Wall clock time and date at job start Mon Mar 30 2020 06:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47089 * 2 1 4 4 N 1.46908 * 109.46754 * 240.00122 * 2 1 3 5 5 C 1.46901 * 111.00144 * 298.07816 * 4 2 1 6 6 C 1.50707 * 109.46768 * 291.41642 * 5 4 2 7 7 H 1.08001 * 120.00049 * 4.72830 * 6 5 4 8 8 C 1.37876 * 119.99671 * 184.72981 * 6 5 4 9 9 N 1.31516 * 120.00003 * 180.02562 * 8 6 5 10 10 Si 1.86803 * 120.00147 * 359.97438 * 8 6 5 11 11 H 1.48505 * 109.46659 * 90.00216 * 10 8 6 12 12 H 1.48500 * 109.47463 * 210.00106 * 10 8 6 13 13 H 1.48502 * 109.47172 * 330.00605 * 10 8 6 14 14 C 1.40089 * 110.99500 * 62.03137 * 4 2 1 15 15 C 1.38645 * 120.08634 * 292.89747 * 14 4 2 16 16 C 1.38266 * 120.01603 * 179.97438 * 15 14 4 17 17 C 1.38360 * 120.17803 * 0.02973 * 16 15 14 18 18 Cl 1.73597 * 119.91589 * 179.97438 * 17 16 15 19 19 C 1.38359 * 120.16393 * 359.97438 * 17 16 15 20 20 C 1.38668 * 119.98744 * 359.70527 * 19 17 16 21 21 N 1.40018 * 120.08853 * 180.29608 * 20 19 17 22 22 H 1.08993 * 109.47662 * 51.33416 * 1 2 3 23 23 H 1.09003 * 109.46989 * 291.33335 * 1 2 3 24 24 H 1.09008 * 109.47254 * 171.33873 * 1 2 3 25 25 H 1.09001 * 109.47079 * 120.00761 * 2 1 3 26 26 H 1.08996 * 109.46760 * 63.25909 * 3 2 1 27 27 H 1.08999 * 109.47040 * 183.25315 * 3 2 1 28 28 H 1.08989 * 109.47357 * 303.25373 * 3 2 1 29 29 H 1.09001 * 109.47169 * 51.41317 * 5 4 2 30 30 H 1.08992 * 109.46893 * 171.41852 * 5 4 2 31 31 H 0.97002 * 119.99950 * 180.02562 * 9 8 6 32 32 H 1.08006 * 119.98924 * 0.02562 * 15 14 4 33 33 H 1.08003 * 119.91317 * 180.02562 * 16 15 14 34 34 H 1.07999 * 120.00500 * 180.02562 * 19 17 16 35 35 H 0.96996 * 119.99902 * 180.27873 * 21 20 19 36 36 H 0.97003 * 119.99605 * 0.27605 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 1.5864 -2.0962 -1.2107 6 6 2.2948 -2.8492 -0.1142 7 1 2.9378 -2.3217 0.5748 8 6 2.1219 -4.2115 0.0094 9 7 2.7397 -4.8685 0.9666 10 14 1.0092 -5.1237 -1.1819 11 1 1.8039 -5.5810 -2.3501 12 1 0.4110 -6.2991 -0.4994 13 1 -0.0718 -4.2161 -1.6434 14 6 1.6085 -0.0309 -2.3640 15 6 0.2652 0.0061 -2.7049 16 6 -0.1390 0.6599 -3.8542 17 6 0.7942 1.2781 -4.6674 18 17 0.2794 2.0966 -6.1092 19 6 2.1367 1.2457 -4.3343 20 6 2.5489 0.5976 -3.1797 21 7 3.9063 0.5689 -2.8373 22 1 -0.3634 0.6420 -0.8023 23 1 -0.3633 0.3739 0.9573 24 1 -0.3634 -1.0160 -0.1548 25 1 1.8933 -0.5140 0.8899 26 1 1.7251 1.9391 0.9177 27 1 3.1284 1.4430 -0.0583 28 1 1.6298 1.9729 -0.8593 29 1 0.5097 -2.1455 -1.0484 30 1 1.8295 -2.5437 -2.1744 31 1 2.6183 -5.8270 1.0534 32 1 -0.4659 -0.4753 -2.0721 33 1 -1.1859 0.6880 -4.1180 34 1 2.8629 1.7295 -4.9706 35 1 4.1936 0.1117 -2.0315 36 1 4.5592 1.0061 -3.4060 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:03 Heat of formation + Delta-G solvation = 14.804107 kcal Electronic energy + Delta-G solvation = -18900.170730 eV Core-core repulsion = 16023.559164 eV Total energy + Delta-G solvation = -2876.611566 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.34551 -38.47088 -37.21528 -35.17175 -34.80566 -32.76690 -31.04033 -29.90639 -28.27424 -27.75407 -24.04152 -23.22966 -22.98207 -20.72447 -18.83075 -18.15408 -17.74301 -16.99305 -16.93330 -16.10602 -15.72367 -15.29049 -15.03245 -14.81041 -14.63066 -14.44073 -14.19106 -13.44982 -13.29346 -12.92846 -12.86913 -12.82036 -12.52739 -12.50334 -12.27992 -11.99273 -11.88511 -11.75305 -11.59073 -11.33743 -11.09397 -10.75193 -9.54087 -9.12530 -8.31862 -8.26418 -6.27990 0.26518 0.63585 1.21039 1.33514 1.35244 1.44619 2.33949 2.78522 3.02869 3.10390 3.24348 3.96064 4.10985 4.27703 4.31533 4.42157 4.49271 4.65722 4.73247 4.79019 4.86527 4.92409 4.99018 5.00605 5.01307 5.20803 5.35018 5.42840 5.44104 5.51458 5.64539 5.76123 6.07439 6.38797 6.57538 6.77580 6.92743 7.15114 7.34836 8.89312 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021187 B = 0.006152 C = 0.005619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.260889 B = 4550.255328 C = 4982.028504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.085 3.915 3 C -0.127 4.127 4 N -0.488 5.488 5 C 0.178 3.822 6 C -0.505 4.505 7 H 0.045 0.955 8 C 0.014 3.986 9 N -0.945 5.945 10 Si 0.934 3.066 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.252 1.252 14 C 0.012 3.988 15 C -0.107 4.107 16 C -0.171 4.171 17 C 0.004 3.996 18 Cl -0.071 7.071 19 C -0.195 4.195 20 C 0.245 3.755 21 N -0.855 5.855 22 H 0.074 0.926 23 H 0.067 0.933 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.001 0.999 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.407 0.593 36 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 14.787 -10.531 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.022 4.022 3 C -0.184 4.184 4 N -0.208 5.208 5 C 0.052 3.948 6 C -0.543 4.543 7 H 0.063 0.937 8 C -0.183 4.183 9 N -0.586 5.586 10 Si 0.759 3.241 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.176 1.176 14 C -0.087 4.087 15 C -0.128 4.128 16 C -0.193 4.193 17 C -0.023 4.023 18 Cl -0.042 7.042 19 C -0.219 4.219 20 C 0.136 3.864 21 N -0.393 5.393 22 H 0.093 0.907 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.081 0.919 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.071 0.929 29 H 0.019 0.981 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.149 0.851 33 H 0.157 0.843 34 H 0.166 0.834 35 H 0.238 0.762 36 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -3.519 14.691 -10.544 18.423 hybrid contribution -0.779 -1.021 -0.090 1.287 sum -4.298 13.671 -10.634 17.845 Atomic orbital electron populations 1.22737 0.97468 1.01469 1.02893 1.21603 0.93236 0.94947 0.92450 1.21706 1.01119 0.93870 1.01733 1.59645 1.59567 1.01750 0.99884 1.19968 0.93964 0.85371 0.95468 1.21190 1.27311 0.92522 1.13299 0.93715 1.25672 0.97131 0.98487 0.97019 1.70027 1.45213 1.08942 1.34448 0.85906 0.80147 0.78703 0.79378 1.19682 1.20835 1.17588 1.18663 0.91548 1.03129 0.95339 1.21877 0.96060 0.98291 0.96554 1.20775 0.99880 1.02964 0.95639 1.20602 0.93747 0.98353 0.89585 1.98342 1.91070 1.77689 1.37097 1.20412 0.94935 1.07903 0.98671 1.17538 0.85521 0.92028 0.91296 1.42481 1.03412 1.62589 1.30812 0.90697 0.91417 0.93555 0.91864 0.91194 0.92605 0.92926 0.98137 0.96720 0.92567 0.85069 0.84323 0.83381 0.76250 0.76430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.97 7.48 71.98 0.54 -5.43 16 2 C 0.08 2.99 2.83 44.91 0.13 3.12 16 3 C -0.13 -3.61 8.93 71.98 0.64 -2.96 16 4 N -0.49 -18.75 3.68 -674.98 -2.49 -21.24 16 5 C 0.18 8.25 3.15 85.56 0.27 8.51 16 6 C -0.50 -28.03 9.16 25.60 0.23 -27.79 16 7 H 0.04 2.74 7.36 -2.91 -0.02 2.72 16 8 C 0.01 0.82 5.47 84.65 0.46 1.28 16 9 N -0.95 -57.98 13.96 21.45 0.30 -57.68 16 10 Si 0.93 43.83 27.38 68.60 1.88 45.71 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 H -0.25 -11.09 6.68 99.48 0.66 -10.43 16 14 C 0.01 0.40 3.25 38.21 0.12 0.52 16 15 C -0.11 -3.31 6.99 22.37 0.16 -3.16 16 16 C -0.17 -4.58 9.82 22.31 0.22 -4.36 16 17 C 0.00 0.11 6.32 22.33 0.14 0.25 16 18 Cl -0.07 -1.55 28.95 -2.72 -0.08 -1.63 16 19 C -0.19 -4.90 9.67 22.40 0.22 -4.69 16 20 C 0.25 7.08 6.70 38.23 0.26 7.33 16 21 N -0.85 -21.53 9.09 -50.97 -0.46 -21.99 16 22 H 0.07 2.15 5.38 -2.39 -0.01 2.13 16 23 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 24 H 0.05 1.66 5.50 -2.38 -0.01 1.65 16 25 H 0.06 2.65 6.89 -2.39 -0.02 2.63 16 26 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.05 1.46 7.24 -2.39 -0.02 1.44 16 29 H 0.00 0.05 4.63 -2.39 -0.01 0.04 16 30 H 0.01 0.71 7.19 -2.39 -0.02 0.69 16 31 H 0.27 15.29 8.31 -92.71 -0.77 14.51 16 32 H 0.13 4.13 4.96 -2.91 -0.01 4.11 16 33 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 34 H 0.15 3.01 8.06 -2.91 -0.02 2.99 16 35 H 0.41 11.75 8.11 -92.71 -0.75 10.99 16 36 H 0.41 7.52 8.85 -92.71 -0.82 6.70 16 Total: -1.00 -61.81 298.68 2.04 -59.77 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: -0.49 Total: 24.42 kcal Atomic # 6 Polarization: -30.75 SS G_CDS: 3.39 Total: -27.36 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -2.65 Total: -100.91 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.71 kcal Atomic # 17 Polarization: -1.55 SS G_CDS: -0.08 Total: -1.63 kcal Total: -61.81 2.04 -59.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.573 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds