Wall clock time and date at job start Mon Mar 30 2020 06:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 111.00380 * 2 1 4 4 C 1.50699 * 109.46819 * 286.70980 * 3 2 1 5 5 H 1.07998 * 120.00825 * 359.72301 * 4 3 2 6 6 C 1.37881 * 119.99985 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99783 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00500 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47377 * 89.99583 * 8 6 4 10 10 H 1.48501 * 109.47539 * 210.00079 * 8 6 4 11 11 H 1.48507 * 109.46913 * 330.00152 * 8 6 4 12 12 C 1.46893 * 111.00221 * 123.95834 * 2 1 3 13 13 H 1.09003 * 109.47489 * 199.43144 * 12 2 1 14 14 C 1.53001 * 109.47166 * 319.42894 * 12 2 1 15 15 N 1.46892 * 109.47362 * 302.61106 * 14 12 2 16 16 C 1.50700 * 109.47501 * 79.43286 * 12 2 1 17 17 C 1.38238 * 119.98505 * 347.61246 * 16 12 2 18 18 C 1.38217 * 120.01738 * 179.72832 * 17 16 12 19 19 C 1.38358 * 119.98196 * 0.54759 * 18 17 16 20 20 Cl 1.73594 * 120.01253 * 179.74799 * 19 18 17 21 21 C 1.38349 * 119.97232 * 359.72997 * 19 18 17 22 22 C 1.38218 * 119.98765 * 359.97438 * 21 19 18 23 23 H 1.09003 * 109.47088 * 70.14930 * 1 2 3 24 24 H 1.09003 * 109.46946 * 190.15140 * 1 2 3 25 25 H 1.09001 * 109.46755 * 310.15295 * 1 2 3 26 26 H 1.08995 * 109.47567 * 166.70949 * 3 2 1 27 27 H 1.09002 * 109.46711 * 46.70564 * 3 2 1 28 28 H 0.97002 * 119.99886 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.46865 * 62.60970 * 14 12 2 30 30 H 1.08995 * 109.47393 * 182.60382 * 14 12 2 31 31 H 1.00903 * 111.00748 * 179.97438 * 15 14 12 32 32 H 1.00901 * 110.99990 * 303.95039 * 15 14 12 33 33 H 1.08007 * 119.99684 * 0.02562 * 17 16 12 34 34 H 1.07999 * 120.01336 * 180.27402 * 18 17 16 35 35 H 1.07998 * 120.00655 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99321 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7942 1.9867 -1.3608 5 1 1.3264 1.4147 -2.1484 6 6 2.2119 3.2784 -1.6021 7 7 2.7857 3.9736 -0.6443 8 14 1.9618 4.0415 -3.2886 9 1 0.6435 4.7238 -3.3326 10 1 3.0394 5.0292 -3.5498 11 1 2.0034 2.9779 -4.3242 12 6 1.9955 -0.7660 1.1375 13 1 3.0305 -0.4779 1.3217 14 6 1.1553 -0.4732 2.3822 15 7 1.1661 0.9708 2.6517 16 6 1.9323 -2.2387 0.8238 17 6 1.2057 -2.6825 -0.2653 18 6 1.1519 -4.0325 -0.5568 19 6 1.8162 -4.9408 0.2482 20 17 1.7438 -6.6371 -0.1135 21 6 2.5385 -4.4964 1.3413 22 6 2.5966 -3.1456 1.6282 23 1 -0.3633 0.3490 -0.9666 24 1 -0.3633 -1.0116 0.1811 25 1 -0.3633 0.6627 0.7855 26 1 3.0594 1.3522 0.2362 27 1 1.4678 1.9631 0.7480 28 1 3.0799 4.8822 -0.8141 29 1 0.1302 -0.8039 2.2147 30 1 1.5737 -1.0054 3.2364 31 1 0.6174 1.1902 3.4695 32 1 2.1102 1.3138 2.7467 33 1 0.6838 -1.9739 -0.8913 34 1 0.5878 -4.3788 -1.4102 35 1 3.0570 -5.2049 1.9703 36 1 3.1607 -2.7986 2.4813 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042944639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:57 Heat of formation + Delta-G solvation = 16.123791 kcal Electronic energy + Delta-G solvation = -18359.865240 eV Core-core repulsion = 15483.310899 eV Total energy + Delta-G solvation = -2876.554340 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.85786 -38.74408 -37.25249 -35.07885 -33.94351 -32.39360 -31.88736 -29.11271 -28.23182 -26.29867 -24.08649 -23.40807 -22.68544 -20.75608 -18.55296 -17.93370 -17.18763 -16.68620 -16.46703 -16.19228 -15.85873 -15.51606 -14.91293 -14.65408 -14.35305 -14.21330 -14.04900 -13.71281 -13.33121 -12.89172 -12.74257 -12.69056 -12.63618 -12.22618 -12.21611 -12.09272 -11.98369 -11.67594 -11.52959 -11.09971 -10.47636 -9.91678 -9.68129 -9.43871 -8.58151 -8.05802 -6.13641 0.22803 0.42284 1.20005 1.43534 1.43986 1.54911 2.47114 2.71336 3.24521 3.44185 3.56154 3.96022 4.03774 4.05179 4.28074 4.35088 4.48448 4.55702 4.56793 4.72368 4.82299 4.92039 5.02936 5.13321 5.26217 5.30667 5.37786 5.47855 5.67759 5.74498 5.86381 5.91749 6.21696 6.30194 6.54202 6.61897 6.84120 7.05580 7.53542 9.01835 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.025167 B = 0.004596 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.310409 B = 6091.224445 C = 6800.661829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.531 5.531 3 C 0.207 3.793 4 C -0.519 4.519 5 H 0.051 0.949 6 C 0.004 3.996 7 N -0.930 5.930 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.271 1.271 12 C 0.117 3.883 13 H 0.069 0.931 14 C 0.052 3.948 15 N -0.852 5.852 16 C -0.068 4.068 17 C -0.098 4.098 18 C -0.118 4.118 19 C -0.048 4.048 20 Cl -0.074 7.074 21 C -0.111 4.111 22 C -0.107 4.107 23 H 0.043 0.957 24 H 0.070 0.930 25 H 0.031 0.969 26 H -0.015 1.015 27 H 0.024 0.976 28 H 0.260 0.740 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.347 0.653 32 H 0.341 0.659 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.152 0.848 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.816 -16.800 6.952 18.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.254 5.254 3 C 0.081 3.919 4 C -0.557 4.557 5 H 0.069 0.931 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.782 3.218 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.007 3.993 13 H 0.087 0.913 14 C -0.080 4.080 15 N -0.383 5.383 16 C -0.069 4.069 17 C -0.117 4.117 18 C -0.136 4.136 19 C -0.074 4.074 20 Cl -0.046 7.046 21 C -0.129 4.129 22 C -0.125 4.125 23 H 0.062 0.938 24 H 0.088 0.912 25 H 0.049 0.951 26 H 0.003 0.997 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.160 0.840 32 H 0.154 0.846 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.170 0.830 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.949 -16.938 5.806 18.147 hybrid contribution 0.302 0.824 0.637 1.084 sum -2.647 -16.114 6.443 17.555 Atomic orbital electron populations 1.22299 0.88294 1.00051 1.00287 1.62169 1.07732 1.16165 1.39362 1.19557 0.92611 0.84089 0.95618 1.21604 1.37874 0.97843 0.98413 0.93107 1.25718 0.95459 0.97755 1.00398 1.70070 1.42292 1.10737 1.34054 0.85584 0.77687 0.78096 0.80407 1.20131 1.21024 1.19535 1.20641 0.98410 0.90241 0.90034 0.91339 1.22320 1.00648 0.88714 0.96329 1.58737 1.19131 1.14234 1.46222 1.19976 0.96870 0.94495 0.95555 1.21344 0.98482 0.94807 0.97036 1.21228 1.00086 0.92323 0.99975 1.21038 1.02788 0.84873 0.98734 1.98350 1.97554 1.14098 1.94556 1.21172 0.99080 0.96153 0.96516 1.21095 0.99433 0.91970 1.00015 0.93826 0.91171 0.95091 0.99678 0.95819 0.93164 0.90850 0.93819 0.83952 0.84618 0.84607 0.84138 0.83036 0.83611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 6.81 127.69 0.87 2.32 16 2 N -0.53 -21.79 3.82 -906.05 -3.46 -25.26 16 3 C 0.21 10.61 3.94 85.56 0.34 10.94 16 4 C -0.52 -29.49 8.76 25.60 0.22 -29.26 16 5 H 0.05 2.89 7.61 -2.91 -0.02 2.87 16 6 C 0.00 0.24 5.46 84.65 0.46 0.70 16 7 N -0.93 -55.59 13.29 21.45 0.28 -55.30 16 8 Si 0.96 45.04 29.54 68.60 2.03 47.06 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.12 3.85 2.34 44.17 0.10 3.95 16 13 H 0.07 2.45 7.56 -2.39 -0.02 2.43 16 14 C 0.05 1.44 5.41 86.31 0.47 1.91 16 15 N -0.85 -26.08 6.18 -186.73 -1.15 -27.23 16 16 C -0.07 -1.93 5.09 -19.86 -0.10 -2.03 16 17 C -0.10 -2.85 8.22 22.26 0.18 -2.67 16 18 C -0.12 -2.94 9.83 22.29 0.22 -2.72 16 19 C -0.05 -1.11 6.32 22.32 0.14 -0.97 16 20 Cl -0.07 -1.53 28.96 -2.72 -0.08 -1.61 16 21 C -0.11 -2.35 9.83 22.29 0.22 -2.13 16 22 C -0.11 -2.46 9.57 22.26 0.21 -2.25 16 23 H 0.04 1.76 7.67 -2.39 -0.02 1.74 16 24 H 0.07 2.19 5.46 -2.39 -0.01 2.17 16 25 H 0.03 1.20 6.34 -2.39 -0.02 1.18 16 26 H -0.01 -0.84 7.62 -2.39 -0.02 -0.86 16 27 H 0.02 1.28 5.89 -2.39 -0.01 1.27 16 28 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 29 H 0.07 2.04 6.58 -2.38 -0.02 2.02 16 30 H 0.04 1.01 8.09 -2.39 -0.02 0.99 16 31 H 0.35 8.69 9.08 -89.69 -0.81 7.88 16 32 H 0.34 10.96 8.70 -89.69 -0.78 10.18 16 33 H 0.14 4.33 5.27 -2.91 -0.02 4.31 16 34 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 35 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 36 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -62.76 303.02 0.47 -62.29 By element: Atomic # 1 Polarization: 22.75 SS G_CDS: -0.48 Total: 22.26 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: 3.34 Total: -22.21 kcal Atomic # 7 Polarization: -103.46 SS G_CDS: -4.33 Total: -107.79 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -62.76 0.47 -62.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042944639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.409 kcal (2) G-P(sol) polarization free energy of solvation -62.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds