Wall clock time and date at job start Mon Mar 30 2020 07:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00169 * 2 1 4 4 H 1.48493 * 109.46900 * 179.97438 * 3 2 1 5 5 H 1.48492 * 109.47055 * 299.99852 * 3 2 1 6 6 H 1.48500 * 109.46999 * 59.99925 * 3 2 1 7 7 C 1.37875 * 119.99829 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00394 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00003 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.46977 * 179.97438 * 9 7 2 11 11 C 1.38679 * 119.99787 * 90.00193 * 10 9 7 12 12 C 1.40256 * 119.23232 * 350.59418 * 11 10 9 13 13 C 1.36209 * 119.87868 * 180.02562 * 12 11 10 14 14 C 1.41008 * 118.29133 * 0.02562 * 13 12 11 15 15 C 1.40345 * 121.24854 * 180.27367 * 14 13 12 16 16 C 1.36214 * 119.63854 * 180.27172 * 15 14 13 17 17 C 1.39285 * 120.84328 * 359.44564 * 16 15 14 18 18 C 1.36143 * 121.03392 * 0.28615 * 17 16 15 19 19 C 1.40533 * 119.75918 * 359.97438 * 18 17 16 20 20 N 1.31711 * 119.22793 * 170.61538 * 11 10 9 21 21 C 1.46500 * 120.00125 * 270.00141 * 10 9 7 22 22 C 1.52999 * 117.49994 * 13.67785 * 21 10 9 23 23 C 1.52997 * 117.49915 * 305.05399 * 21 10 9 24 24 H 0.97001 * 119.99507 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.46600 * 60.00435 * 9 7 2 26 26 H 1.08999 * 109.46781 * 300.00224 * 9 7 2 27 27 H 1.08002 * 120.06082 * 359.97438 * 12 11 10 28 28 H 1.07999 * 120.85471 * 180.02562 * 13 12 11 29 29 H 1.07995 * 120.18197 * 0.02562 * 15 14 13 30 30 H 1.07992 * 119.57665 * 179.70900 * 16 15 14 31 31 H 1.08003 * 119.48740 * 180.30261 * 17 16 15 32 32 H 1.08003 * 120.11733 * 180.02562 * 18 17 16 33 33 H 1.08998 * 115.54919 * 159.38869 * 21 10 9 34 34 H 1.09001 * 117.49400 * 0.02562 * 22 21 10 35 35 H 1.09002 * 117.49911 * 145.01711 * 22 21 10 36 36 H 1.08998 * 117.50370 * 214.97758 * 23 21 10 37 37 H 1.09002 * 117.49644 * 0.02562 * 23 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6544 -4.1392 1.2024 12 6 2.3503 -3.4742 2.3992 13 6 2.7875 -3.9793 3.5862 14 6 3.5419 -5.1705 3.5682 15 6 4.0185 -5.7484 4.7551 16 6 4.7489 -6.8968 4.6992 17 6 5.0198 -7.5121 3.4793 18 6 4.5681 -6.9813 2.3099 19 6 3.8157 -5.7945 2.3271 20 7 3.3591 -5.2519 1.1923 21 6 2.6780 -4.1700 -1.2674 22 6 2.4084 -3.3626 -2.5387 23 6 1.6237 -4.6478 -2.2679 24 1 -0.4849 0.8401 -0.0004 25 1 0.6240 -2.5575 -0.8880 26 1 0.6246 -2.5563 0.8920 27 1 1.7712 -2.5627 2.3796 28 1 2.5621 -3.4804 4.5171 29 1 3.8106 -5.2830 5.7072 30 1 5.1191 -7.3380 5.6127 31 1 5.5970 -8.4248 3.4609 32 1 4.7865 -7.4711 1.3723 33 1 3.6119 -4.7296 -1.2147 34 1 1.8779 -2.4165 -2.4309 35 1 3.1652 -3.3906 -3.3226 36 1 1.8641 -5.5214 -2.8738 37 1 0.5766 -4.5471 -1.9822 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042549577.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:14 Heat of formation + Delta-G solvation = 75.627718 kcal Electronic energy + Delta-G solvation = -19652.740014 eV Core-core repulsion = 16781.198807 eV Total energy + Delta-G solvation = -2871.541207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.60223 -39.54551 -37.54639 -35.42508 -34.29427 -34.00856 -30.88295 -30.53459 -28.72906 -25.37206 -24.86598 -23.68811 -23.17366 -22.80518 -21.18789 -18.94738 -18.58197 -18.40471 -17.93667 -16.72087 -16.17000 -15.91095 -15.63818 -15.20744 -15.14559 -14.82009 -14.52978 -14.14292 -13.88531 -13.66319 -13.22762 -13.17130 -12.73605 -12.65461 -12.33697 -12.26500 -12.21542 -12.04072 -11.98017 -11.46640 -11.35606 -11.25221 -10.65833 -10.23339 -10.05941 -9.19654 -8.41593 -8.00452 -6.37359 -0.29783 0.17951 1.24366 1.36751 1.39679 1.50832 2.11565 2.20580 2.39712 3.05964 3.07868 3.39419 3.57345 3.87873 3.94537 4.03220 4.11817 4.14450 4.21828 4.25565 4.45469 4.52851 4.67790 4.75185 4.79140 4.96112 4.98736 5.08845 5.17630 5.18395 5.29651 5.30170 5.36017 5.59766 5.63277 5.68243 5.72736 6.01753 6.08277 6.20933 6.69067 6.74749 7.27987 7.40630 8.82673 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020157 B = 0.005717 C = 0.004780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1388.746060 B = 4896.266557 C = 5855.883441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.021 3.979 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.533 4.533 8 H 0.047 0.953 9 C 0.269 3.731 10 N -0.567 5.567 11 C 0.419 3.581 12 C -0.223 4.223 13 C -0.026 4.026 14 C -0.177 4.177 15 C -0.076 4.076 16 C -0.151 4.151 17 C -0.079 4.079 18 C -0.141 4.141 19 C 0.153 3.847 20 N -0.581 5.581 21 C 0.085 3.915 22 C -0.181 4.181 23 C -0.185 4.185 24 H 0.268 0.732 25 H 0.023 0.977 26 H 0.016 0.984 27 H 0.127 0.873 28 H 0.165 0.835 29 H 0.150 0.850 30 H 0.156 0.844 31 H 0.156 0.844 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.122 0.878 37 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.685 -11.680 6.492 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.179 4.179 3 Si 0.783 3.217 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.202 1.202 7 C -0.571 4.571 8 H 0.066 0.934 9 C 0.149 3.851 10 N -0.275 5.275 11 C 0.172 3.828 12 C -0.247 4.247 13 C -0.051 4.051 14 C -0.181 4.181 15 C -0.094 4.094 16 C -0.169 4.169 17 C -0.099 4.099 18 C -0.161 4.161 19 C 0.030 3.970 20 N -0.304 5.304 21 C -0.020 4.020 22 C -0.219 4.219 23 C -0.224 4.224 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.033 0.967 27 H 0.145 0.855 28 H 0.183 0.817 29 H 0.168 0.832 30 H 0.174 0.826 31 H 0.174 0.826 32 H 0.147 0.853 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.137 0.863 36 H 0.140 0.860 37 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 7.647 -11.904 5.576 15.207 hybrid contribution -0.335 1.756 0.318 1.816 sum 7.313 -10.147 5.894 13.827 Atomic orbital electron populations 1.70028 1.07224 1.28119 1.50780 1.25646 0.95545 1.02236 0.94446 0.85507 0.78693 0.79485 0.78003 1.19838 1.20185 1.20153 1.21603 0.92951 0.91337 1.51240 0.93426 1.18919 0.87030 0.82639 0.96550 1.46443 1.45528 1.33967 1.01574 1.18740 0.89065 0.88379 0.86601 1.21579 1.07204 1.03130 0.92741 1.21572 0.92143 0.93228 0.98152 1.18950 1.05204 0.98513 0.95477 1.21224 0.95849 0.95820 0.96524 1.21148 1.00456 0.96365 0.98955 1.21204 0.97333 0.99898 0.91428 1.20805 1.00285 0.94915 1.00087 1.19056 0.95093 0.95202 0.87608 1.67607 1.20058 1.12252 1.30460 1.21487 0.98623 1.01495 0.80376 1.23334 1.03905 0.95954 0.98693 1.23361 0.97054 0.98632 1.03333 0.92297 0.95906 0.96656 0.85491 0.81728 0.83199 0.82631 0.82628 0.85340 0.85750 0.89830 0.86332 0.85987 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.99 13.29 21.45 0.28 -51.71 16 2 C 0.02 1.14 5.46 84.65 0.46 1.61 16 3 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 7 C -0.53 -28.79 8.59 25.60 0.22 -28.57 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 9 C 0.27 13.76 4.02 85.64 0.34 14.11 16 10 N -0.57 -25.97 2.91 -684.01 -1.99 -27.96 16 11 C 0.42 18.65 7.34 133.65 0.98 19.64 16 12 C -0.22 -9.32 9.02 22.29 0.20 -9.11 16 13 C -0.03 -0.87 9.88 22.48 0.22 -0.65 16 14 C -0.18 -5.73 5.74 -21.26 -0.12 -5.86 16 15 C -0.08 -1.78 9.77 22.31 0.22 -1.57 16 16 C -0.15 -2.97 9.96 22.05 0.22 -2.75 16 17 C -0.08 -1.69 9.94 22.03 0.22 -1.47 16 18 C -0.14 -4.08 9.98 22.34 0.22 -3.86 16 19 C 0.15 5.56 6.60 40.23 0.27 5.83 16 20 N -0.58 -24.27 9.20 -186.22 -1.71 -25.98 16 21 C 0.09 3.40 6.25 44.99 0.28 3.68 16 22 C -0.18 -6.63 9.72 30.59 0.30 -6.33 16 23 C -0.18 -6.34 10.02 30.59 0.31 -6.03 16 24 H 0.27 14.24 8.31 -92.71 -0.77 13.46 16 25 H 0.02 1.24 6.24 -2.39 -0.01 1.22 16 26 H 0.02 0.84 6.57 -2.39 -0.02 0.83 16 27 H 0.13 5.76 6.14 -2.91 -0.02 5.75 16 28 H 0.17 4.20 8.06 -2.91 -0.02 4.18 16 29 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 30 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 31 H 0.16 2.16 8.06 -2.91 -0.02 2.13 16 32 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 33 H 0.12 4.81 7.60 -2.39 -0.02 4.79 16 34 H 0.08 3.65 6.29 -2.39 -0.02 3.63 16 35 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 36 H 0.12 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.08 2.84 7.82 -2.39 -0.02 2.82 16 Total: -1.00 -64.00 311.90 4.02 -59.98 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 1.07 Total: 22.04 kcal Atomic # 6 Polarization: -25.68 SS G_CDS: 4.34 Total: -21.34 kcal Atomic # 7 Polarization: -102.23 SS G_CDS: -3.42 Total: -105.65 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -64.00 4.02 -59.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042549577.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.607 kcal (2) G-P(sol) polarization free energy of solvation -63.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds