Wall clock time and date at job start Mon Mar 30 2020 07:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48493 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47055 * 299.99852 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99925 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.38679 * 119.99787 * 90.00193 * 10 9 7 12 12 C 1.40256 * 119.23232 * 350.59418 * 11 10 9 13 13 C 1.36209 * 119.87868 * 180.02562 * 12 11 10 14 14 C 1.41008 * 118.29133 * 0.02562 * 13 12 11 15 15 C 1.40345 * 121.24854 * 180.27367 * 14 13 12 16 16 C 1.36214 * 119.63854 * 180.27172 * 15 14 13 17 17 C 1.39285 * 120.84328 * 359.44564 * 16 15 14 18 18 C 1.36143 * 121.03392 * 0.28615 * 17 16 15 19 19 C 1.40533 * 119.75918 * 359.97438 * 18 17 16 20 20 N 1.31711 * 119.22793 * 170.61538 * 11 10 9 21 21 C 1.46500 * 120.00125 * 270.00141 * 10 9 7 22 22 C 1.52999 * 117.49994 * 13.67785 * 21 10 9 23 23 C 1.52997 * 117.49915 * 305.05399 * 21 10 9 24 24 H 0.97001 * 119.99507 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46600 * 60.00435 * 9 7 2 26 26 H 1.08999 * 109.46781 * 300.00224 * 9 7 2 27 27 H 1.08002 * 120.06082 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.85471 * 180.02562 * 13 12 11 29 29 H 1.07995 * 120.18197 * 0.02562 * 15 14 13 30 30 H 1.07992 * 119.57665 * 179.70900 * 16 15 14 31 31 H 1.08003 * 119.48740 * 180.30261 * 17 16 15 32 32 H 1.08003 * 120.11733 * 180.02562 * 18 17 16 33 33 H 1.08998 * 115.54919 * 159.38869 * 21 10 9 34 34 H 1.09001 * 117.49400 * 0.02562 * 22 21 10 35 35 H 1.09002 * 117.49911 * 145.01711 * 22 21 10 36 36 H 1.08998 * 117.50370 * 214.97758 * 23 21 10 37 37 H 1.09002 * 117.49644 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6544 -4.1392 1.2024 12 6 2.3503 -3.4742 2.3992 13 6 2.7875 -3.9793 3.5862 14 6 3.5419 -5.1705 3.5682 15 6 4.0185 -5.7484 4.7551 16 6 4.7489 -6.8968 4.6992 17 6 5.0198 -7.5121 3.4793 18 6 4.5681 -6.9813 2.3099 19 6 3.8157 -5.7945 2.3271 20 7 3.3591 -5.2519 1.1923 21 6 2.6780 -4.1700 -1.2674 22 6 2.4084 -3.3626 -2.5387 23 6 1.6237 -4.6478 -2.2679 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 1.7712 -2.5627 2.3796 28 1 2.5621 -3.4804 4.5171 29 1 3.8106 -5.2830 5.7072 30 1 5.1191 -7.3380 5.6127 31 1 5.5970 -8.4248 3.4609 32 1 4.7865 -7.4711 1.3723 33 1 3.6119 -4.7296 -1.2147 34 1 1.8779 -2.4165 -2.4309 35 1 3.1652 -3.3906 -3.3226 36 1 1.8641 -5.5214 -2.8738 37 1 0.5766 -4.5471 -1.9822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042549577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:15 Heat of formation + Delta-G solvation = 88.529255 kcal Electronic energy + Delta-G solvation = -19652.180561 eV Core-core repulsion = 16781.198807 eV Total energy + Delta-G solvation = -2870.981754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.26933 -38.10996 -36.24522 -33.65638 -32.96671 -32.31003 -29.63924 -29.07384 -27.00588 -23.77987 -23.32284 -22.30882 -21.75479 -21.58207 -19.68343 -17.52477 -17.07707 -16.68114 -16.49071 -14.99218 -14.87210 -14.37976 -14.18362 -13.96021 -13.77111 -13.48919 -12.83808 -12.72568 -12.63694 -12.09165 -11.64785 -11.47987 -11.20734 -11.08388 -10.97948 -10.87867 -10.62092 -10.51837 -10.19533 -10.05462 -9.82734 -9.58431 -8.81782 -8.67617 -8.61079 -7.97243 -6.73547 -6.17226 -4.29302 0.94271 1.46513 2.51768 3.19319 3.28308 3.32696 3.44020 3.67698 4.30067 4.48055 4.75755 4.87397 5.02453 5.10840 5.20930 5.32128 5.40534 5.49751 5.54180 5.59736 5.63748 5.70358 5.87584 6.12734 6.17440 6.20499 6.39106 6.46778 6.54601 6.58555 6.73218 6.79685 6.85105 6.91320 6.96634 7.14270 7.29706 7.65600 7.82851 8.00879 8.25815 8.70866 8.88449 9.38466 10.84296 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.005717 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.746060 B = 4896.266557 C = 5855.883441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.063 0.937 9 C 0.246 3.754 10 N -0.551 5.551 11 C 0.443 3.557 12 C -0.187 4.187 13 C -0.044 4.044 14 C -0.161 4.161 15 C -0.072 4.072 16 C -0.163 4.163 17 C -0.097 4.097 18 C -0.120 4.120 19 C 0.187 3.813 20 N -0.570 5.570 21 C 0.105 3.895 22 C -0.184 4.184 23 C -0.204 4.204 24 H 0.265 0.735 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.151 0.849 28 H 0.132 0.868 29 H 0.119 0.881 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.125 0.875 33 H 0.122 0.878 34 H 0.116 0.884 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.670 -10.004 4.634 12.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.571 4.571 8 H 0.081 0.919 9 C 0.127 3.873 10 N -0.257 5.257 11 C 0.195 3.805 12 C -0.210 4.210 13 C -0.070 4.070 14 C -0.166 4.166 15 C -0.091 4.091 16 C -0.182 4.182 17 C -0.117 4.117 18 C -0.139 4.139 19 C 0.063 3.937 20 N -0.292 5.292 21 C -0.001 4.001 22 C -0.222 4.222 23 C -0.243 4.243 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.168 0.832 28 H 0.150 0.850 29 H 0.137 0.863 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.143 0.857 33 H 0.140 0.860 34 H 0.134 0.866 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.609 -10.193 3.700 12.209 hybrid contribution 0.165 1.464 0.711 1.635 sum 5.774 -8.730 4.410 11.358 Atomic orbital electron populations 1.69936 1.05996 1.27259 1.49852 1.24943 0.94833 0.99270 0.94796 0.86457 0.80192 0.83221 0.77756 1.19648 1.20836 1.20831 1.21541 0.93743 0.90160 1.51645 0.91896 1.19454 0.87079 0.82132 0.98672 1.46637 1.44902 1.33794 1.00405 1.18571 0.87905 0.87523 0.86524 1.21707 1.04836 1.02888 0.91575 1.21193 0.94155 0.93539 0.98063 1.18654 1.04916 0.98476 0.94551 1.20848 0.96301 0.95355 0.96614 1.20605 1.02529 0.97490 0.97564 1.20705 0.99217 0.99388 0.92360 1.20604 0.99538 0.95344 0.98450 1.18504 0.93968 0.93839 0.87424 1.67652 1.20109 1.12570 1.28918 1.21326 0.97674 1.00416 0.80707 1.23399 1.03298 0.97068 0.98441 1.23346 0.98420 0.98063 1.04480 0.92533 0.94042 0.94524 0.83166 0.85006 0.86325 0.86702 0.86428 0.85727 0.86007 0.86561 0.89190 0.89230 0.89061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.28 13.29 55.43 0.74 -23.54 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.53 -13.65 8.59 -34.44 -0.30 -13.94 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 5.84 4.02 -5.19 -0.02 5.82 16 10 N -0.55 -11.85 2.91 -167.55 -0.49 -12.33 16 11 C 0.44 9.33 7.34 -155.49 -1.14 8.19 16 12 C -0.19 -3.69 9.02 -39.55 -0.36 -4.05 16 13 C -0.04 -0.75 9.88 -39.26 -0.39 -1.14 16 14 C -0.16 -2.72 5.74 -106.78 -0.61 -3.34 16 15 C -0.07 -1.00 9.77 -39.52 -0.39 -1.38 16 16 C -0.16 -2.03 9.96 -39.92 -0.40 -2.43 16 17 C -0.10 -1.24 9.94 -39.95 -0.40 -1.64 16 18 C -0.12 -1.84 9.98 -39.47 -0.39 -2.23 16 19 C 0.19 3.42 6.60 -84.86 -0.56 2.86 16 20 N -0.57 -11.54 9.20 -10.21 -0.09 -11.63 16 21 C 0.10 2.01 6.25 -67.93 -0.42 1.58 16 22 C -0.18 -3.28 9.72 -26.73 -0.26 -3.54 16 23 C -0.20 -3.44 10.02 -26.73 -0.27 -3.71 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 25 H 0.04 1.03 6.24 -51.93 -0.32 0.71 16 26 H 0.04 0.92 6.57 -51.93 -0.34 0.58 16 27 H 0.15 3.13 6.14 -52.49 -0.32 2.80 16 28 H 0.13 1.79 8.06 -52.49 -0.42 1.36 16 29 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 30 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 32 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 33 H 0.12 2.28 7.60 -51.93 -0.39 1.89 16 34 H 0.12 2.40 6.29 -51.93 -0.33 2.07 16 35 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 37 H 0.09 1.63 7.82 -51.93 -0.41 1.22 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -27.89 311.90 -10.79 -38.67 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -4.62 Total: 6.06 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -6.00 Total: -17.37 kcal Atomic # 7 Polarization: -47.66 SS G_CDS: 0.15 Total: -47.51 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.89 -10.79 -38.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.204 kcal (2) G-P(sol) polarization free energy of solvation -27.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds