Wall clock time and date at job start Mon Mar 30 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00380 * 2 1 4 4 C 1.50699 * 109.46819 * 286.70980 * 3 2 1 5 5 H 1.07998 * 120.00825 * 359.72301 * 4 3 2 6 6 C 1.37881 * 119.99985 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99783 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00500 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47377 * 89.99583 * 8 6 4 10 10 H 1.48501 * 109.47539 * 210.00079 * 8 6 4 11 11 H 1.48507 * 109.46913 * 330.00152 * 8 6 4 12 12 C 1.46893 * 111.00221 * 123.95834 * 2 1 3 13 13 H 1.09003 * 109.47489 * 199.43144 * 12 2 1 14 14 C 1.53001 * 109.47166 * 319.42894 * 12 2 1 15 15 N 1.46892 * 109.47362 * 302.61106 * 14 12 2 16 16 C 1.50700 * 109.47501 * 79.43286 * 12 2 1 17 17 C 1.38238 * 119.98505 * 347.61246 * 16 12 2 18 18 C 1.38217 * 120.01738 * 179.72832 * 17 16 12 19 19 C 1.38358 * 119.98196 * 0.54759 * 18 17 16 20 20 Cl 1.73594 * 120.01253 * 179.74799 * 19 18 17 21 21 C 1.38349 * 119.97232 * 359.72997 * 19 18 17 22 22 C 1.38218 * 119.98765 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.47088 * 70.14930 * 1 2 3 24 24 H 1.09003 * 109.46946 * 190.15140 * 1 2 3 25 25 H 1.09001 * 109.46755 * 310.15295 * 1 2 3 26 26 H 1.08995 * 109.47567 * 166.70949 * 3 2 1 27 27 H 1.09002 * 109.46711 * 46.70564 * 3 2 1 28 28 H 0.97002 * 119.99886 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.46865 * 62.60970 * 14 12 2 30 30 H 1.08995 * 109.47393 * 182.60382 * 14 12 2 31 31 H 1.00903 * 111.00748 * 179.97438 * 15 14 12 32 32 H 1.00901 * 110.99990 * 303.95039 * 15 14 12 33 33 H 1.08007 * 119.99684 * 0.02562 * 17 16 12 34 34 H 1.07999 * 120.01336 * 180.27402 * 18 17 16 35 35 H 1.07998 * 120.00655 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99321 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7942 1.9867 -1.3608 5 1 1.3264 1.4147 -2.1484 6 6 2.2119 3.2784 -1.6021 7 7 2.7857 3.9736 -0.6443 8 14 1.9618 4.0415 -3.2886 9 1 0.6435 4.7238 -3.3326 10 1 3.0394 5.0292 -3.5498 11 1 2.0034 2.9779 -4.3242 12 6 1.9955 -0.7660 1.1375 13 1 3.0305 -0.4779 1.3217 14 6 1.1553 -0.4732 2.3822 15 7 1.1661 0.9708 2.6517 16 6 1.9323 -2.2387 0.8238 17 6 1.2057 -2.6825 -0.2653 18 6 1.1519 -4.0325 -0.5568 19 6 1.8162 -4.9408 0.2482 20 17 1.7438 -6.6371 -0.1135 21 6 2.5385 -4.4964 1.3413 22 6 2.5966 -3.1456 1.6282 23 1 -0.3633 0.3490 -0.9666 24 1 -0.3633 -1.0116 0.1811 25 1 -0.3633 0.6627 0.7855 26 1 3.0594 1.3522 0.2362 27 1 1.4678 1.9631 0.7480 28 1 3.0799 4.8822 -0.8141 29 1 0.1302 -0.8039 2.2147 30 1 1.5737 -1.0054 3.2364 31 1 0.6174 1.1902 3.4695 32 1 2.1102 1.3138 2.7467 33 1 0.6838 -1.9739 -0.8913 34 1 0.5878 -4.3788 -1.4102 35 1 3.0570 -5.2049 1.9703 36 1 3.1607 -2.7986 2.4813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042944639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:57 Heat of formation + Delta-G solvation = 34.643246 kcal Electronic energy + Delta-G solvation = -18359.062176 eV Core-core repulsion = 15483.310899 eV Total energy + Delta-G solvation = -2875.751277 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.68736 -37.47128 -36.23422 -33.32522 -32.28892 -31.19197 -30.74049 -27.31461 -26.87994 -24.58870 -22.82760 -22.29683 -21.12054 -19.38967 -17.13922 -16.23556 -15.87596 -15.40662 -14.99400 -14.62144 -14.57729 -14.18593 -13.64658 -13.38212 -13.19240 -13.05671 -12.44749 -12.04904 -11.84556 -11.59049 -11.44766 -11.11623 -10.99345 -10.90104 -10.76640 -10.56477 -10.44097 -10.24351 -9.72976 -9.12683 -8.88734 -8.45956 -8.37534 -8.29107 -6.97223 -5.91236 -3.90153 1.28126 1.44663 2.17564 3.37225 3.43377 3.47733 3.77082 4.49664 4.72481 4.81793 4.98192 5.05293 5.29941 5.43132 5.46361 5.49713 5.58751 5.67590 5.78326 5.87546 6.06665 6.12604 6.24222 6.32458 6.44530 6.62425 6.82183 6.87757 6.98301 7.35495 7.44649 7.70235 7.80393 7.92652 8.21370 8.36466 8.68848 9.17951 9.72122 11.18859 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.004596 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.310409 B = 6091.224445 C = 6800.661829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.523 5.523 3 C 0.188 3.812 4 C -0.501 4.501 5 H 0.058 0.942 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.115 3.885 13 H 0.084 0.916 14 C 0.043 3.957 15 N -0.834 5.834 16 C -0.054 4.054 17 C -0.083 4.083 18 C -0.116 4.116 19 C -0.044 4.044 20 Cl -0.087 7.087 21 C -0.116 4.116 22 C -0.111 4.111 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.015 0.985 27 H 0.037 0.963 28 H 0.258 0.742 29 H 0.072 0.928 30 H 0.017 0.983 31 H 0.333 0.667 32 H 0.346 0.654 33 H 0.153 0.847 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.591 -15.175 6.705 16.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.246 5.246 3 C 0.063 3.937 4 C -0.540 4.540 5 H 0.076 0.924 6 C -0.146 4.146 7 N -0.540 5.540 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.215 1.215 11 H -0.200 1.200 12 C 0.004 3.996 13 H 0.102 0.898 14 C -0.090 4.090 15 N -0.364 5.364 16 C -0.055 4.055 17 C -0.101 4.101 18 C -0.135 4.135 19 C -0.070 4.070 20 Cl -0.058 7.058 21 C -0.135 4.135 22 C -0.130 4.130 23 H 0.080 0.920 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.033 0.967 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.036 0.964 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.707 -15.288 5.550 16.488 hybrid contribution 0.220 0.430 0.685 0.838 sum -2.487 -14.859 6.235 16.305 Atomic orbital electron populations 1.22400 0.89311 0.98605 1.01694 1.62358 1.06857 1.18662 1.36731 1.19970 0.94527 0.81755 0.97460 1.21238 1.38090 0.97391 0.97236 0.92409 1.24924 0.95724 0.97209 0.96747 1.69956 1.41475 1.10441 1.32163 0.86596 0.77548 0.78990 0.84812 1.20918 1.21478 1.19985 1.20664 0.99117 0.89506 0.90266 0.89825 1.22436 1.00998 0.88989 0.96534 1.58793 1.19148 1.13393 1.45079 1.20099 0.95376 0.95500 0.94519 1.21457 0.97585 0.94229 0.96807 1.21134 0.99975 0.92887 0.99468 1.20895 1.03132 0.84231 0.98737 1.98342 1.97623 1.15263 1.94605 1.20883 0.99818 0.96044 0.96746 1.20917 1.00109 0.92009 0.99915 0.91957 0.94076 0.94262 0.96706 0.94491 0.93262 0.90941 0.96449 0.85517 0.84075 0.83002 0.85350 0.85539 0.85662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 6.81 60.06 0.41 0.93 16 2 N -0.52 -10.54 3.82 -237.73 -0.91 -11.45 16 3 C 0.19 4.65 3.94 -4.98 -0.02 4.63 16 4 C -0.50 -13.93 8.76 -34.44 -0.30 -14.23 16 5 H 0.06 1.61 7.61 -52.49 -0.40 1.21 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 8 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 C 0.11 1.91 2.34 -68.87 -0.16 1.74 16 13 H 0.08 1.47 7.56 -51.93 -0.39 1.08 16 14 C 0.04 0.62 5.41 -3.83 -0.02 0.60 16 15 N -0.83 -12.80 6.18 -10.37 -0.06 -12.86 16 16 C -0.05 -0.80 5.09 -104.62 -0.53 -1.33 16 17 C -0.08 -1.23 8.22 -39.59 -0.33 -1.56 16 18 C -0.12 -1.55 9.83 -39.54 -0.39 -1.93 16 19 C -0.04 -0.56 6.32 -39.50 -0.25 -0.81 16 20 Cl -0.09 -1.01 28.96 -51.86 -1.50 -2.51 16 21 C -0.12 -1.41 9.83 -39.55 -0.39 -1.80 16 22 C -0.11 -1.42 9.57 -39.59 -0.38 -1.80 16 23 H 0.06 1.23 7.67 -51.93 -0.40 0.84 16 24 H 0.04 0.65 5.46 -51.93 -0.28 0.37 16 25 H 0.04 0.76 6.34 -51.93 -0.33 0.43 16 26 H 0.01 0.40 7.62 -51.93 -0.40 0.00 16 27 H 0.04 0.96 5.89 -51.93 -0.31 0.66 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.07 1.06 6.58 -51.92 -0.34 0.72 16 30 H 0.02 0.22 8.09 -51.93 -0.42 -0.20 16 31 H 0.33 4.27 9.08 -39.29 -0.36 3.91 16 32 H 0.35 5.45 8.70 -39.29 -0.34 5.11 16 33 H 0.15 2.42 5.27 -52.48 -0.28 2.15 16 34 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 36 H 0.13 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 303.02 15.07 4.57 4.57 Total: -1.00 -29.26 303.02 -9.29 -38.55 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -4.64 Total: 6.75 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -2.46 Total: -14.11 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.24 Total: -50.02 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.26 -9.29 -38.55 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042944639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.196 kcal (2) G-P(sol) polarization free energy of solvation -29.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds