Wall clock time and date at job start Mon Mar 30 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46775 * 2 1 4 4 N 1.46905 * 109.47180 * 119.99832 * 2 1 3 5 5 C 1.46903 * 110.99437 * 152.14403 * 4 2 1 6 6 C 1.50699 * 109.47150 * 293.95112 * 5 4 2 7 7 H 1.07995 * 119.99861 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99605 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99764 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47253 * 90.00067 * 10 8 6 12 12 H 1.48502 * 109.47309 * 210.00145 * 10 8 6 13 13 H 1.48509 * 109.47353 * 330.00387 * 10 8 6 14 14 C 1.46893 * 110.99981 * 276.09511 * 4 2 1 15 15 C 1.50706 * 109.46915 * 71.52637 * 14 4 2 16 16 C 1.34515 * 125.78936 * 82.70116 * 15 14 4 17 17 C 1.41383 * 106.84161 * 180.02562 * 16 15 14 18 18 C 1.34517 * 106.83774 * 359.97438 * 17 16 15 19 19 N 1.48035 * 125.78613 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00659 * 0.02562 * 19 18 17 21 21 O 1.21806 * 119.99917 * 180.02562 * 19 18 17 22 22 O 1.34299 * 125.78670 * 262.38675 * 15 14 4 23 23 H 1.09002 * 109.47502 * 293.22243 * 1 2 3 24 24 H 1.09003 * 109.47315 * 53.22270 * 1 2 3 25 25 H 1.09005 * 109.46935 * 173.22533 * 1 2 3 26 26 H 1.09000 * 109.47523 * 240.00358 * 2 1 3 27 27 H 1.09007 * 109.46586 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47074 * 299.99743 * 3 2 1 29 29 H 1.08999 * 109.46873 * 60.00700 * 3 2 1 30 30 H 1.08999 * 109.47494 * 53.96095 * 5 4 2 31 31 H 1.09005 * 109.46451 * 173.95801 * 5 4 2 32 32 H 0.97002 * 120.00190 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47236 * 191.52552 * 14 4 2 34 34 H 1.09003 * 109.47622 * 311.52405 * 14 4 2 35 35 H 1.08005 * 126.57765 * 359.97438 * 16 15 14 36 36 H 1.07997 * 126.58253 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3383 -1.2935 0.9588 6 6 3.2100 -2.3936 -0.0631 7 1 2.2454 -2.6231 -0.4912 8 6 4.3241 -3.1072 -0.4514 9 7 5.4985 -2.8280 0.0704 10 14 4.1652 -4.4704 -1.7185 11 1 4.3583 -3.9069 -3.0788 12 1 5.1962 -5.5078 -1.4615 13 1 2.8145 -5.0804 -1.6227 14 6 2.0578 0.2161 2.3531 15 6 0.6512 0.5137 2.8049 16 6 -0.0978 -0.2626 3.6085 17 6 -1.3399 0.3932 3.7699 18 6 -1.2754 1.5313 3.0558 19 7 -2.3533 2.5384 2.9329 20 8 -3.4128 2.3702 3.5099 21 8 -2.1809 3.5354 2.2547 22 8 -0.0649 1.6019 2.4782 23 1 -0.3634 0.4052 0.9444 24 1 -0.3634 0.6153 -0.8231 25 1 -0.3633 -1.0205 -0.1212 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 4.0230 -0.5308 0.5877 31 1 3.7249 -1.7064 1.8906 32 1 6.2823 -3.3303 -0.2026 33 1 2.6092 -0.2538 3.1675 34 1 2.5521 1.1448 2.0681 35 1 0.1935 -1.2063 4.0457 36 1 -2.1794 0.0469 4.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042530683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:09 Heat of formation + Delta-G solvation = 34.273969 kcal Electronic energy + Delta-G solvation = -20955.950594 eV Core-core repulsion = 17639.474140 eV Total energy + Delta-G solvation = -3316.476454 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -43.48452 -41.97555 -38.07116 -36.77477 -33.69582 -33.02658 -31.96168 -30.75249 -28.36527 -26.90584 -26.05316 -24.17932 -22.39280 -22.26860 -21.24940 -19.70812 -19.30642 -18.75784 -17.99790 -16.64569 -16.36522 -15.78597 -15.45242 -14.83915 -14.23675 -14.03640 -13.48254 -13.28877 -13.08931 -12.81123 -12.31088 -12.23652 -11.83061 -11.77358 -11.52498 -11.35736 -11.20782 -11.12460 -10.89097 -10.84270 -10.66473 -10.53184 -10.14179 -10.04024 -9.45414 -9.05553 -8.59220 -7.59203 -6.17850 -4.19826 -0.18465 0.53596 1.48790 2.13938 2.81629 3.23171 3.30370 3.34043 4.28714 4.33311 4.41616 4.64712 4.86497 5.18350 5.23261 5.24638 5.38618 5.44105 5.61873 5.64638 5.79047 5.91005 5.93429 6.07888 6.12582 6.17282 6.34983 6.42988 6.60962 6.65194 7.02413 7.13035 7.49987 7.59452 7.80690 7.94081 8.28068 8.87091 9.45174 10.92743 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.004429 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.780883 B = 6320.501878 C = 6404.656385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.075 3.925 3 C -0.183 4.183 4 N -0.522 5.522 5 C 0.194 3.806 6 C -0.511 4.511 7 H 0.065 0.935 8 C 0.059 3.941 9 N -0.896 5.896 10 Si 0.898 3.102 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.272 1.272 14 C 0.106 3.894 15 C 0.110 3.890 16 C -0.211 4.211 17 C -0.069 4.069 18 C -0.012 4.012 19 N 0.073 4.927 20 O -0.144 6.144 21 O -0.145 6.145 22 O -0.150 6.150 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.054 0.946 30 H -0.001 1.001 31 H 0.034 0.966 32 H 0.263 0.737 33 H 0.113 0.887 34 H 0.067 0.933 35 H 0.176 0.824 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.386 6.485 6.395 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 C -0.241 4.241 4 N -0.248 5.248 5 C 0.070 3.930 6 C -0.549 4.549 7 H 0.083 0.917 8 C -0.143 4.143 9 N -0.535 5.535 10 Si 0.726 3.274 11 H -0.207 1.207 12 H -0.212 1.212 13 H -0.197 1.197 14 C -0.023 4.023 15 C 0.056 3.944 16 C -0.231 4.231 17 C -0.091 4.091 18 C -0.144 4.144 19 N 0.591 4.409 20 O -0.356 6.356 21 O -0.363 6.363 22 O -0.046 6.046 23 H 0.064 0.936 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.118 0.882 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.017 0.983 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.131 0.869 34 H 0.085 0.915 35 H 0.193 0.807 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.917 5.796 6.377 12.401 hybrid contribution 0.227 0.080 -0.845 0.878 sum -8.690 5.876 5.533 11.860 Atomic orbital electron populations 1.22000 0.96165 1.01548 1.00538 1.21716 0.94243 0.92120 0.95280 1.22488 1.01592 0.98446 1.01611 1.62389 1.31524 1.28959 1.01880 1.19816 0.81850 0.93718 0.97593 1.21075 0.94448 1.16647 1.22773 0.91711 1.24958 0.95138 0.97513 0.96720 1.69938 0.99004 1.41297 1.43309 0.86489 0.77962 0.81550 0.81406 1.20656 1.21171 1.19725 1.21062 0.84699 0.98748 0.97743 1.23413 0.95027 0.82746 0.93170 1.21783 0.92599 1.03479 1.05241 1.21825 1.00103 0.90616 0.96510 1.22077 0.86027 0.95478 1.10829 1.42171 0.99799 0.99829 0.99074 1.94589 1.10841 1.82926 1.47252 1.94616 1.86975 1.17289 1.37397 1.84048 1.20597 1.41886 1.58084 0.93619 0.93244 0.92301 0.88176 0.92268 0.92532 0.92701 0.98350 0.94777 0.92737 0.86898 0.91518 0.80666 0.80702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.38 9.25 37.15 0.34 -2.03 16 2 C 0.07 1.34 2.62 -67.71 -0.18 1.16 16 3 C -0.18 -2.93 7.94 37.16 0.30 -2.63 16 4 N -0.52 -9.78 4.37 -229.51 -1.00 -10.78 16 5 C 0.19 4.47 4.66 -4.97 -0.02 4.44 16 6 C -0.51 -13.18 8.15 -34.44 -0.28 -13.46 16 7 H 0.06 1.68 7.44 -52.49 -0.39 1.29 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -24.95 13.29 55.43 0.74 -24.21 16 10 Si 0.90 20.55 29.54 -169.99 -5.02 15.53 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 13 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 14 C 0.11 1.59 5.01 -4.98 -0.02 1.57 16 15 C 0.11 1.54 4.48 -35.62 -0.16 1.38 16 16 C -0.21 -2.55 10.81 -39.70 -0.43 -2.97 16 17 C -0.07 -0.80 10.57 -39.70 -0.42 -1.22 16 18 C -0.01 -0.16 7.85 -10.94 -0.09 -0.25 16 19 N 0.07 1.09 4.46 32.63 0.15 1.24 16 20 O -0.14 -2.05 19.01 -29.46 -0.56 -2.61 16 21 O -0.14 -2.32 19.26 -32.38 -0.62 -2.94 16 22 O -0.15 -2.24 8.00 0.97 0.01 -2.23 16 23 H 0.05 0.73 3.47 -51.93 -0.18 0.55 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 2.03 6.61 -51.93 -0.34 1.69 16 27 H 0.06 0.99 7.54 -51.93 -0.39 0.59 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.84 4.94 -51.93 -0.26 0.58 16 30 H 0.00 -0.03 7.53 -51.93 -0.39 -0.42 16 31 H 0.03 0.83 7.87 -51.93 -0.41 0.42 16 32 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 33 H 0.11 1.54 7.82 -51.93 -0.41 1.14 16 34 H 0.07 0.98 5.50 -51.93 -0.29 0.70 16 35 H 0.18 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.18 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 303.59 15.07 4.58 4.58 Total: -1.00 -27.82 303.59 -7.10 -34.93 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -4.30 Total: -0.94 kcal Atomic # 6 Polarization: -11.49 SS G_CDS: -1.06 Total: -12.55 kcal Atomic # 7 Polarization: -33.64 SS G_CDS: -0.12 Total: -33.76 kcal Atomic # 8 Polarization: -6.61 SS G_CDS: -1.18 Total: -7.79 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -27.82 -7.10 -34.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.200 kcal (2) G-P(sol) polarization free energy of solvation -27.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds