Wall clock time and date at job start Mon Mar 30 2020 06:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00040 * 2 1 4 4 C 1.50705 * 109.47180 * 72.35314 * 3 2 1 5 5 H 1.08000 * 119.99992 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99964 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00087 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99859 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46829 * 60.00412 * 8 6 4 10 10 H 1.48493 * 109.46921 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47063 * 300.00493 * 8 6 4 12 12 C 1.46901 * 110.99829 * 236.04529 * 2 1 3 13 13 H 1.09000 * 109.47118 * 154.26402 * 12 2 1 14 14 C 1.52999 * 109.47486 * 34.26082 * 12 2 1 15 15 N 1.46898 * 109.47089 * 63.24426 * 14 12 2 16 16 C 1.50699 * 109.47075 * 274.25903 * 12 2 1 17 17 C 1.38247 * 119.98753 * 197.37854 * 16 12 2 18 18 C 1.38214 * 120.01314 * 179.97438 * 17 16 12 19 19 C 1.38351 * 119.98963 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.01511 * 180.02562 * 19 18 17 21 21 C 1.38353 * 119.96997 * 0.02562 * 19 18 17 22 22 C 1.38210 * 119.99046 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.47460 * 178.68513 * 1 2 3 24 24 H 1.09000 * 109.47460 * 298.69151 * 1 2 3 25 25 H 1.09009 * 109.47008 * 58.69118 * 1 2 3 26 26 H 1.09005 * 109.47124 * 192.35098 * 3 2 1 27 27 H 1.08998 * 109.47307 * 312.35142 * 3 2 1 28 28 H 0.97003 * 120.00273 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47162 * 183.24821 * 14 12 2 30 30 H 1.08999 * 109.46843 * 303.24592 * 14 12 2 31 31 H 1.00899 * 111.00311 * 170.85772 * 15 14 12 32 32 H 1.00901 * 111.00110 * 294.81908 * 15 14 12 33 33 H 1.07998 * 119.98965 * 0.25512 * 17 16 12 34 34 H 1.07998 * 120.00385 * 180.02562 * 18 17 16 35 35 H 1.08010 * 120.00593 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99801 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7734 1.9947 1.3540 5 1 1.2892 1.4289 2.1361 6 6 2.1883 3.2874 1.5942 7 7 2.7775 3.9767 0.6417 8 14 1.9124 4.0603 3.2723 9 1 2.6147 3.2599 4.3074 10 1 2.4447 5.4466 3.2723 11 1 0.4580 4.0889 3.5710 12 6 1.9954 -0.7660 -1.1376 13 1 2.9899 -0.4000 -1.3930 14 6 1.0652 -0.5970 -2.3405 15 7 1.0465 0.8134 -2.7507 16 6 2.0769 -2.2243 -0.7666 17 6 2.8597 -3.0847 -1.5137 18 6 2.9353 -4.4222 -1.1735 19 6 2.2277 -4.8999 -0.0848 20 17 2.3227 -6.5796 0.3434 21 6 1.4445 -4.0384 0.6624 22 6 1.3689 -2.7013 0.3208 23 1 -0.3634 -1.0274 -0.0236 24 1 -0.3634 0.4934 0.9015 25 1 -0.3633 0.5341 -0.8781 26 1 3.0629 1.3508 -0.2198 27 1 1.4794 1.9587 -0.7594 28 1 3.0691 4.8863 0.8106 29 1 1.4243 -1.2109 -3.1665 30 1 0.0574 -0.9093 -2.0671 31 1 0.5613 0.9285 -3.6278 32 1 0.6384 1.3933 -2.0328 33 1 3.4159 -2.7107 -2.3605 34 1 3.5472 -5.0941 -1.7570 35 1 0.8915 -4.4108 1.5123 36 1 0.7578 -2.0286 0.9043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042944640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:01 Heat of formation + Delta-G solvation = 36.982944 kcal Electronic energy + Delta-G solvation = -18353.079377 eV Core-core repulsion = 15477.429558 eV Total energy + Delta-G solvation = -2875.649820 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.71358 -37.66401 -36.27121 -33.32175 -32.26082 -31.27471 -30.78697 -27.44376 -27.05926 -24.69556 -22.77979 -22.33517 -21.21476 -19.43844 -17.26912 -16.45341 -15.89886 -15.52046 -15.25454 -14.65934 -14.38658 -14.16509 -13.65914 -13.42747 -13.16506 -13.08128 -12.32851 -12.22800 -11.87877 -11.65688 -11.48523 -11.16663 -11.08495 -10.95985 -10.87899 -10.63334 -10.55813 -10.41459 -9.84906 -9.24652 -8.87559 -8.47847 -8.43259 -8.24936 -7.28122 -6.00531 -4.02506 1.29797 1.46164 2.18737 3.33322 3.38084 3.40681 3.78305 4.41058 4.70281 4.79776 4.99166 5.02227 5.26499 5.35501 5.44881 5.53243 5.59290 5.66649 5.76711 5.90950 5.94012 6.05896 6.09836 6.27140 6.36294 6.43632 6.60542 6.84270 6.98908 7.21911 7.29029 7.52605 7.76820 7.80263 8.07672 8.16835 8.52084 9.04823 9.61347 11.09086 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.004654 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.561148 B = 6014.551576 C = 6735.189730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.531 5.531 3 C 0.197 3.803 4 C -0.511 4.511 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.895 5.895 8 Si 0.895 3.105 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 C 0.116 3.884 13 H 0.095 0.905 14 C 0.043 3.957 15 N -0.849 5.849 16 C -0.052 4.052 17 C -0.109 4.109 18 C -0.115 4.115 19 C -0.044 4.044 20 Cl -0.087 7.087 21 C -0.116 4.116 22 C -0.084 4.084 23 H 0.050 0.950 24 H 0.074 0.926 25 H 0.013 0.987 26 H 0.029 0.971 27 H 0.008 0.992 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.031 0.969 31 H 0.331 0.669 32 H 0.353 0.647 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.597 -15.020 -5.131 16.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.254 5.254 3 C 0.072 3.928 4 C -0.549 4.549 5 H 0.079 0.921 6 C -0.145 4.145 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.204 1.204 12 C 0.006 3.994 13 H 0.113 0.887 14 C -0.089 4.089 15 N -0.384 5.384 16 C -0.054 4.054 17 C -0.128 4.128 18 C -0.134 4.134 19 C -0.070 4.070 20 Cl -0.059 7.059 21 C -0.135 4.135 22 C -0.102 4.102 23 H 0.069 0.931 24 H 0.092 0.908 25 H 0.031 0.969 26 H 0.047 0.953 27 H 0.026 0.974 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.143 0.857 32 H 0.173 0.827 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.561 -15.238 -4.696 16.150 hybrid contribution -1.296 0.634 0.273 1.468 sum -3.856 -14.605 -4.423 15.739 Atomic orbital electron populations 1.22498 0.89637 0.99323 1.00843 1.62227 1.06200 1.18569 1.38428 1.19866 0.95358 0.80919 0.96643 1.21157 1.38568 0.97540 0.97671 0.92119 1.24961 0.95390 0.97204 0.96903 1.69954 1.40291 1.10748 1.32451 0.86610 0.78373 0.78172 0.84513 1.20247 1.21420 1.20402 1.20712 0.99813 0.89543 0.89334 0.88725 1.22339 0.98398 0.90322 0.97884 1.58978 1.63932 1.07117 1.08411 1.20120 0.95083 0.95521 0.94628 1.20958 0.99307 0.92338 1.00154 1.20901 0.99966 0.95989 0.96544 1.20886 1.02524 0.84798 0.98821 1.98342 1.97620 1.16854 1.93044 1.21102 0.99212 0.93382 0.99778 1.21354 0.98616 0.93801 0.96430 0.93139 0.90755 0.96861 0.95273 0.97443 0.92921 0.91591 0.95104 0.85695 0.82701 0.85364 0.85481 0.85422 0.83459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 7.11 60.07 0.43 0.87 16 2 N -0.53 -10.47 3.77 -237.72 -0.90 -11.37 16 3 C 0.20 4.83 4.23 -4.98 -0.02 4.81 16 4 C -0.51 -13.83 8.62 -34.44 -0.30 -14.13 16 5 H 0.06 1.63 7.52 -52.49 -0.39 1.24 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.04 13.29 55.43 0.74 -25.31 16 8 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 9 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.12 1.97 2.36 -68.87 -0.16 1.80 16 13 H 0.09 1.78 7.46 -51.93 -0.39 1.40 16 14 C 0.04 0.64 5.54 -3.83 -0.02 0.62 16 15 N -0.85 -13.60 9.03 -10.37 -0.09 -13.69 16 16 C -0.05 -0.78 5.11 -104.62 -0.53 -1.32 16 17 C -0.11 -1.43 9.67 -39.59 -0.38 -1.81 16 18 C -0.12 -1.42 9.83 -39.55 -0.39 -1.81 16 19 C -0.04 -0.57 6.32 -39.50 -0.25 -0.82 16 20 Cl -0.09 -1.02 28.96 -51.86 -1.50 -2.52 16 21 C -0.12 -1.54 9.83 -39.55 -0.39 -1.93 16 22 C -0.08 -1.24 8.55 -39.59 -0.34 -1.58 16 23 H 0.05 0.75 5.73 -51.93 -0.30 0.46 16 24 H 0.07 1.39 7.34 -51.93 -0.38 1.01 16 25 H 0.01 0.22 5.03 -51.92 -0.26 -0.04 16 26 H 0.03 0.80 7.61 -51.93 -0.39 0.40 16 27 H 0.01 0.20 5.45 -51.93 -0.28 -0.08 16 28 H 0.26 7.25 8.31 -40.82 -0.34 6.92 16 29 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 30 H 0.03 0.45 6.19 -51.93 -0.32 0.12 16 31 H 0.33 4.38 9.08 -39.29 -0.36 4.03 16 32 H 0.35 6.37 4.38 -39.29 -0.17 6.20 16 33 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 35 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 36 H 0.15 2.28 5.24 -52.49 -0.28 2.00 16 LS Contribution 300.15 15.07 4.52 4.52 Total: -1.00 -28.42 300.15 -9.06 -37.48 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -4.35 Total: 8.40 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -2.45 Total: -13.81 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -0.25 Total: -50.37 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.42 -9.06 -37.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042944640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.463 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.480 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds