Wall clock time and date at job start Mon Mar 30 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53007 * 109.46775 * 2 1 4 4 N 1.46905 * 109.47180 * 119.99832 * 2 1 3 5 5 C 1.46903 * 110.99437 * 152.14403 * 4 2 1 6 6 C 1.50699 * 109.47150 * 293.95112 * 5 4 2 7 7 H 1.07995 * 119.99861 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99605 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00405 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 119.99764 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47253 * 90.00067 * 10 8 6 12 12 H 1.48502 * 109.47309 * 210.00145 * 10 8 6 13 13 H 1.48509 * 109.47353 * 330.00387 * 10 8 6 14 14 C 1.46893 * 110.99981 * 276.09511 * 4 2 1 15 15 C 1.50706 * 109.46915 * 71.52637 * 14 4 2 16 16 C 1.34515 * 125.78936 * 82.70116 * 15 14 4 17 17 C 1.41383 * 106.84161 * 180.02562 * 16 15 14 18 18 C 1.34517 * 106.83774 * 359.97438 * 17 16 15 19 19 N 1.48035 * 125.78613 * 180.02562 * 18 17 16 20 20 O 1.21802 * 120.00659 * 0.02562 * 19 18 17 21 21 O 1.21806 * 119.99917 * 180.02562 * 19 18 17 22 22 O 1.34299 * 125.78670 * 262.38675 * 15 14 4 23 23 H 1.09002 * 109.47502 * 293.22243 * 1 2 3 24 24 H 1.09003 * 109.47315 * 53.22270 * 1 2 3 25 25 H 1.09005 * 109.46935 * 173.22533 * 1 2 3 26 26 H 1.09000 * 109.47523 * 240.00358 * 2 1 3 27 27 H 1.09007 * 109.46586 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47074 * 299.99743 * 3 2 1 29 29 H 1.08999 * 109.46873 * 60.00700 * 3 2 1 30 30 H 1.08999 * 109.47494 * 53.96095 * 5 4 2 31 31 H 1.09005 * 109.46451 * 173.95801 * 5 4 2 32 32 H 0.97002 * 120.00190 * 179.97438 * 9 8 6 33 33 H 1.08999 * 109.47236 * 191.52552 * 14 4 2 34 34 H 1.09003 * 109.47622 * 311.52405 * 14 4 2 35 35 H 1.08005 * 126.57765 * 359.97438 * 16 15 14 36 36 H 1.07997 * 126.58253 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3383 -1.2935 0.9588 6 6 3.2100 -2.3936 -0.0631 7 1 2.2454 -2.6231 -0.4912 8 6 4.3241 -3.1072 -0.4514 9 7 5.4985 -2.8280 0.0704 10 14 4.1652 -4.4704 -1.7185 11 1 4.3583 -3.9069 -3.0788 12 1 5.1962 -5.5078 -1.4615 13 1 2.8145 -5.0804 -1.6227 14 6 2.0578 0.2161 2.3531 15 6 0.6512 0.5137 2.8049 16 6 -0.0978 -0.2626 3.6085 17 6 -1.3399 0.3932 3.7699 18 6 -1.2754 1.5313 3.0558 19 7 -2.3533 2.5384 2.9329 20 8 -3.4128 2.3702 3.5099 21 8 -2.1809 3.5354 2.2547 22 8 -0.0649 1.6019 2.4782 23 1 -0.3634 0.4052 0.9444 24 1 -0.3634 0.6153 -0.8231 25 1 -0.3633 -1.0205 -0.1212 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 4.0230 -0.5308 0.5877 31 1 3.7249 -1.7064 1.8906 32 1 6.2823 -3.3303 -0.2026 33 1 2.6092 -0.2538 3.1675 34 1 2.5521 1.1448 2.0681 35 1 0.1935 -1.2063 4.0457 36 1 -2.1794 0.0469 4.3545 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042530683.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:09 Heat of formation + Delta-G solvation = 18.204776 kcal Electronic energy + Delta-G solvation = -20956.647407 eV Core-core repulsion = 17639.474140 eV Total energy + Delta-G solvation = -3317.173267 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.126 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.54698 -43.09311 -39.52609 -37.89811 -34.97197 -34.72808 -33.18342 -32.22415 -29.79235 -28.23266 -27.62140 -25.46323 -24.02932 -23.42101 -22.38860 -20.78345 -20.68873 -19.87428 -19.12965 -18.41242 -17.72538 -17.00105 -16.91519 -16.43170 -15.89302 -15.02635 -14.89553 -14.49976 -14.29987 -14.15768 -13.94520 -13.55918 -13.42525 -12.97257 -12.82981 -12.70276 -12.68122 -12.53159 -12.50763 -12.34071 -12.19968 -11.86194 -11.61294 -11.47259 -11.34558 -10.61459 -10.17369 -9.14359 -8.20332 -6.28194 -1.28825 -0.52592 0.39555 1.15619 1.42092 1.43745 1.53879 1.72941 2.40878 3.12883 3.19165 3.30888 3.44576 3.84522 3.98336 4.02741 4.19212 4.29780 4.42815 4.46959 4.55570 4.60105 4.70554 4.85106 4.93948 4.96771 5.03731 5.09229 5.16653 5.32211 5.37813 5.40637 5.66076 6.02415 6.22039 6.36679 6.49511 6.86184 7.40834 8.90098 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.035899 B = 0.004429 C = 0.004371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.780883 B = 6320.501878 C = 6404.656385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.074 3.926 3 C -0.175 4.175 4 N -0.525 5.525 5 C 0.210 3.790 6 C -0.519 4.519 7 H 0.060 0.940 8 C 0.009 3.991 9 N -0.930 5.930 10 Si 0.959 3.041 11 H -0.277 1.277 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.106 3.894 15 C 0.096 3.904 16 C -0.197 4.197 17 C -0.044 4.044 18 C -0.030 4.030 19 N 0.074 4.926 20 O -0.117 6.117 21 O -0.194 6.194 22 O -0.168 6.168 23 H 0.051 0.949 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.063 0.937 30 H -0.025 1.025 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.127 0.873 34 H 0.068 0.932 35 H 0.198 0.802 36 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.903 5.709 7.196 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.035 4.035 3 C -0.233 4.233 4 N -0.250 5.250 5 C 0.084 3.916 6 C -0.558 4.558 7 H 0.078 0.922 8 C -0.189 4.189 9 N -0.570 5.570 10 Si 0.785 3.215 11 H -0.203 1.203 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.022 4.022 15 C 0.043 3.957 16 C -0.217 4.217 17 C -0.065 4.065 18 C -0.163 4.163 19 N 0.589 4.411 20 O -0.338 6.338 21 O -0.400 6.400 22 O -0.065 6.065 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.087 0.913 29 H 0.082 0.918 30 H -0.008 1.008 31 H 0.038 0.962 32 H 0.073 0.927 33 H 0.145 0.855 34 H 0.086 0.914 35 H 0.216 0.784 36 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -10.408 5.103 7.118 13.602 hybrid contribution 0.627 0.296 -0.990 1.209 sum -9.781 5.399 6.127 12.742 Atomic orbital electron populations 1.21918 0.94642 1.01460 1.01404 1.21669 0.95323 0.92590 0.93872 1.22395 1.00713 0.97514 1.02679 1.62254 1.28811 1.30649 1.03291 1.19435 0.83503 0.92641 0.96000 1.21382 0.94173 1.17127 1.23095 0.92162 1.25729 0.94889 0.99752 0.98554 1.70042 0.99653 1.42541 1.44796 0.85529 0.78038 0.78869 0.79072 1.20305 1.20899 1.19115 1.21043 0.86198 0.98219 0.96720 1.23161 0.94709 0.83378 0.94423 1.22122 0.92144 1.03627 1.03782 1.22286 1.00606 0.88802 0.94808 1.22264 0.85799 0.96015 1.12189 1.42286 1.00086 0.99900 0.98839 1.94554 1.10899 1.82460 1.45918 1.94631 1.87523 1.18505 1.39309 1.83995 1.21191 1.42430 1.58890 0.92995 0.92057 0.92912 0.91077 0.93507 0.91271 0.91812 1.00765 0.96165 0.92710 0.85491 0.91374 0.78447 0.77221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.33 9.25 71.98 0.67 -3.66 16 2 C 0.07 2.64 2.62 44.91 0.12 2.75 16 3 C -0.17 -5.55 7.94 71.98 0.57 -4.98 16 4 N -0.53 -19.51 4.37 -880.05 -3.85 -23.35 16 5 C 0.21 9.81 4.66 85.56 0.40 10.21 16 6 C -0.52 -27.04 8.15 25.60 0.21 -26.83 16 7 H 0.06 3.13 7.44 -2.91 -0.02 3.11 16 8 C 0.01 0.50 5.46 84.66 0.46 0.96 16 9 N -0.93 -52.42 13.29 21.45 0.28 -52.13 16 10 Si 0.96 42.14 29.54 68.60 2.03 44.17 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 12 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 13 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 14 C 0.11 3.09 5.01 85.56 0.43 3.52 16 15 C 0.10 2.50 4.48 24.83 0.11 2.61 16 16 C -0.20 -4.08 10.81 22.19 0.24 -3.84 16 17 C -0.04 -0.85 10.57 22.19 0.23 -0.61 16 18 C -0.03 -0.78 7.85 81.07 0.64 -0.14 16 19 N 0.07 2.08 4.46 -154.74 -0.69 1.39 16 20 O -0.12 -3.06 19.01 18.88 0.36 -2.70 16 21 O -0.19 -6.19 19.26 21.66 0.42 -5.77 16 22 O -0.17 -4.74 8.00 2.03 0.02 -4.73 16 23 H 0.05 1.59 3.47 -2.39 -0.01 1.58 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.07 2.94 6.61 -2.39 -0.02 2.93 16 27 H 0.05 1.58 7.54 -2.38 -0.02 1.56 16 28 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 29 H 0.06 1.91 4.94 -2.39 -0.01 1.90 16 30 H -0.03 -1.29 7.53 -2.39 -0.02 -1.31 16 31 H 0.02 1.00 7.87 -2.38 -0.02 0.98 16 32 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 33 H 0.13 3.32 7.82 -2.39 -0.02 3.30 16 34 H 0.07 1.98 5.50 -2.39 -0.01 1.97 16 35 H 0.20 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.21 2.52 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -59.88 303.59 3.74 -56.13 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: 1.10 Total: 7.01 kcal Atomic # 6 Polarization: -24.09 SS G_CDS: 4.07 Total: -20.02 kcal Atomic # 7 Polarization: -69.84 SS G_CDS: -4.25 Total: -74.10 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: 0.79 Total: -13.20 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -59.88 3.74 -56.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042530683.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.338 kcal (2) G-P(sol) polarization free energy of solvation -59.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds