Wall clock time and date at job start Mon Mar 30 2020 07:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38332 * 119.95522 * 2 1 4 4 C 1.38292 * 120.15562 * 179.72404 * 3 2 1 5 5 C 1.38112 * 120.07243 * 0.54723 * 4 3 2 6 6 C 1.38935 * 119.92139 * 359.72745 * 5 4 3 7 7 N 1.39821 * 120.07649 * 179.97438 * 6 5 4 8 8 N 1.39935 * 125.42763 * 144.71643 * 7 6 5 9 9 C 1.33005 * 108.23377 * 179.82262 * 8 7 6 10 10 C 1.41268 * 126.49219 * 180.13251 * 9 8 7 11 11 H 1.08002 * 119.99970 * 174.73826 * 10 9 8 12 12 C 1.39880 * 120.00013 * 354.74718 * 10 9 8 13 13 N 1.30882 * 119.99449 * 6.03258 * 12 10 9 14 14 Si 1.86798 * 120.00166 * 186.03528 * 12 10 9 15 15 H 1.48502 * 109.46912 * 94.97699 * 14 12 10 16 16 H 1.48499 * 109.47238 * 214.97868 * 14 12 10 17 17 H 1.48500 * 109.46746 * 334.97834 * 14 12 10 18 18 C 1.46378 * 107.02271 * 0.42717 * 9 8 7 19 19 C 1.34656 * 107.14705 * 359.72759 * 18 9 8 20 20 C 1.50701 * 125.77269 * 180.02562 * 19 18 9 21 21 C 1.52998 * 117.49839 * 33.72537 * 20 19 18 22 22 C 1.53001 * 117.49976 * 325.06356 * 20 19 18 23 23 C 1.38058 * 119.96370 * 180.27021 * 2 1 3 24 24 H 1.09004 * 109.46856 * 269.72326 * 1 2 3 25 25 H 1.09000 * 109.46374 * 149.73010 * 1 2 3 26 26 H 1.08994 * 109.46997 * 29.72954 * 1 2 3 27 27 H 1.07997 * 119.92536 * 0.02562 * 3 2 1 28 28 H 1.08001 * 119.96344 * 180.27033 * 4 3 2 29 29 H 1.07997 * 120.03505 * 179.74721 * 5 4 3 30 30 H 0.97002 * 119.99334 * 180.02562 * 13 12 10 31 31 H 1.07999 * 126.42969 * 179.74578 * 18 9 8 32 32 H 1.08999 * 115.54587 * 179.39446 * 20 19 18 33 33 H 1.09000 * 117.50147 * 359.97438 * 21 20 19 34 34 H 1.08998 * 117.49925 * 145.02093 * 21 20 19 35 35 H 1.09003 * 117.49345 * 214.98138 * 22 20 19 36 36 H 1.09000 * 117.49823 * 359.97438 * 22 20 19 37 37 H 1.08000 * 120.03789 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1978 1.1985 0.0000 4 6 3.5807 1.2034 0.0058 5 6 4.2770 0.0106 0.0001 6 6 3.5864 -1.1949 -0.0056 7 7 4.2880 -2.4044 -0.0119 8 7 3.8902 -3.5763 0.6411 9 6 4.8034 -4.5143 0.4058 10 6 4.7820 -5.8451 0.8792 11 1 5.5367 -6.5461 0.5542 12 6 3.7834 -6.2551 1.7687 13 7 2.8024 -5.4430 2.0706 14 14 3.8500 -7.9616 2.5257 15 1 4.5093 -7.8882 3.8543 16 1 2.4700 -8.4861 2.6861 17 1 4.6236 -8.8668 1.6384 18 6 5.8383 -3.9045 -0.4307 19 6 5.4706 -2.6278 -0.6496 20 6 6.2376 -1.6173 -1.4632 21 6 7.0167 -2.1312 -2.6755 22 6 7.7653 -1.6858 -1.4168 23 6 2.1966 -1.1960 -0.0056 24 1 -0.3633 -0.0050 1.0277 25 1 -0.3632 -0.8876 -0.5180 26 1 -0.3633 0.8924 -0.5096 27 1 1.6559 2.1327 0.0004 28 1 4.1168 2.1409 0.0102 29 1 5.3569 0.0151 0.0005 30 1 2.1101 -5.7272 2.6877 31 1 6.7295 -4.3880 -0.8027 32 1 5.7801 -0.6310 -1.5400 33 1 6.9750 -3.2001 -2.8845 34 1 7.0722 -1.4827 -3.5499 35 1 8.3129 -0.7445 -1.4635 36 1 8.2157 -2.4615 -0.7974 37 1 1.6566 -2.1314 -0.0096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041278716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:49 Heat of formation + Delta-G solvation = 98.598751 kcal Electronic energy + Delta-G solvation = -19614.993414 eV Core-core repulsion = 16744.448306 eV Total energy + Delta-G solvation = -2870.545108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.63132 -39.76647 -37.81187 -35.63074 -34.18471 -32.90043 -30.66993 -29.71917 -28.13459 -27.35989 -24.44530 -23.44112 -23.23418 -22.26663 -21.48050 -19.93267 -18.43400 -18.10739 -17.19558 -16.60393 -16.29376 -15.74577 -15.47473 -15.19080 -14.76651 -14.52477 -14.46443 -14.10706 -13.95732 -13.30995 -13.11850 -13.02589 -12.86104 -12.67293 -12.47015 -12.38040 -12.16658 -12.02515 -11.79164 -11.76692 -11.37110 -11.22389 -10.48866 -10.27471 -9.69435 -9.26664 -8.74144 -8.45235 -6.47574 0.19527 0.40977 1.36039 1.38441 1.54554 1.54751 2.18642 2.24857 2.29098 2.81669 3.10340 3.48567 3.65351 3.84630 3.95263 4.00686 4.14975 4.20044 4.23007 4.42225 4.45238 4.55834 4.74756 4.76905 4.78952 4.86725 4.90854 4.97759 5.03595 5.13743 5.24611 5.27749 5.28152 5.45245 5.50274 5.55075 5.66512 5.77876 6.03767 6.33411 6.81075 6.89869 7.06299 7.83650 8.53463 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014535 B = 0.006830 C = 0.004840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.920464 B = 4098.721410 C = 5783.453649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.069 4.069 3 C -0.142 4.142 4 C -0.082 4.082 5 C -0.173 4.173 6 C 0.163 3.837 7 N -0.384 5.384 8 N -0.367 5.367 9 C 0.175 3.825 10 C -0.473 4.473 11 H 0.091 0.909 12 C 0.020 3.980 13 N -0.812 5.812 14 Si 0.995 3.005 15 H -0.265 1.265 16 H -0.272 1.272 17 H -0.251 1.251 18 C -0.316 4.316 19 C 0.101 3.899 20 C -0.131 4.131 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.158 4.158 24 H 0.076 0.924 25 H 0.054 0.946 26 H 0.098 0.902 27 H 0.163 0.837 28 H 0.167 0.833 29 H 0.135 0.865 30 H 0.276 0.724 31 H 0.140 0.860 32 H 0.128 0.872 33 H 0.085 0.915 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.087 0.913 37 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.278 13.000 -5.882 14.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.069 4.069 3 C -0.160 4.160 4 C -0.100 4.100 5 C -0.194 4.194 6 C 0.069 3.931 7 N -0.159 5.159 8 N -0.192 5.192 9 C 0.020 3.980 10 C -0.512 4.512 11 H 0.109 0.891 12 C -0.196 4.196 13 N -0.440 5.440 14 Si 0.816 3.184 15 H -0.190 1.190 16 H -0.197 1.197 17 H -0.174 1.174 18 C -0.346 4.346 19 C -0.018 4.018 20 C -0.150 4.150 21 C -0.190 4.190 22 C -0.182 4.182 23 C -0.179 4.179 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.185 0.815 29 H 0.152 0.848 30 H 0.086 0.914 31 H 0.158 0.842 32 H 0.146 0.854 33 H 0.104 0.896 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.106 0.894 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.992 13.388 -5.246 14.413 hybrid contribution 0.516 -1.673 0.229 1.766 sum 1.508 11.714 -5.017 12.833 Atomic orbital electron populations 1.20829 0.89103 1.03607 1.03041 1.20113 0.97584 0.91833 0.97407 1.21378 0.94340 0.97729 1.02546 1.21350 0.94470 0.97312 0.96882 1.21300 1.00639 0.90875 1.06553 1.17988 0.91676 0.83812 0.99660 1.46375 1.17462 1.09929 1.42160 1.78892 1.23562 0.90976 1.25816 1.21210 0.90120 0.94380 0.92267 1.19052 1.12565 0.93645 1.25920 0.89138 1.26944 0.93338 1.03496 0.95852 1.70112 1.09014 1.37813 1.27102 0.85003 0.78473 0.76189 0.78783 1.19024 1.19683 1.17398 1.22367 1.04136 0.94926 1.13128 1.20551 0.88380 0.95557 0.97293 1.20847 0.94356 0.97797 1.02026 1.23131 1.01627 1.02106 0.92170 1.23141 0.90479 1.04354 1.00259 1.20865 0.92655 0.98559 1.05813 0.90528 0.92644 0.88313 0.81983 0.81507 0.84767 0.91375 0.84242 0.85436 0.89622 0.85459 0.85096 0.89445 0.89340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.69 10.01 71.24 0.71 -1.98 16 2 C -0.07 -2.19 5.88 -19.88 -0.12 -2.31 16 3 C -0.14 -3.55 9.70 22.31 0.22 -3.34 16 4 C -0.08 -2.09 10.04 22.25 0.22 -1.87 16 5 C -0.17 -5.95 8.11 22.41 0.18 -5.77 16 6 C 0.16 7.34 6.32 38.21 0.24 7.58 16 7 N -0.38 -20.34 3.73 -175.90 -0.66 -21.00 16 8 N -0.37 -22.99 10.59 -48.70 -0.52 -23.50 16 9 C 0.18 10.73 6.92 41.83 0.29 11.02 16 10 C -0.47 -28.08 9.42 23.41 0.22 -27.86 16 11 H 0.09 4.98 7.85 -2.91 -0.02 4.96 16 12 C 0.02 1.11 5.49 85.23 0.47 1.58 16 13 N -0.81 -49.17 11.99 21.82 0.26 -48.91 16 14 Si 1.00 42.04 29.56 68.60 2.03 44.07 16 15 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 16 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 17 H -0.25 -9.95 7.11 99.48 0.71 -9.24 16 18 C -0.32 -16.36 9.95 23.57 0.23 -16.12 16 19 C 0.10 4.75 6.43 41.06 0.26 5.01 16 20 C -0.13 -4.36 5.07 -11.54 -0.06 -4.42 16 21 C -0.15 -4.05 10.04 30.62 0.31 -3.74 16 22 C -0.14 -3.73 10.04 30.62 0.31 -3.43 16 23 C -0.16 -6.87 9.39 22.41 0.21 -6.66 16 24 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 25 H 0.05 1.47 8.08 -2.39 -0.02 1.45 16 26 H 0.10 1.72 8.08 -2.39 -0.02 1.70 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 28 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 29 H 0.13 4.30 5.90 -2.91 -0.02 4.28 16 30 H 0.28 15.26 8.30 -92.71 -0.77 14.49 16 31 H 0.14 6.42 8.06 -2.91 -0.02 6.40 16 32 H 0.13 3.86 5.37 -2.39 -0.01 3.85 16 33 H 0.09 2.52 7.91 -2.39 -0.02 2.50 16 34 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 35 H 0.13 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.09 2.50 7.94 -2.39 -0.02 2.48 16 37 H 0.09 4.48 8.05 -2.91 -0.02 4.46 16 Total: -1.00 -78.57 316.10 5.89 -72.68 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 1.07 Total: 28.95 kcal Atomic # 6 Polarization: -55.99 SS G_CDS: 3.70 Total: -52.29 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -0.91 Total: -93.41 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.57 5.89 -72.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041278716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.280 kcal (2) G-P(sol) polarization free energy of solvation -78.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds