Wall clock time and date at job start Mon Mar 30 2020 06:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 119.99594 * 2 1 4 4 H 1.48501 * 109.47105 * 270.27474 * 3 2 1 5 5 H 1.48498 * 109.47344 * 30.27685 * 3 2 1 6 6 H 1.48501 * 109.46896 * 150.27332 * 3 2 1 7 7 C 1.37869 * 120.00025 * 180.27573 * 2 1 3 8 8 H 1.08000 * 120.00209 * 179.72535 * 7 2 1 9 9 C 1.50699 * 120.00416 * 359.72744 * 7 2 1 10 10 N 1.46897 * 109.47305 * 180.02562 * 9 7 2 11 11 C 1.40354 * 110.99853 * 170.00258 * 10 9 7 12 12 C 1.38950 * 120.01708 * 62.12873 * 11 10 9 13 13 F 1.35098 * 120.00325 * 359.97438 * 12 11 10 14 14 C 1.38314 * 119.98554 * 179.79009 * 12 11 10 15 15 C 1.38852 * 120.01397 * 0.48666 * 14 12 11 16 16 N 1.39972 * 119.98682 * 179.76452 * 15 14 12 17 17 C 1.38853 * 120.02118 * 359.74383 * 15 14 12 18 18 C 1.38307 * 120.01264 * 0.02562 * 17 15 14 19 19 F 1.35104 * 120.00111 * 179.97438 * 18 17 15 20 20 C 1.46900 * 110.99792 * 293.94866 * 10 9 7 21 21 C 1.53001 * 117.50094 * 147.52413 * 20 10 9 22 22 C 1.53002 * 117.49692 * 78.89892 * 20 10 9 23 23 H 0.96996 * 120.00284 * 359.72896 * 1 2 3 24 24 H 1.09003 * 109.46715 * 299.99848 * 9 7 2 25 25 H 1.08998 * 109.47431 * 59.99228 * 9 7 2 26 26 H 1.08001 * 119.99219 * 180.24886 * 14 12 11 27 27 H 0.97001 * 119.99999 * 179.97438 * 16 15 14 28 28 H 0.97004 * 120.00253 * 359.97438 * 16 15 14 29 29 H 1.08007 * 119.98776 * 179.97438 * 17 15 14 30 30 H 1.08999 * 115.55346 * 293.22907 * 20 10 9 31 31 H 1.09002 * 117.49561 * 359.97438 * 21 20 10 32 32 H 1.08993 * 117.50223 * 145.02189 * 21 20 10 33 33 H 1.08999 * 117.49520 * 214.97971 * 22 20 10 34 34 H 1.08995 * 117.49796 * 359.97438 * 22 20 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4907 2.0498 -1.4001 5 1 1.4494 2.6510 0.7059 6 1 3.5495 1.4386 0.6943 7 6 2.0046 -1.1940 -0.0057 8 1 3.0846 -1.1940 -0.0102 9 6 1.2512 -2.4991 -0.0058 10 7 2.2058 -3.6156 -0.0118 11 6 1.5527 -4.8370 0.2154 12 6 0.5931 -5.2895 -0.6818 13 9 0.2880 -4.5536 -1.7730 14 6 -0.0470 -6.4953 -0.4596 15 6 0.2620 -7.2487 0.6651 16 7 -0.3897 -8.4665 0.8921 17 6 1.2174 -6.7946 1.5645 18 6 1.8615 -5.5913 1.3407 19 9 2.7908 -5.1494 2.2163 20 6 2.9663 -3.6511 -1.2682 21 6 4.4088 -4.1575 -1.2067 22 6 4.1292 -2.6681 -1.4180 23 1 -0.4850 0.8400 0.0040 24 1 0.6282 -2.5590 0.8867 25 1 0.6208 -2.5547 -0.8932 26 1 -0.7900 -6.8491 -1.1590 27 1 -0.1737 -8.9932 1.6775 28 1 -1.0573 -8.7839 0.2639 29 1 1.4570 -7.3809 2.4394 30 1 2.3878 -3.8862 -2.1615 31 1 4.7936 -4.4639 -0.2340 32 1 4.7794 -4.7260 -2.0596 33 1 4.3158 -2.2569 -2.4101 34 1 4.3296 -1.9948 -0.5847 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531289.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:48 Heat of formation + Delta-G solvation = -20.427201 kcal Electronic energy + Delta-G solvation = -20783.677096 eV Core-core repulsion = 17353.741106 eV Total energy + Delta-G solvation = -3429.935991 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.108 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.59520 -48.37862 -39.10486 -37.47733 -34.52633 -33.09716 -31.91472 -30.01996 -28.08782 -25.89096 -22.78033 -22.33248 -21.97605 -21.55636 -19.86425 -17.92801 -17.62092 -16.85446 -15.85007 -15.79665 -15.39590 -15.14179 -14.91197 -14.77869 -14.63042 -14.42078 -14.04255 -13.49881 -12.62356 -12.45103 -12.32141 -12.14219 -11.95535 -11.62926 -11.34711 -10.95214 -10.76460 -10.67700 -10.07760 -9.93711 -9.56259 -9.21196 -8.97941 -8.48104 -8.38015 -7.50142 -7.42446 -5.95965 -3.95967 1.30410 1.52746 3.36113 3.41996 3.45900 3.58011 3.72101 4.40498 4.49157 4.58202 4.64092 4.70071 5.12091 5.23246 5.39903 5.58092 5.68949 5.70794 5.85883 6.02142 6.06188 6.21647 6.33973 6.36098 6.43813 6.69425 6.84867 6.94556 7.23946 7.38533 7.40829 7.62049 7.91022 8.09086 8.17469 8.59563 9.09960 9.66477 11.15475 Molecular weight = 268.11amu Principal moments of inertia in cm(-1) A = 0.022814 B = 0.006328 C = 0.005996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.042276 B = 4424.013781 C = 4668.776624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.273 1.273 7 C -0.505 4.505 8 H 0.075 0.925 9 C 0.196 3.804 10 N -0.467 5.467 11 C -0.006 4.006 12 C 0.146 3.854 13 F -0.124 7.124 14 C -0.242 4.242 15 C 0.254 3.746 16 N -0.874 5.874 17 C -0.245 4.245 18 C 0.192 3.808 19 F -0.119 7.119 20 C 0.027 3.973 21 C -0.187 4.187 22 C -0.145 4.145 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.008 0.992 26 H 0.132 0.868 27 H 0.400 0.600 28 H 0.400 0.600 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.346 -16.097 -0.102 16.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.197 1.197 7 C -0.544 4.544 8 H 0.093 0.907 9 C 0.073 3.927 10 N -0.188 5.188 11 C -0.104 4.104 12 C 0.124 3.876 13 F -0.102 7.102 14 C -0.267 4.267 15 C 0.149 3.851 16 N -0.413 5.413 17 C -0.270 4.270 18 C 0.171 3.829 19 F -0.098 7.098 20 C -0.081 4.081 21 C -0.225 4.225 22 C -0.182 4.182 23 H 0.070 0.930 24 H 0.047 0.953 25 H 0.026 0.974 26 H 0.150 0.850 27 H 0.228 0.772 28 H 0.228 0.772 29 H 0.154 0.846 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.572 -15.765 0.267 15.846 hybrid contribution -0.468 0.717 -0.622 1.059 sum 1.104 -15.048 -0.355 15.093 Atomic orbital electron populations 1.69974 1.06054 1.26633 1.51308 1.24973 0.94818 0.99187 0.95647 0.86521 0.79823 0.83264 0.77977 1.20765 1.21373 1.19746 1.21359 0.94043 0.89398 1.49556 0.90735 1.19881 0.89692 0.86306 0.96823 1.59680 1.27255 0.99707 1.32189 1.18890 0.99191 0.96289 0.96019 1.17948 0.95333 0.89675 0.84670 1.91511 1.91588 1.75998 1.51102 1.20366 1.07977 0.96890 1.01431 1.16916 0.90366 0.86034 0.91792 1.42397 1.46852 1.21578 1.30520 1.20324 1.03989 0.98813 1.03830 1.16864 0.87755 0.91371 0.86923 1.91509 1.62453 1.89187 1.66610 1.22101 0.88857 1.05561 0.91571 1.23046 0.99089 0.98268 1.02059 1.23029 1.00657 0.91788 1.02730 0.93038 0.95279 0.97443 0.84961 0.77195 0.77206 0.84640 0.90257 0.88944 0.89949 0.89670 0.87017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 21.95 29.54 -169.99 -5.02 16.93 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -14.31 8.36 -34.44 -0.29 -14.60 16 8 H 0.07 2.04 4.62 -52.49 -0.24 1.80 16 9 C 0.20 5.31 4.27 -4.98 -0.02 5.28 16 10 N -0.47 -10.72 4.43 -164.68 -0.73 -11.44 16 11 C -0.01 -0.11 4.71 -83.42 -0.39 -0.51 16 12 C 0.15 2.73 6.72 -39.29 -0.26 2.46 16 13 F -0.12 -2.54 13.68 2.25 0.03 -2.51 16 14 C -0.24 -3.55 9.87 -39.33 -0.39 -3.94 16 15 C 0.25 3.22 6.76 -83.69 -0.57 2.66 16 16 N -0.87 -7.21 9.10 32.45 0.30 -6.91 16 17 C -0.25 -3.43 9.87 -39.33 -0.39 -3.82 16 18 C 0.19 3.44 7.30 -39.29 -0.29 3.16 16 19 F -0.12 -2.27 17.07 2.25 0.04 -2.24 16 20 C 0.03 0.56 4.28 -67.71 -0.29 0.27 16 21 C -0.19 -3.27 10.46 -26.73 -0.28 -3.55 16 22 C -0.14 -2.83 9.09 -26.73 -0.24 -3.07 16 23 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 24 H 0.03 0.86 8.06 -51.93 -0.42 0.44 16 25 H 0.01 0.22 6.51 -51.93 -0.34 -0.12 16 26 H 0.13 1.62 8.06 -52.49 -0.42 1.20 16 27 H 0.40 2.45 8.84 -40.82 -0.36 2.09 16 28 H 0.40 2.54 8.84 -40.82 -0.36 2.18 16 29 H 0.14 1.52 8.06 -52.48 -0.42 1.09 16 30 H 0.08 1.68 6.66 -51.93 -0.35 1.33 16 31 H 0.09 1.64 8.14 -51.93 -0.42 1.21 16 32 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 34 H 0.11 2.38 5.87 -51.93 -0.30 2.08 16 LS Contribution 293.84 15.07 4.43 4.43 Total: -1.00 -31.93 293.84 -7.35 -39.28 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -3.62 Total: 3.18 kcal Atomic # 6 Polarization: -10.66 SS G_CDS: -3.50 Total: -14.16 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.30 Total: -44.91 kcal Atomic # 9 Polarization: -4.81 SS G_CDS: 0.07 Total: -4.74 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -31.93 -7.35 -39.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531289.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.850 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds