Wall clock time and date at job start Mon Mar 30 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47229 * 2 1 4 4 C 1.46905 * 111.00024 * 300.61467 * 3 2 1 5 5 C 1.50699 * 109.46904 * 288.96251 * 4 3 2 6 6 H 1.08004 * 119.99964 * 4.90794 * 5 4 3 7 7 C 1.37873 * 120.00223 * 184.91104 * 5 4 3 8 8 N 1.31519 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00258 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47173 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47341 * 119.99768 * 9 7 5 12 12 H 1.48503 * 109.47079 * 239.99574 * 9 7 5 13 13 C 1.46902 * 111.00251 * 64.56201 * 3 2 1 14 14 C 1.50708 * 109.46525 * 73.90406 * 13 3 2 15 15 C 1.38121 * 119.96913 * 256.85294 * 14 13 3 16 16 C 1.38879 * 119.93715 * 179.73280 * 15 14 13 17 17 N 1.39742 * 120.06636 * 180.27445 * 16 15 14 18 18 C 1.38917 * 119.87708 * 0.54325 * 16 15 14 19 19 C 1.38088 * 119.93398 * 359.73018 * 18 16 15 20 20 C 1.38358 * 119.96838 * 77.13318 * 14 13 3 21 21 Cl 1.73607 * 119.93710 * 0.02562 * 20 14 13 22 22 H 1.09002 * 109.47038 * 65.43354 * 1 2 3 23 23 H 1.09000 * 109.46795 * 185.42982 * 1 2 3 24 24 H 1.08994 * 109.47308 * 305.42644 * 1 2 3 25 25 H 1.09006 * 109.47435 * 239.99850 * 2 1 3 26 26 H 1.09007 * 109.47391 * 119.99916 * 2 1 3 27 27 H 1.08994 * 109.47042 * 48.95950 * 4 3 2 28 28 H 1.09000 * 109.47322 * 168.96293 * 4 3 2 29 29 H 0.97000 * 120.00185 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47515 * 193.90442 * 13 3 2 31 31 H 1.08998 * 109.47070 * 313.90909 * 13 3 2 32 32 H 1.08001 * 120.03549 * 0.02562 * 15 14 13 33 33 H 0.96993 * 120.00311 * 180.26619 * 17 16 15 34 34 H 0.97009 * 119.99430 * 0.27377 * 17 16 15 35 35 H 1.07995 * 120.03466 * 179.70674 * 18 16 15 36 36 H 1.08004 * 119.96664 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5367 2.1141 -1.1803 5 6 2.2387 1.5997 -2.4106 6 1 2.9110 0.7577 -2.3363 7 6 2.0228 2.2038 -3.6309 8 7 1.2037 3.2289 -3.7214 9 14 2.8924 1.5657 -5.1560 10 1 3.7528 0.4124 -4.7891 11 1 1.8838 1.1328 -6.1564 12 1 3.7323 2.6449 -5.7350 13 6 1.6398 2.0777 1.2385 14 6 2.4925 1.5770 2.3758 15 6 1.9679 0.6853 3.2908 16 6 2.7560 0.2200 4.3354 17 7 2.2298 -0.6867 5.2594 18 6 4.0668 0.6620 4.4633 19 6 4.5842 1.5580 3.5488 20 6 3.7983 2.0156 2.5057 21 17 4.4519 3.1427 1.3583 22 1 -0.3633 0.4273 -0.9347 23 1 -0.3633 -1.0231 0.0972 24 1 -0.3633 0.5957 0.8373 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.4623 1.9640 -1.2856 28 1 1.7450 3.1774 -1.0610 29 1 1.0515 3.6537 -4.5800 30 1 1.7908 3.1502 1.1159 31 1 0.5903 1.8812 1.4574 32 1 0.9473 0.3464 3.1914 33 1 2.7798 -1.0080 5.9908 34 1 1.3144 -0.9948 5.1692 35 1 4.6804 0.3055 5.2774 36 1 5.6031 1.9023 3.6481 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042450329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:57 Heat of formation + Delta-G solvation = 20.062284 kcal Electronic energy + Delta-G solvation = -18374.478364 eV Core-core repulsion = 15498.094809 eV Total energy + Delta-G solvation = -2876.383555 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.48055 -37.08512 -35.92749 -34.12858 -32.59973 -31.43353 -29.41934 -28.29406 -26.95844 -24.70523 -23.06347 -22.30850 -21.18146 -19.20011 -17.00228 -16.69946 -16.11861 -15.89286 -15.10426 -14.96312 -14.26714 -13.91427 -13.85817 -13.28180 -13.20254 -12.73660 -12.33062 -11.89363 -11.73723 -11.69998 -11.36965 -11.13648 -10.95739 -10.86345 -10.62008 -10.47340 -10.13010 -9.98668 -9.84563 -9.64222 -9.13599 -8.66617 -8.33872 -7.35270 -7.07766 -5.94046 -3.93460 1.50649 1.63879 2.84308 3.36239 3.43739 3.49158 3.80593 3.91144 4.50979 4.91610 5.01893 5.21391 5.37449 5.42951 5.59346 5.67871 5.81277 5.91426 6.01939 6.04284 6.20914 6.22306 6.31505 6.38950 6.49537 6.70590 6.76295 6.85749 6.95960 7.39173 7.43773 7.47715 7.67548 7.90545 8.19966 8.32891 8.64610 9.13949 9.69679 11.16768 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.005618 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.343672 B = 4983.195267 C = 5629.816531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.060 3.940 3 N -0.518 5.518 4 C 0.191 3.809 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.054 3.946 8 N -0.901 5.901 9 Si 0.894 3.106 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.285 1.285 13 C 0.081 3.919 14 C -0.005 4.005 15 C -0.183 4.183 16 C 0.212 3.788 17 N -0.881 5.881 18 C -0.197 4.197 19 C -0.069 4.069 20 C -0.068 4.068 21 Cl -0.060 7.060 22 H 0.068 0.932 23 H 0.044 0.956 24 H 0.045 0.955 25 H 0.077 0.923 26 H 0.052 0.948 27 H -0.004 1.004 28 H 0.031 0.969 29 H 0.259 0.741 30 H 0.082 0.918 31 H 0.039 0.961 32 H 0.122 0.878 33 H 0.395 0.605 34 H 0.397 0.603 35 H 0.121 0.879 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.993 -5.628 17.525 18.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.068 4.068 3 N -0.241 5.241 4 C 0.066 3.934 5 C -0.534 4.534 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.541 5.541 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.211 1.211 13 C -0.047 4.047 14 C -0.007 4.007 15 C -0.206 4.206 16 C 0.108 3.892 17 N -0.420 5.420 18 C -0.220 4.220 19 C -0.088 4.088 20 C -0.097 4.097 21 Cl -0.031 7.031 22 H 0.087 0.913 23 H 0.063 0.937 24 H 0.064 0.936 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.014 0.986 28 H 0.049 0.951 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.057 0.943 32 H 0.140 0.860 33 H 0.223 0.777 34 H 0.225 0.775 35 H 0.139 0.861 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 2.515 -5.370 17.208 18.201 hybrid contribution -0.564 -0.450 -0.691 0.999 sum 1.951 -5.820 16.517 17.621 Atomic orbital electron populations 1.22398 0.99639 1.00467 1.02247 1.21980 0.91825 0.91761 1.01269 1.62307 1.59175 1.01513 1.01125 1.19815 0.93820 0.93805 0.85976 1.21174 1.25605 1.15192 0.91435 0.91989 1.24950 0.95586 0.95135 0.98970 1.69967 1.36795 1.22445 1.24914 0.86504 0.79423 0.78846 0.83020 1.19713 1.21288 1.21145 1.21139 0.94921 0.99302 0.89361 1.19629 0.92811 0.93663 0.94592 1.20403 1.00267 1.03154 0.96814 1.17744 0.92373 0.89623 0.89472 1.42421 1.16930 1.51030 1.31629 1.20377 0.94605 1.04139 1.02860 1.20736 0.99190 0.96034 0.92861 1.20525 0.94290 1.00198 0.94675 1.98378 1.85604 1.59550 1.59533 0.91319 0.93654 0.93606 0.90419 0.92972 0.98612 0.95086 0.93165 0.89973 0.94314 0.85996 0.77681 0.77543 0.86091 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.33 9.24 37.16 0.34 -2.98 16 2 C 0.06 1.17 5.79 -3.83 -0.02 1.15 16 3 N -0.52 -11.10 4.59 -237.51 -1.09 -12.19 16 4 C 0.19 4.91 4.55 -4.97 -0.02 4.88 16 5 C -0.50 -13.95 8.67 -34.44 -0.30 -14.25 16 6 H 0.06 1.76 7.27 -52.48 -0.38 1.38 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 9 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 C 0.08 1.49 4.36 -4.97 -0.02 1.47 16 14 C 0.00 -0.08 4.79 -104.62 -0.50 -0.58 16 15 C -0.18 -2.53 8.82 -39.39 -0.35 -2.88 16 16 C 0.21 2.53 6.76 -83.76 -0.57 1.97 16 17 N -0.88 -7.33 9.09 32.42 0.29 -7.04 16 18 C -0.20 -2.34 9.90 -39.38 -0.39 -2.73 16 19 C -0.07 -0.93 9.82 -39.58 -0.39 -1.32 16 20 C -0.07 -1.10 6.31 -39.48 -0.25 -1.35 16 21 Cl -0.06 -1.06 27.57 -51.86 -1.43 -2.49 16 22 H 0.07 1.39 6.46 -51.93 -0.34 1.06 16 23 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 24 H 0.05 0.75 6.04 -51.93 -0.31 0.44 16 25 H 0.08 1.64 7.13 -51.93 -0.37 1.27 16 26 H 0.05 0.93 6.89 -51.93 -0.36 0.57 16 27 H 0.00 -0.10 5.88 -51.93 -0.31 -0.41 16 28 H 0.03 0.87 7.73 -51.93 -0.40 0.47 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.08 1.60 7.04 -51.93 -0.37 1.24 16 31 H 0.04 0.68 5.65 -51.93 -0.29 0.38 16 32 H 0.12 1.54 8.01 -52.49 -0.42 1.12 16 33 H 0.40 2.46 8.84 -40.82 -0.36 2.10 16 34 H 0.40 2.75 8.84 -40.82 -0.36 2.39 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 308.20 15.07 4.64 4.64 Total: -1.00 -30.73 308.20 -9.10 -39.83 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -4.67 Total: 1.61 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -2.56 Total: -15.18 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.06 Total: -45.43 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.43 Total: -2.49 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.73 -9.10 -39.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.892 kcal (2) G-P(sol) polarization free energy of solvation -30.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds