.42262 5.59860 5.63959 5.69461 5.84508 5.89177 5.99097 6.11718 6.24220 6.32565 6.32924 6.39151 6.46468 6.62459 6.75330 6.84351 6.93273 7.02787 7.18061 7.23542 7.33318 7.40711 7.72992 8.37030 8.67601 8.88087 9.13223 9.85286 10.53967 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016396 B = 0.007087 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.307388 B = 3949.701170 C = 5276.349693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.083 4.083 3 C -0.110 4.110 4 C -0.144 4.144 5 C -0.114 4.114 6 C -0.144 4.144 7 C 0.197 3.803 8 N -0.376 5.376 9 N -0.310 5.310 10 C 0.209 3.791 11 C -0.437 4.437 12 H 0.082 0.918 13 C 0.071 3.929 14 N -0.767 5.767 15 Si 0.908 3.092 16 H -0.263 1.263 17 H -0.277 1.277 18 H -0.277 1.277 19 C -0.281 4.281 20 C 0.087 3.913 21 C -0.094 4.094 22 C -0.168 4.168 23 C -0.169 4.169 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.120 0.880 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.271 0.729 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 3.593 6.754 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 C -0.128 4.128 4 C -0.163 4.163 5 C -0.133 4.133 6 C -0.165 4.165 7 C 0.102 3.898 8 N -0.151 5.151 9 N -0.135 5.135 10 C 0.054 3.946 11 C -0.476 4.476 12 H 0.100 0.900 13 C -0.149 4.149 14 N -0.394 5.394 15 Si 0.733 3.267 16 H -0.187 1.187 17 H -0.202 1.202 18 H -0.203 1.203 19 C -0.311 4.311 20 C -0.031 4.031 21 C -0.113 4.113 22 C -0.206 4.206 23 C -0.206 4.206 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.065 0.935 27 H 0.138 0.862 28 H 0.134 0.866 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.082 0.918 32 H 0.141 0.859 33 H 0.124 0.876 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 7.392 4.808 5.913 10.617 hybrid contribution -0.414 -1.096 0.013 1.172 sum 6.978 3.712 5.925 9.878 Atomic orbital electron populations 1.20637 0.90084 1.01910 1.02901 1.19993 0.97142 0.91514 0.99885 1.20853 0.94046 0.96898 1.01050 1.20962 0.94155 0.97613 1.03561 1.20812 0.99197 0.91956 1.01291 1.21115 0.92723 0.98568 1.04124 1.17248 0.89688 0.84400 0.98436 1.46126 1.30300 1.09164 1.29495 1.79132 1.03919 1.15997 1.14443 1.20670 0.92862 0.90490 0.90559 1.18625 1.12887 1.01138 1.14990 0.89989 1.25823 0.97756 0.94800 0.96548 1.69941 1.35038 1.12333 1.22121 0.86261 0.80722 0.80446 0.79223 1.18689 1.20233 1.20255 1.22199 1.03562 0.99587 1.05791 1.19771 0.98241 0.90364 0.94729 1.20476 0.99152 0.96287 0.95434 1.23018 0.97673 0.96711 1.03149 1.23008 1.00961 1.03852 0.92793 0.90422 0.90580 0.93491 0.86250 0.86567 0.86347 0.86130 0.91794 0.85938 0.87556 0.88235 0.88952 0.88979 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.02 9.12 36.01 0.33 -1.69 16 2 C -0.08 -1.65 5.90 -104.41 -0.62 -2.26 16 3 C -0.11 -1.78 9.71 -39.61 -0.38 -2.16 16 4 C -0.14 -2.08 10.04 -39.53 -0.40 -2.48 16 5 C -0.11 -1.70 10.04 -39.61 -0.40 -2.10 16 6 C -0.14 -2.59 8.10 -39.37 -0.32 -2.91 16 7 C 0.20 4.20 5.98 -83.68 -0.50 3.70 16 8 N -0.38 -9.08 3.07 -6.95 -0.02 -9.10 16 9 N -0.31 -8.67 8.99 33.26 0.30 -8.37 16 10 C 0.21 5.82 6.92 -82.93 -0.57 5.25 16 11 C -0.44 -12.02 9.43 -37.82 -0.36 -12.37 16 12 H 0.08 2.12 7.84 -52.49 -0.41 1.71 16 13 C 0.07 1.88 5.49 -17.35 -0.10 1.78 16 14 N -0.77 -21.34 11.96 55.54 0.66 -20.67 16 15 Si 0.91 19.57 29.56 -169.99 -5.02 14.54 16 16 H -0.26 -5.52 7.11 56.52 0.40 -5.11 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 19 C -0.28 -6.74 9.95 -37.58 -0.37 -7.12 16 20 C 0.09 1.93 6.44 -81.92 -0.53 1.40 16 21 C -0.09 -1.61 5.38 -91.78 -0.49 -2.10 16 22 C -0.17 -2.38 10.04 -26.70 -0.27 -2.65 16 23 C -0.17 -2.42 10.04 -26.70 -0.27 -2.69 16 24 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 25 H 0.08 1.81 6.63 -51.93 -0.34 1.47 16 26 H 0.05 0.80 8.11 -51.93 -0.42 0.38 16 27 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.12 2.09 7.39 -52.48 -0.39 1.70 16 31 H 0.27 6.94 8.30 -40.82 -0.34 6.60 16 32 H 0.12 2.65 8.06 -52.48 -0.42 2.23 16 33 H 0.11 1.75 6.36 -51.93 -0.33 1.42 16 34 H 0.10 1.48 7.92 -51.93 -0.41 1.07 16 35 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 1.50 7.94 -51.93 -0.41 1.09 16 LS Contribution 314.62 15.07 4.74 4.74 Total: -1.00 -30.63 314.62 -9.40 -40.03 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -4.81 Total: 7.24 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -5.24 Total: -28.41 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.94 Total: -38.15 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.63 -9.40 -40.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041278714.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.056 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds