Wall clock time and date at job start Mon Mar 30 2020 06:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46893 * 111.00040 * 2 1 4 4 C 1.50705 * 109.47180 * 72.35314 * 3 2 1 5 5 H 1.08000 * 119.99992 * 359.97438 * 4 3 2 6 6 C 1.37877 * 119.99964 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00087 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99859 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46829 * 60.00412 * 8 6 4 10 10 H 1.48493 * 109.46921 * 180.02562 * 8 6 4 11 11 H 1.48499 * 109.47063 * 300.00493 * 8 6 4 12 12 C 1.46901 * 110.99829 * 236.04529 * 2 1 3 13 13 H 1.09000 * 109.47118 * 154.26402 * 12 2 1 14 14 C 1.52999 * 109.47486 * 34.26082 * 12 2 1 15 15 N 1.46898 * 109.47089 * 63.24426 * 14 12 2 16 16 C 1.50699 * 109.47075 * 274.25903 * 12 2 1 17 17 C 1.38247 * 119.98753 * 197.37854 * 16 12 2 18 18 C 1.38214 * 120.01314 * 179.97438 * 17 16 12 19 19 C 1.38351 * 119.98963 * 359.97438 * 18 17 16 20 20 Cl 1.73602 * 120.01511 * 180.02562 * 19 18 17 21 21 C 1.38353 * 119.96997 * 0.02562 * 19 18 17 22 22 C 1.38210 * 119.99046 * 0.02562 * 21 19 18 23 23 H 1.09002 * 109.47460 * 178.68513 * 1 2 3 24 24 H 1.09000 * 109.47460 * 298.69151 * 1 2 3 25 25 H 1.09009 * 109.47008 * 58.69118 * 1 2 3 26 26 H 1.09005 * 109.47124 * 192.35098 * 3 2 1 27 27 H 1.08998 * 109.47307 * 312.35142 * 3 2 1 28 28 H 0.97003 * 120.00273 * 179.97438 * 7 6 4 29 29 H 1.08995 * 109.47162 * 183.24821 * 14 12 2 30 30 H 1.08999 * 109.46843 * 303.24592 * 14 12 2 31 31 H 1.00899 * 111.00311 * 170.85772 * 15 14 12 32 32 H 1.00901 * 111.00110 * 294.81908 * 15 14 12 33 33 H 1.07998 * 119.98965 * 0.25512 * 17 16 12 34 34 H 1.07998 * 120.00385 * 180.02562 * 18 17 16 35 35 H 1.08010 * 120.00593 * 179.97438 * 21 19 18 36 36 H 1.07997 * 119.99801 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7734 1.9947 1.3540 5 1 1.2892 1.4289 2.1361 6 6 2.1883 3.2874 1.5942 7 7 2.7775 3.9767 0.6417 8 14 1.9124 4.0603 3.2723 9 1 2.6147 3.2599 4.3074 10 1 2.4447 5.4466 3.2723 11 1 0.4580 4.0889 3.5710 12 6 1.9954 -0.7660 -1.1376 13 1 2.9899 -0.4000 -1.3930 14 6 1.0652 -0.5970 -2.3405 15 7 1.0465 0.8134 -2.7507 16 6 2.0769 -2.2243 -0.7666 17 6 2.8597 -3.0847 -1.5137 18 6 2.9353 -4.4222 -1.1735 19 6 2.2277 -4.8999 -0.0848 20 17 2.3227 -6.5796 0.3434 21 6 1.4445 -4.0384 0.6624 22 6 1.3689 -2.7013 0.3208 23 1 -0.3634 -1.0274 -0.0236 24 1 -0.3634 0.4934 0.9015 25 1 -0.3633 0.5341 -0.8781 26 1 3.0629 1.3508 -0.2198 27 1 1.4794 1.9587 -0.7594 28 1 3.0691 4.8863 0.8106 29 1 1.4243 -1.2109 -3.1665 30 1 0.0574 -0.9093 -2.0671 31 1 0.5613 0.9285 -3.6278 32 1 0.6384 1.3933 -2.0328 33 1 3.4159 -2.7107 -2.3605 34 1 3.5472 -5.0941 -1.7570 35 1 0.8915 -4.4108 1.5123 36 1 0.7578 -2.0286 0.9043 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042944640.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:00 Heat of formation + Delta-G solvation = 18.938298 kcal Electronic energy + Delta-G solvation = -18353.861852 eV Core-core repulsion = 15477.429558 eV Total energy + Delta-G solvation = -2876.432294 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.91312 -38.93670 -37.28016 -35.12571 -33.86425 -32.50896 -31.90426 -29.23140 -28.36888 -26.39430 -24.03991 -23.46331 -22.77446 -20.78938 -18.74079 -17.94359 -17.37611 -16.92822 -16.49270 -16.37769 -15.65635 -15.45679 -14.99131 -14.57278 -14.45948 -14.26130 -14.07887 -13.65517 -13.27188 -12.96218 -12.89740 -12.77212 -12.57988 -12.38072 -12.24925 -12.10203 -12.08401 -11.76221 -11.59413 -11.17894 -10.54282 -9.90726 -9.67229 -9.40598 -8.88562 -8.12206 -6.22025 0.23133 0.42784 1.20214 1.43374 1.45622 1.53232 2.43771 2.71195 3.18614 3.30522 3.51843 3.95414 4.03817 4.04474 4.18588 4.36430 4.46418 4.50549 4.54523 4.68393 4.70698 4.81230 4.89836 5.05595 5.14902 5.31474 5.33155 5.37793 5.42332 5.67664 5.76347 5.91914 6.14962 6.19897 6.41157 6.53645 6.68754 6.94822 7.46841 8.96534 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.023732 B = 0.004654 C = 0.004156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.561148 B = 6014.551576 C = 6735.189730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.537 5.537 3 C 0.215 3.785 4 C -0.524 4.524 5 H 0.059 0.941 6 C 0.005 3.995 7 N -0.930 5.930 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.119 3.881 13 H 0.068 0.932 14 C 0.049 3.951 15 N -0.862 5.862 16 C -0.067 4.067 17 C -0.108 4.108 18 C -0.110 4.110 19 C -0.048 4.048 20 Cl -0.074 7.074 21 C -0.117 4.117 22 C -0.097 4.097 23 H 0.079 0.921 24 H 0.057 0.943 25 H 0.018 0.982 26 H -0.010 1.010 27 H -0.004 1.004 28 H 0.262 0.738 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.347 0.653 32 H 0.340 0.660 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.152 -16.726 -5.030 17.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.260 5.260 3 C 0.089 3.911 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.193 4.193 7 N -0.571 5.571 8 Si 0.787 3.213 9 H -0.199 1.199 10 H -0.211 1.211 11 H -0.193 1.193 12 C 0.009 3.991 13 H 0.086 0.914 14 C -0.083 4.083 15 N -0.398 5.398 16 C -0.068 4.068 17 C -0.126 4.126 18 C -0.129 4.129 19 C -0.074 4.074 20 Cl -0.045 7.045 21 C -0.135 4.135 22 C -0.115 4.115 23 H 0.097 0.903 24 H 0.076 0.924 25 H 0.037 0.963 26 H 0.008 0.992 27 H 0.014 0.986 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.162 0.838 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.130 -16.978 -4.612 17.869 hybrid contribution -1.098 1.049 0.203 1.532 sum -4.229 -15.929 -4.409 17.061 Atomic orbital electron populations 1.22476 0.88088 1.00973 1.00224 1.62078 1.07597 1.15858 1.40479 1.19449 0.92998 0.83445 0.95199 1.21515 1.38138 0.97894 0.98677 0.92289 1.25795 0.95111 0.97812 1.00575 1.70083 1.41410 1.11041 1.34524 0.85563 0.78731 0.77123 0.79916 1.19873 1.21145 1.19251 1.20646 0.98738 0.90368 0.89300 0.91375 1.22303 0.98359 0.89904 0.97686 1.58938 1.64337 1.07658 1.08830 1.19981 0.96695 0.94398 0.95737 1.21114 0.98696 0.92494 1.00307 1.21166 0.99526 0.95890 0.96301 1.21034 1.02150 0.85480 0.98780 1.98350 1.97540 1.15686 1.92962 1.21224 0.99297 0.92802 1.00219 1.21280 0.99194 0.94469 0.96537 0.90302 0.92421 0.96330 0.99164 0.98617 0.92932 0.89489 0.94138 0.83923 0.84186 0.83793 0.83083 0.83994 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.06 7.11 127.69 0.91 1.97 16 2 N -0.54 -21.55 3.77 -906.02 -3.41 -24.97 16 3 C 0.22 10.95 4.23 85.56 0.36 11.32 16 4 C -0.52 -28.98 8.62 25.60 0.22 -28.76 16 5 H 0.06 3.21 7.52 -2.91 -0.02 3.19 16 6 C 0.01 0.30 5.46 84.66 0.46 0.76 16 7 N -0.93 -55.34 13.29 21.45 0.28 -55.06 16 8 Si 0.96 44.01 29.54 68.60 2.03 46.04 16 9 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 10 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 12 C 0.12 4.05 2.36 44.17 0.10 4.15 16 13 H 0.07 2.66 7.46 -2.39 -0.02 2.64 16 14 C 0.05 1.42 5.54 86.30 0.48 1.90 16 15 N -0.86 -27.51 9.03 -186.73 -1.69 -29.20 16 16 C -0.07 -1.94 5.11 -19.86 -0.10 -2.04 16 17 C -0.11 -2.61 9.67 22.27 0.22 -2.39 16 18 C -0.11 -2.42 9.83 22.29 0.22 -2.20 16 19 C -0.05 -1.12 6.32 22.32 0.14 -0.98 16 20 Cl -0.07 -1.54 28.96 -2.72 -0.08 -1.62 16 21 C -0.12 -2.89 9.83 22.29 0.22 -2.67 16 22 C -0.10 -2.75 8.55 22.26 0.19 -2.56 16 23 H 0.08 2.27 5.73 -2.39 -0.01 2.26 16 24 H 0.06 2.17 7.34 -2.39 -0.02 2.16 16 25 H 0.02 0.62 5.03 -2.38 -0.01 0.61 16 26 H -0.01 -0.57 7.61 -2.38 -0.02 -0.59 16 27 H 0.00 -0.19 5.45 -2.39 -0.01 -0.21 16 28 H 0.26 14.81 8.31 -92.71 -0.77 14.03 16 29 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 30 H 0.04 1.10 6.19 -2.39 -0.01 1.08 16 31 H 0.35 8.91 9.08 -89.69 -0.81 8.10 16 32 H 0.34 12.49 4.38 -89.69 -0.39 12.10 16 33 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 34 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.14 3.02 8.06 -2.91 -0.02 2.99 16 36 H 0.14 4.13 5.24 -2.91 -0.02 4.12 16 Total: -1.00 -61.43 300.15 0.46 -60.97 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: -0.09 Total: 25.35 kcal Atomic # 6 Polarization: -24.94 SS G_CDS: 3.42 Total: -21.52 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -4.81 Total: -109.22 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -0.08 Total: -1.62 kcal Total: -61.43 0.46 -60.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042944640.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.908 kcal (2) G-P(sol) polarization free energy of solvation -61.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds