Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 N 1.46908 * 109.46754 * 240.00122 * 2 1 3 5 5 C 1.46901 * 111.00144 * 298.07816 * 4 2 1 6 6 C 1.50707 * 109.46768 * 291.41642 * 5 4 2 7 7 H 1.08001 * 120.00049 * 4.72830 * 6 5 4 8 8 C 1.37876 * 119.99671 * 184.72981 * 6 5 4 9 9 N 1.31516 * 120.00003 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00147 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46659 * 90.00216 * 10 8 6 12 12 H 1.48500 * 109.47463 * 210.00106 * 10 8 6 13 13 H 1.48502 * 109.47172 * 330.00605 * 10 8 6 14 14 C 1.40089 * 110.99500 * 62.03137 * 4 2 1 15 15 C 1.38645 * 120.08634 * 292.89747 * 14 4 2 16 16 C 1.38266 * 120.01603 * 179.97438 * 15 14 4 17 17 C 1.38360 * 120.17803 * 0.02973 * 16 15 14 18 18 Cl 1.73597 * 119.91589 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.16393 * 359.97438 * 17 16 15 20 20 C 1.38668 * 119.98744 * 359.70527 * 19 17 16 21 21 N 1.40018 * 120.08853 * 180.29608 * 20 19 17 22 22 H 1.08993 * 109.47662 * 51.33416 * 1 2 3 23 23 H 1.09003 * 109.46989 * 291.33335 * 1 2 3 24 24 H 1.09008 * 109.47254 * 171.33873 * 1 2 3 25 25 H 1.09001 * 109.47079 * 120.00761 * 2 1 3 26 26 H 1.08996 * 109.46760 * 63.25909 * 3 2 1 27 27 H 1.08999 * 109.47040 * 183.25315 * 3 2 1 28 28 H 1.08989 * 109.47357 * 303.25373 * 3 2 1 29 29 H 1.09001 * 109.47169 * 51.41317 * 5 4 2 30 30 H 1.08992 * 109.46893 * 171.41852 * 5 4 2 31 31 H 0.97002 * 119.99950 * 180.02562 * 9 8 6 32 32 H 1.08006 * 119.98924 * 0.02562 * 15 14 4 33 33 H 1.08003 * 119.91317 * 180.02562 * 16 15 14 34 34 H 1.07999 * 120.00500 * 180.02562 * 19 17 16 35 35 H 0.96996 * 119.99902 * 180.27873 * 21 20 19 36 36 H 0.97003 * 119.99605 * 0.27605 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 1.5864 -2.0962 -1.2107 6 6 2.2948 -2.8492 -0.1142 7 1 2.9378 -2.3217 0.5748 8 6 2.1219 -4.2115 0.0094 9 7 2.7397 -4.8685 0.9666 10 14 1.0092 -5.1237 -1.1819 11 1 1.8039 -5.5810 -2.3501 12 1 0.4110 -6.2991 -0.4994 13 1 -0.0718 -4.2161 -1.6434 14 6 1.6085 -0.0309 -2.3640 15 6 0.2652 0.0061 -2.7049 16 6 -0.1390 0.6599 -3.8542 17 6 0.7942 1.2781 -4.6674 18 17 0.2794 2.0966 -6.1092 19 6 2.1367 1.2457 -4.3343 20 6 2.5489 0.5976 -3.1797 21 7 3.9063 0.5689 -2.8373 22 1 -0.3634 0.6420 -0.8023 23 1 -0.3633 0.3739 0.9573 24 1 -0.3634 -1.0160 -0.1548 25 1 1.8933 -0.5140 0.8899 26 1 1.7251 1.9391 0.9177 27 1 3.1284 1.4430 -0.0583 28 1 1.6298 1.9729 -0.8593 29 1 0.5097 -2.1455 -1.0484 30 1 1.8295 -2.5437 -2.1744 31 1 2.6183 -5.8270 1.0534 32 1 -0.4659 -0.4753 -2.0721 33 1 -1.1859 0.6880 -4.1180 34 1 2.8629 1.7295 -4.9706 35 1 4.1936 0.1117 -2.0315 36 1 4.5592 1.0061 -3.4060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042528791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = 32.554957 kcal Electronic energy + Delta-G solvation = -18899.400995 eV Core-core repulsion = 16023.559164 eV Total energy + Delta-G solvation = -2875.841832 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.05819 -37.20748 -36.08946 -34.04701 -32.75831 -31.30615 -29.63244 -28.53344 -27.00501 -26.17941 -22.50188 -21.88852 -21.58092 -19.32331 -17.03562 -16.87098 -16.48464 -15.65793 -15.35032 -14.49784 -14.37755 -13.92973 -13.68666 -13.53492 -13.21113 -13.06351 -12.49953 -12.08935 -11.79012 -11.72827 -11.63196 -11.41831 -11.17554 -10.87495 -10.74253 -10.59111 -10.46855 -10.21703 -9.95898 -9.92649 -9.32521 -8.61481 -8.35425 -7.61924 -7.16448 -6.10309 -4.07704 1.45603 1.79297 2.29676 3.25812 3.33613 3.35901 3.97247 4.23412 4.37896 4.56374 5.12395 5.22252 5.35745 5.46410 5.59563 5.67057 5.70317 5.96362 5.98205 6.00459 6.07277 6.21772 6.25149 6.40600 6.50173 6.56574 6.68730 6.73296 6.85921 6.94509 7.06109 7.54684 7.70511 7.83729 8.14626 8.18844 8.61769 8.96907 9.51353 11.02475 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.006152 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.260889 B = 4550.255328 C = 4982.028504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.088 3.912 3 C -0.141 4.141 4 N -0.486 5.486 5 C 0.165 3.835 6 C -0.508 4.508 7 H 0.081 0.919 8 C 0.071 3.929 9 N -0.898 5.898 10 Si 0.871 3.129 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.267 1.267 14 C 0.040 3.960 15 C -0.101 4.101 16 C -0.169 4.169 17 C 0.004 3.996 18 Cl -0.089 7.089 19 C -0.200 4.200 20 C 0.249 3.751 21 N -0.861 5.861 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.098 0.902 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.047 0.953 29 H 0.000 1.000 30 H 0.024 0.976 31 H 0.264 0.736 32 H 0.137 0.863 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.414 0.586 36 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.995 13.249 -8.393 15.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.018 4.018 3 C -0.198 4.198 4 N -0.207 5.207 5 C 0.040 3.960 6 C -0.547 4.547 7 H 0.099 0.901 8 C -0.131 4.131 9 N -0.537 5.537 10 Si 0.698 3.302 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.192 1.192 14 C -0.058 4.058 15 C -0.122 4.122 16 C -0.191 4.191 17 C -0.023 4.023 18 Cl -0.061 7.061 19 C -0.224 4.224 20 C 0.141 3.859 21 N -0.399 5.399 22 H 0.078 0.922 23 H 0.071 0.929 24 H 0.086 0.914 25 H 0.116 0.884 26 H 0.070 0.930 27 H 0.076 0.924 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.154 0.846 33 H 0.140 0.860 34 H 0.144 0.856 35 H 0.246 0.754 36 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -2.494 13.112 -8.383 15.761 hybrid contribution -1.153 -0.660 -0.732 1.517 sum -3.647 12.452 -9.116 15.857 Atomic orbital electron populations 1.22833 0.98678 1.02416 1.01470 1.21602 0.92192 0.93791 0.94260 1.21841 1.01363 0.95956 1.00674 1.59849 1.59178 1.03320 0.98319 1.20287 0.94594 0.83176 0.97905 1.20970 1.28279 0.92285 1.13136 0.90102 1.24853 0.95496 0.97421 0.95294 1.69883 1.43041 1.08552 1.32257 0.86925 0.81696 0.79882 0.81665 1.20172 1.21194 1.19219 1.18621 0.90507 1.01307 0.95409 1.21906 0.96584 0.97866 0.95844 1.20625 0.98824 1.03417 0.96236 1.20462 0.93680 0.98951 0.89189 1.98330 1.91218 1.78198 1.38309 1.20192 0.94407 1.08663 0.99160 1.17438 0.85192 0.92087 0.91180 1.42502 1.03594 1.62916 1.30918 0.92228 0.92889 0.91416 0.88404 0.92978 0.92389 0.93373 0.98297 0.95803 0.92627 0.84568 0.86022 0.85616 0.75425 0.78208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.18 7.48 37.16 0.28 -2.90 16 2 C 0.09 1.56 2.83 -67.71 -0.19 1.37 16 3 C -0.14 -2.08 8.93 37.16 0.33 -1.75 16 4 N -0.49 -9.31 3.68 -164.70 -0.61 -9.92 16 5 C 0.17 3.79 3.15 -4.97 -0.02 3.77 16 6 C -0.51 -13.66 9.16 -34.44 -0.32 -13.98 16 7 H 0.08 2.35 7.36 -52.49 -0.39 1.96 16 8 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 9 N -0.90 -26.73 13.96 55.43 0.77 -25.96 16 10 Si 0.87 21.12 27.38 -169.99 -4.65 16.47 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.27 -6.25 6.68 56.52 0.38 -5.87 16 14 C 0.04 0.70 3.25 -83.48 -0.27 0.43 16 15 C -0.10 -1.65 6.99 -39.42 -0.28 -1.93 16 16 C -0.17 -2.49 9.82 -39.53 -0.39 -2.88 16 17 C 0.00 0.06 6.32 -39.49 -0.25 -0.19 16 18 Cl -0.09 -1.12 28.95 -51.86 -1.50 -2.62 16 19 C -0.20 -2.81 9.67 -39.38 -0.38 -3.19 16 20 C 0.25 3.84 6.70 -83.50 -0.56 3.28 16 21 N -0.86 -11.50 9.09 32.54 0.30 -11.20 16 22 H 0.06 0.90 5.38 -51.93 -0.28 0.62 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.07 1.22 5.50 -51.92 -0.29 0.93 16 25 H 0.10 1.95 6.89 -51.93 -0.36 1.60 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.71 7.24 -51.93 -0.38 0.34 16 29 H 0.00 -0.01 4.63 -51.93 -0.24 -0.25 16 30 H 0.02 0.58 7.19 -51.93 -0.37 0.20 16 31 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.14 2.23 4.96 -52.48 -0.26 1.97 16 33 H 0.12 1.58 8.06 -52.48 -0.42 1.16 16 34 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 35 H 0.41 6.09 8.11 -40.82 -0.33 5.76 16 36 H 0.39 4.03 8.85 -40.82 -0.36 3.67 16 LS Contribution 298.68 15.07 4.50 4.50 Total: -1.00 -28.45 298.68 -7.85 -36.30 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -4.52 Total: 8.50 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -2.13 Total: -16.07 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.46 Total: -47.08 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.65 Total: 16.47 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -1.50 Total: -2.62 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.45 -7.85 -36.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.857 kcal (2) G-P(sol) polarization free energy of solvation -28.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds