Wall clock time and date at job start Mon Mar 30 2020 06:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47229 * 2 1 4 4 C 1.46905 * 111.00024 * 300.61467 * 3 2 1 5 5 C 1.50699 * 109.46904 * 288.96251 * 4 3 2 6 6 H 1.08004 * 119.99964 * 4.90794 * 5 4 3 7 7 C 1.37873 * 120.00223 * 184.91104 * 5 4 3 8 8 N 1.31519 * 119.99857 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00258 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47173 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47341 * 119.99768 * 9 7 5 12 12 H 1.48503 * 109.47079 * 239.99574 * 9 7 5 13 13 C 1.46902 * 111.00251 * 64.56201 * 3 2 1 14 14 C 1.50708 * 109.46525 * 73.90406 * 13 3 2 15 15 C 1.38121 * 119.96913 * 256.85294 * 14 13 3 16 16 C 1.38879 * 119.93715 * 179.73280 * 15 14 13 17 17 N 1.39742 * 120.06636 * 180.27445 * 16 15 14 18 18 C 1.38917 * 119.87708 * 0.54325 * 16 15 14 19 19 C 1.38088 * 119.93398 * 359.73018 * 18 16 15 20 20 C 1.38358 * 119.96838 * 77.13318 * 14 13 3 21 21 Cl 1.73607 * 119.93710 * 0.02562 * 20 14 13 22 22 H 1.09002 * 109.47038 * 65.43354 * 1 2 3 23 23 H 1.09000 * 109.46795 * 185.42982 * 1 2 3 24 24 H 1.08994 * 109.47308 * 305.42644 * 1 2 3 25 25 H 1.09006 * 109.47435 * 239.99850 * 2 1 3 26 26 H 1.09007 * 109.47391 * 119.99916 * 2 1 3 27 27 H 1.08994 * 109.47042 * 48.95950 * 4 3 2 28 28 H 1.09000 * 109.47322 * 168.96293 * 4 3 2 29 29 H 0.97000 * 120.00185 * 180.02562 * 8 7 5 30 30 H 1.08995 * 109.47515 * 193.90442 * 13 3 2 31 31 H 1.08998 * 109.47070 * 313.90909 * 13 3 2 32 32 H 1.08001 * 120.03549 * 0.02562 * 15 14 13 33 33 H 0.96993 * 120.00311 * 180.26619 * 17 16 15 34 34 H 0.97009 * 119.99430 * 0.27377 * 17 16 15 35 35 H 1.07995 * 120.03466 * 179.70674 * 18 16 15 36 36 H 1.08004 * 119.96664 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5367 2.1141 -1.1803 5 6 2.2387 1.5997 -2.4106 6 1 2.9110 0.7577 -2.3363 7 6 2.0228 2.2038 -3.6309 8 7 1.2037 3.2289 -3.7214 9 14 2.8924 1.5657 -5.1560 10 1 3.7528 0.4124 -4.7891 11 1 1.8838 1.1328 -6.1564 12 1 3.7323 2.6449 -5.7350 13 6 1.6398 2.0777 1.2385 14 6 2.4925 1.5770 2.3758 15 6 1.9679 0.6853 3.2908 16 6 2.7560 0.2200 4.3354 17 7 2.2298 -0.6867 5.2594 18 6 4.0668 0.6620 4.4633 19 6 4.5842 1.5580 3.5488 20 6 3.7983 2.0156 2.5057 21 17 4.4519 3.1427 1.3583 22 1 -0.3633 0.4273 -0.9347 23 1 -0.3633 -1.0231 0.0972 24 1 -0.3633 0.5957 0.8373 25 1 1.8934 -0.5139 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 0.4623 1.9640 -1.2856 28 1 1.7450 3.1774 -1.0610 29 1 1.0515 3.6537 -4.5800 30 1 1.7908 3.1502 1.1159 31 1 0.5903 1.8812 1.4574 32 1 0.9473 0.3464 3.1914 33 1 2.7798 -1.0080 5.9908 34 1 1.3144 -0.9948 5.1692 35 1 4.6804 0.3055 5.2774 36 1 5.6031 1.9023 3.6481 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042450329.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:57 Heat of formation + Delta-G solvation = -0.395651 kcal Electronic energy + Delta-G solvation = -18375.365486 eV Core-core repulsion = 15498.094809 eV Total energy + Delta-G solvation = -2877.270677 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60304 -38.62867 -37.16442 -35.20264 -34.62349 -32.67857 -31.01196 -29.48151 -28.61321 -26.24937 -24.92937 -23.37734 -22.48037 -20.76240 -18.35234 -17.90611 -17.63305 -16.98789 -16.81521 -16.52253 -15.97826 -15.20460 -15.05870 -14.68197 -14.47708 -14.17943 -13.92262 -13.42952 -13.11518 -13.01948 -12.89097 -12.74666 -12.61542 -12.48734 -12.37061 -12.17702 -11.83409 -11.49087 -11.37358 -11.15731 -10.90279 -10.54859 -9.76968 -8.80723 -8.29964 -8.13709 -6.21602 0.43947 0.56656 1.40394 1.41885 1.54883 1.64246 2.43440 2.82522 3.04325 3.18136 3.56705 3.88347 3.94907 4.26384 4.34095 4.43685 4.50639 4.55861 4.68351 4.74926 4.81222 5.01043 5.02558 5.09944 5.25684 5.32611 5.34275 5.43010 5.52606 5.63490 5.73912 5.83429 6.15124 6.50529 6.61139 6.72814 6.94086 7.06988 7.46589 8.96681 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.005618 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.343672 B = 4983.195267 C = 5629.816531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 N -0.526 5.526 4 C 0.210 3.790 5 C -0.508 4.508 6 H 0.056 0.944 7 C 0.002 3.998 8 N -0.935 5.935 9 Si 0.962 3.038 10 H -0.266 1.266 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.087 3.913 14 C -0.023 4.023 15 C -0.189 4.189 16 C 0.222 3.778 17 N -0.863 5.863 18 C -0.190 4.190 19 C -0.069 4.069 20 C -0.095 4.095 21 Cl -0.090 7.090 22 H 0.034 0.966 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.075 0.925 27 H -0.022 1.022 28 H -0.003 1.003 29 H 0.262 0.738 30 H 0.060 0.940 31 H 0.048 0.952 32 H 0.134 0.866 33 H 0.410 0.590 34 H 0.407 0.593 35 H 0.155 0.845 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -7.898 19.548 21.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.065 4.065 3 N -0.249 5.249 4 C 0.084 3.916 5 C -0.547 4.547 6 H 0.074 0.926 7 C -0.195 4.195 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.190 1.190 11 H -0.204 1.204 12 H -0.208 1.208 13 C -0.040 4.040 14 C -0.025 4.025 15 C -0.213 4.213 16 C 0.115 3.885 17 N -0.403 5.403 18 C -0.213 4.213 19 C -0.088 4.088 20 C -0.124 4.124 21 Cl -0.062 7.062 22 H 0.053 0.947 23 H 0.093 0.907 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.094 0.906 27 H -0.004 1.004 28 H 0.015 0.985 29 H 0.070 0.930 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.240 0.760 34 H 0.236 0.764 35 H 0.172 0.828 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.963 -7.680 19.282 20.965 hybrid contribution -0.725 0.182 -1.133 1.357 sum 2.238 -7.498 18.149 19.764 Atomic orbital electron populations 1.22267 0.98174 1.02279 1.00916 1.21960 0.93019 0.90323 1.01214 1.62163 1.59562 1.02324 1.00870 1.19396 0.92499 0.92226 0.87517 1.21443 1.25516 1.15028 0.92680 0.92555 1.25802 0.96257 0.95285 1.02177 1.70089 1.38132 1.23635 1.25821 0.85445 0.78401 0.78368 0.79073 1.19002 1.20365 1.20765 1.21032 0.96070 0.97988 0.88949 1.19428 0.92763 0.95502 0.94782 1.20474 1.01082 1.02775 0.96933 1.17796 0.92211 0.89313 0.89143 1.42404 1.17629 1.49390 1.30838 1.20742 0.94866 1.02824 1.02872 1.20959 0.99704 0.95974 0.92167 1.20707 0.94919 1.01175 0.95553 1.98360 1.85981 1.60876 1.60952 0.94693 0.90656 0.92338 0.92670 0.90625 1.00408 0.98531 0.92953 0.92151 0.93380 0.84781 0.75999 0.76393 0.82753 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.14 9.24 71.98 0.67 -5.48 16 2 C 0.06 2.42 5.79 86.30 0.50 2.92 16 3 N -0.53 -23.16 4.59 -905.34 -4.16 -27.32 16 4 C 0.21 11.33 4.55 85.56 0.39 11.72 16 5 C -0.51 -29.53 8.67 25.60 0.22 -29.31 16 6 H 0.06 3.27 7.27 -2.91 -0.02 3.25 16 7 C 0.00 0.12 5.46 84.65 0.46 0.58 16 8 N -0.94 -57.53 13.29 21.45 0.28 -57.24 16 9 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 C 0.09 3.30 4.36 85.56 0.37 3.67 16 14 C -0.02 -0.73 4.79 -19.86 -0.10 -0.82 16 15 C -0.19 -4.76 8.82 22.40 0.20 -4.56 16 16 C 0.22 4.47 6.76 38.20 0.26 4.73 16 17 N -0.86 -10.41 9.09 -51.34 -0.47 -10.88 16 18 C -0.19 -3.80 9.90 22.40 0.22 -3.58 16 19 C -0.07 -1.73 9.82 22.27 0.22 -1.51 16 20 C -0.09 -3.04 6.31 22.34 0.14 -2.90 16 21 Cl -0.09 -3.34 27.57 -2.72 -0.07 -3.42 16 22 H 0.03 1.43 6.46 -2.39 -0.02 1.42 16 23 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 24 H 0.06 1.85 6.04 -2.39 -0.01 1.84 16 25 H 0.05 2.35 7.13 -2.38 -0.02 2.34 16 26 H 0.08 2.56 6.89 -2.38 -0.02 2.54 16 27 H -0.02 -1.22 5.88 -2.39 -0.01 -1.24 16 28 H 0.00 -0.21 7.73 -2.39 -0.02 -0.23 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.06 2.50 7.04 -2.39 -0.02 2.49 16 31 H 0.05 1.69 5.65 -2.39 -0.01 1.67 16 32 H 0.13 2.97 8.01 -2.91 -0.02 2.95 16 33 H 0.41 3.04 8.84 -92.71 -0.82 2.22 16 34 H 0.41 3.81 8.84 -92.70 -0.82 2.99 16 35 H 0.15 2.06 8.06 -2.91 -0.02 2.03 16 36 H 0.14 3.04 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -68.54 308.20 0.64 -67.90 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -0.53 Total: 7.61 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 3.55 Total: -24.52 kcal Atomic # 7 Polarization: -91.10 SS G_CDS: -4.34 Total: -95.44 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 17 Polarization: -3.34 SS G_CDS: -0.07 Total: -3.42 kcal Total: -68.54 0.64 -67.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042450329.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.506 kcal (2) G-P(sol) polarization free energy of solvation -68.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds