Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46891 * 2 1 4 4 N 1.46894 * 109.47124 * 120.00219 * 2 1 3 5 5 C 1.46902 * 111.00196 * 67.23920 * 4 2 1 6 6 C 1.50699 * 109.47448 * 283.07805 * 5 4 2 7 7 H 1.08001 * 119.99626 * 354.70617 * 6 5 4 8 8 C 1.37875 * 120.00193 * 174.70632 * 6 5 4 9 9 N 1.31509 * 119.99913 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99893 * 180.02562 * 8 6 5 11 11 H 1.48493 * 109.47572 * 90.00244 * 10 8 6 12 12 H 1.48510 * 109.46918 * 210.00343 * 10 8 6 13 13 H 1.48501 * 109.47121 * 329.99798 * 10 8 6 14 14 C 1.40100 * 111.00190 * 191.19732 * 4 2 1 15 15 C 1.39456 * 120.10074 * 115.98554 * 14 4 2 16 16 N 1.40020 * 120.09011 * 359.97438 * 15 14 4 17 17 C 1.38661 * 119.82130 * 179.72650 * 15 14 4 18 18 C 1.38297 * 120.01347 * 0.27221 * 17 15 14 19 19 C 1.38218 * 120.20387 * 359.97438 * 18 17 15 20 20 C 1.38394 * 120.17795 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.00880 * 179.97438 * 20 19 18 22 22 H 1.08999 * 109.47071 * 291.64627 * 1 2 3 23 23 H 1.08999 * 109.47457 * 51.64575 * 1 2 3 24 24 H 1.09006 * 109.47464 * 171.64750 * 1 2 3 25 25 H 1.08998 * 109.46941 * 240.00353 * 2 1 3 26 26 H 1.09001 * 109.46538 * 180.02562 * 3 2 1 27 27 H 1.09004 * 109.47099 * 299.99696 * 3 2 1 28 28 H 1.08998 * 109.47040 * 60.00414 * 3 2 1 29 29 H 1.09003 * 109.46836 * 43.08257 * 5 4 2 30 30 H 1.08998 * 109.47167 * 163.07718 * 5 4 2 31 31 H 0.97004 * 120.00017 * 179.97438 * 9 8 6 32 32 H 0.97006 * 119.99828 * 179.72335 * 16 15 14 33 33 H 0.97000 * 119.99920 * 359.44830 * 16 15 14 34 34 H 1.07997 * 119.99385 * 180.25220 * 17 15 14 35 35 H 1.08001 * 119.89674 * 179.97438 * 18 17 15 36 36 H 1.08004 * 119.90916 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.6949 -2.1243 1.1500 6 6 0.2386 -2.3210 1.4840 7 1 -0.3629 -1.4790 1.7933 8 6 -0.3259 -3.5757 1.3945 9 7 0.4065 -4.6008 1.0173 10 14 -2.1312 -3.8193 1.8078 11 1 -2.9488 -3.6362 0.5818 12 1 -2.3366 -5.1906 2.3395 13 1 -2.5434 -2.8249 2.8308 14 6 3.3967 -0.4954 1.3660 15 6 3.8748 0.1937 2.4801 16 7 2.9799 0.6911 3.4352 17 6 5.2392 0.3805 2.6421 18 6 6.1217 -0.1110 1.6975 19 6 5.6484 -0.7897 0.5904 20 6 4.2883 -0.9808 0.4205 21 17 3.6985 -1.8333 -0.9721 22 1 -0.3633 0.3791 0.9552 23 1 -0.3634 0.6377 -0.8059 24 1 -0.3634 -1.0168 -0.1493 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.8932 -2.5076 0.1490 30 1 2.3091 -2.6613 1.8728 31 1 0.0095 -5.4837 0.9548 32 1 3.3142 1.1668 4.2117 33 1 2.0255 0.5635 3.3183 34 1 5.6128 0.9102 3.5059 35 1 7.1840 0.0360 1.8254 36 1 6.3419 -1.1719 -0.1442 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042528890.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = 12.259541 kcal Electronic energy + Delta-G solvation = -19251.940271 eV Core-core repulsion = 16375.218364 eV Total energy + Delta-G solvation = -2876.721907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.05739 -38.14398 -37.38287 -35.03705 -34.71662 -32.94723 -30.80423 -29.61567 -27.97682 -27.25500 -24.26004 -23.34352 -22.59287 -20.86648 -18.72849 -18.06134 -17.64296 -16.95656 -16.63465 -15.85998 -15.73023 -15.28102 -15.09059 -15.01086 -14.39537 -14.08157 -13.60168 -13.21389 -13.05120 -12.88084 -12.82961 -12.69240 -12.63042 -12.46989 -12.39592 -11.98640 -11.90549 -11.56285 -11.34275 -11.22547 -10.94668 -10.47044 -9.39625 -8.95185 -8.27930 -8.06822 -6.12416 0.34856 0.69485 1.31465 1.42729 1.42860 1.53524 2.44771 2.88663 3.17086 3.23456 3.29709 4.15575 4.24036 4.29532 4.43266 4.52794 4.61146 4.73333 4.81855 4.93781 5.06582 5.11012 5.15268 5.27308 5.33787 5.37788 5.41323 5.59110 5.65534 5.77045 5.80717 5.92190 6.22569 6.42867 6.62429 6.97143 6.99762 7.21707 7.51125 9.01838 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.021030 B = 0.007386 C = 0.007024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.100128 B = 3789.847555 C = 3985.640809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.076 3.924 3 C -0.128 4.128 4 N -0.486 5.486 5 C 0.205 3.795 6 C -0.498 4.498 7 H 0.073 0.927 8 C -0.002 4.002 9 N -0.936 5.936 10 Si 0.957 3.043 11 H -0.276 1.276 12 H -0.290 1.290 13 H -0.263 1.263 14 C 0.012 3.988 15 C 0.236 3.764 16 N -0.855 5.855 17 C -0.196 4.196 18 C -0.063 4.063 19 C -0.182 4.182 20 C -0.043 4.043 21 Cl -0.083 7.083 22 H 0.052 0.948 23 H 0.057 0.943 24 H 0.053 0.947 25 H 0.034 0.966 26 H 0.043 0.957 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.008 0.992 30 H -0.024 1.024 31 H 0.258 0.742 32 H 0.407 0.593 33 H 0.405 0.595 34 H 0.156 0.844 35 H 0.163 0.837 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.827 12.952 1.483 15.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.031 4.031 3 C -0.185 4.185 4 N -0.209 5.209 5 C 0.080 3.920 6 C -0.537 4.537 7 H 0.091 0.909 8 C -0.199 4.199 9 N -0.578 5.578 10 Si 0.783 3.217 11 H -0.202 1.202 12 H -0.216 1.216 13 H -0.187 1.187 14 C -0.088 4.088 15 C 0.127 3.873 16 N -0.394 5.394 17 C -0.219 4.219 18 C -0.082 4.082 19 C -0.204 4.204 20 C -0.072 4.072 21 Cl -0.054 7.054 22 H 0.072 0.928 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.025 0.975 30 H -0.006 1.006 31 H 0.067 0.933 32 H 0.237 0.763 33 H 0.234 0.766 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 8.484 12.899 1.733 15.536 hybrid contribution -0.853 -1.260 -0.568 1.624 sum 7.631 11.639 1.165 13.966 Atomic orbital electron populations 1.21943 0.94393 1.01965 1.00693 1.21727 0.96079 0.94466 0.90844 1.21756 1.00022 0.94683 1.02075 1.59736 1.08767 1.13547 1.38813 1.19605 0.95066 0.82130 0.95180 1.21603 0.95505 0.93827 1.42742 0.90854 1.25800 1.02081 0.95934 0.96089 1.70122 1.37632 1.00162 1.49869 0.85562 0.80421 0.77135 0.78582 1.20216 1.21616 1.18730 1.18514 0.89715 1.04649 0.95936 1.17704 0.90554 0.91194 0.87815 1.42420 1.08670 1.63424 1.24840 1.20940 0.89955 1.07813 1.03191 1.21127 1.00922 0.94572 0.91586 1.20951 0.92055 1.05614 1.01736 1.21951 0.95527 0.99458 0.90284 1.98340 1.88394 1.76272 1.42351 0.92848 0.92377 0.92816 0.94767 0.93798 0.91368 0.92099 0.97463 1.00575 0.93322 0.76258 0.76568 0.82630 0.81910 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 7.80 71.98 0.56 -4.57 16 2 C 0.08 2.94 2.24 44.92 0.10 3.04 16 3 C -0.13 -3.99 8.83 71.98 0.64 -3.36 16 4 N -0.49 -20.57 3.52 -674.92 -2.38 -22.95 16 5 C 0.21 10.87 3.92 85.56 0.33 11.21 16 6 C -0.50 -27.44 6.63 25.60 0.17 -27.27 16 7 H 0.07 3.88 6.05 -2.91 -0.02 3.87 16 8 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 9 N -0.94 -57.20 13.29 21.45 0.28 -56.91 16 10 Si 0.96 44.59 29.54 68.60 2.03 46.61 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.79 16 13 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 14 C 0.01 0.44 2.83 38.23 0.11 0.55 16 15 C 0.24 7.31 6.78 38.23 0.26 7.57 16 16 N -0.85 -22.65 9.09 -50.97 -0.46 -23.12 16 17 C -0.20 -4.77 9.89 22.38 0.22 -4.55 16 18 C -0.06 -1.50 10.04 22.28 0.22 -1.28 16 19 C -0.18 -5.42 9.82 22.30 0.22 -5.20 16 20 C -0.04 -1.60 5.70 22.42 0.13 -1.47 16 21 Cl -0.08 -3.33 22.93 -2.72 -0.06 -3.40 16 22 H 0.05 2.02 7.55 -2.39 -0.02 2.00 16 23 H 0.06 1.89 8.13 -2.39 -0.02 1.87 16 24 H 0.05 2.46 5.83 -2.38 -0.01 2.45 16 25 H 0.03 1.45 5.25 -2.39 -0.01 1.44 16 26 H 0.04 1.40 6.76 -2.39 -0.02 1.38 16 27 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 28 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.01 0.43 5.33 -2.39 -0.01 0.42 16 30 H -0.02 -1.45 7.90 -2.39 -0.02 -1.47 16 31 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 32 H 0.41 7.70 8.85 -92.70 -0.82 6.88 16 33 H 0.40 12.23 8.11 -92.71 -0.75 11.48 16 34 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 Total: -1.00 -65.87 298.15 2.37 -63.49 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.46 Total: 21.25 kcal Atomic # 6 Polarization: -28.40 SS G_CDS: 3.42 Total: -24.98 kcal Atomic # 7 Polarization: -100.42 SS G_CDS: -2.56 Total: -102.98 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Atomic # 17 Polarization: -3.33 SS G_CDS: -0.06 Total: -3.40 kcal Total: -65.87 2.37 -63.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042528890.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.753 kcal (2) G-P(sol) polarization free energy of solvation -65.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds