Wall clock time and date at job start Mon Mar 30 2020 06:54:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 110.99795 * 2 1 4 4 C 1.50694 * 109.47244 * 297.72980 * 3 2 1 5 5 H 1.08003 * 119.99936 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00508 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99898 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00276 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47215 * 90.00015 * 8 6 4 10 10 H 1.48499 * 109.47047 * 209.99907 * 8 6 4 11 11 H 1.48505 * 109.47173 * 329.99787 * 8 6 4 12 12 C 1.46903 * 110.99910 * 123.94917 * 2 1 3 13 13 H 1.09003 * 109.47074 * 211.27054 * 12 2 1 14 14 C 1.53002 * 109.47332 * 331.27675 * 12 2 1 15 15 N 1.46904 * 109.46986 * 302.26431 * 14 12 2 16 16 C 1.50696 * 109.46991 * 91.27325 * 12 2 1 17 17 C 1.38264 * 119.99516 * 134.55554 * 16 12 2 18 18 C 1.38211 * 120.03113 * 180.02562 * 17 16 12 19 19 C 1.38235 * 120.01516 * 0.02562 * 18 17 16 20 20 C 1.38329 * 119.98174 * 359.97219 * 19 18 17 21 21 Cl 1.73606 * 120.01294 * 180.02562 * 20 19 18 22 22 C 1.38190 * 119.99524 * 314.53728 * 16 12 2 23 23 H 1.08997 * 109.47149 * 292.29368 * 1 2 3 24 24 H 1.09001 * 109.47068 * 52.29935 * 1 2 3 25 25 H 1.09004 * 109.46594 * 172.29734 * 1 2 3 26 26 H 1.08999 * 109.47337 * 57.72647 * 3 2 1 27 27 H 1.09007 * 109.47392 * 177.72822 * 3 2 1 28 28 H 0.96998 * 120.00681 * 180.02562 * 7 6 4 29 29 H 1.08994 * 109.47211 * 62.26095 * 14 12 2 30 30 H 1.09001 * 109.46887 * 182.26473 * 14 12 2 31 31 H 1.00892 * 111.00131 * 180.02562 * 15 14 12 32 32 H 1.00904 * 110.99502 * 303.95512 * 15 14 12 33 33 H 1.08004 * 119.98758 * 359.72388 * 17 16 12 34 34 H 1.08004 * 119.99711 * 179.97438 * 18 17 16 35 35 H 1.08004 * 120.01295 * 179.97438 * 19 18 17 36 36 H 1.07999 * 120.00682 * 0.02562 * 22 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.5582 2.0773 -1.2576 5 1 0.9505 1.5588 -1.9844 6 6 1.9349 3.3847 -1.4809 7 7 2.6754 4.0159 -0.5961 8 14 1.3924 4.2598 -3.0395 9 1 0.0923 4.9363 -2.8003 10 1 2.4126 5.2691 -3.4212 11 1 1.2410 3.2698 -4.1360 12 6 1.9954 -0.7659 1.1377 13 1 2.9457 -0.3370 1.4559 14 6 0.9972 -0.7099 2.2959 15 7 0.7517 0.6910 2.6633 16 6 2.2049 -2.1998 0.7240 17 6 3.3754 -2.8530 1.0629 18 6 3.5686 -4.1679 0.6835 19 6 2.5916 -4.8307 -0.0357 20 6 1.4203 -4.1777 -0.3750 21 17 0.1925 -5.0095 -1.2776 22 6 1.2269 -2.8617 0.0064 23 1 -0.3633 0.3898 0.9508 24 1 -0.3633 0.6285 -0.8131 25 1 -0.3633 -1.0185 -0.1377 26 1 1.6133 1.9073 0.8689 27 1 3.0843 1.3427 0.0407 28 1 2.9402 4.9358 -0.7530 29 1 0.0600 -1.1751 1.9906 30 1 1.4056 -1.2443 3.1536 31 1 0.0954 0.7548 3.4270 32 1 1.6150 1.1624 2.8884 33 1 4.1413 -2.3340 1.6202 34 1 4.4833 -4.6775 0.9481 35 1 2.7427 -5.8581 -0.3325 36 1 0.3127 -2.3514 -0.2584 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042975131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:03 Heat of formation + Delta-G solvation = 18.879749 kcal Electronic energy + Delta-G solvation = -18451.685492 eV Core-core repulsion = 15575.250659 eV Total energy + Delta-G solvation = -2876.434833 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.82438 -38.77356 -37.29877 -35.18564 -33.85611 -32.56432 -31.66500 -29.15620 -28.29336 -26.44795 -23.88822 -23.52041 -22.74453 -20.76459 -18.51597 -17.97341 -17.12056 -16.73921 -16.56125 -16.35975 -15.91895 -15.42833 -15.18102 -14.63703 -14.39445 -14.23311 -13.85445 -13.76268 -13.31845 -12.86378 -12.81591 -12.63939 -12.43600 -12.32964 -12.26302 -12.03590 -11.90315 -11.80161 -11.51456 -11.04684 -10.52759 -9.78930 -9.72142 -9.56879 -8.54568 -8.10987 -6.17775 0.26388 0.40902 1.21019 1.41841 1.42416 1.53563 2.44830 2.71543 3.20975 3.48160 3.54727 3.92206 4.02653 4.08588 4.23559 4.30252 4.48008 4.52134 4.58555 4.73757 4.77187 4.95016 5.05200 5.13785 5.29714 5.37737 5.43702 5.53819 5.63779 5.69060 5.76863 5.92813 6.16620 6.25593 6.50152 6.59263 6.83592 7.00471 7.49615 8.98610 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020094 B = 0.005269 C = 0.004796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.085406 B = 5313.284731 C = 5837.371798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.531 5.531 3 C 0.209 3.791 4 C -0.518 4.518 5 H 0.052 0.948 6 C 0.005 3.995 7 N -0.931 5.931 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.283 1.283 11 H -0.272 1.272 12 C 0.116 3.884 13 H 0.066 0.934 14 C 0.054 3.946 15 N -0.850 5.850 16 C -0.057 4.057 17 C -0.119 4.119 18 C -0.102 4.102 19 C -0.120 4.120 20 C -0.046 4.046 21 Cl -0.078 7.078 22 C -0.109 4.109 23 H 0.063 0.937 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.008 0.992 27 H -0.013 1.013 28 H 0.261 0.739 29 H 0.077 0.923 30 H 0.042 0.958 31 H 0.349 0.651 32 H 0.341 0.659 33 H 0.138 0.862 34 H 0.162 0.838 35 H 0.152 0.848 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -17.152 6.517 18.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C 0.083 3.917 4 C -0.556 4.556 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.572 5.572 8 Si 0.784 3.216 9 H -0.200 1.200 10 H -0.208 1.208 11 H -0.196 1.196 12 C 0.007 3.993 13 H 0.084 0.916 14 C -0.078 4.078 15 N -0.382 5.382 16 C -0.058 4.058 17 C -0.138 4.138 18 C -0.120 4.120 19 C -0.138 4.138 20 C -0.073 4.073 21 Cl -0.049 7.049 22 C -0.128 4.128 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.026 0.974 27 H 0.005 0.995 28 H 0.070 0.930 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.163 0.837 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.169 0.831 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.349 -17.199 5.296 18.046 hybrid contribution -0.119 1.001 0.646 1.197 sum -1.468 -16.198 5.941 17.315 Atomic orbital electron populations 1.22614 0.88281 0.99615 1.01979 1.62192 1.08172 1.15584 1.39501 1.19448 0.92420 0.84087 0.95793 1.21521 1.31521 0.96972 1.05608 0.92996 1.25732 0.95509 0.98249 0.99789 1.70060 1.38294 1.11965 1.36844 0.85557 0.78003 0.78168 0.79905 1.19988 1.20815 1.19633 1.20673 0.97949 0.90605 0.90118 0.91598 1.22250 0.99449 0.89669 0.96451 1.58742 1.18027 1.14233 1.47181 1.19798 0.94326 0.94505 0.97206 1.21383 0.96545 0.95592 1.00268 1.21371 0.99583 0.93980 0.97045 1.21300 0.91874 1.01356 0.99279 1.21065 0.92398 0.93585 1.00220 1.98348 1.54665 1.78123 1.73782 1.21196 1.00847 0.92556 0.98199 0.91884 0.94146 0.92259 0.97441 0.99462 0.93026 0.90503 0.94037 0.83667 0.84589 0.84433 0.82030 0.83073 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.91 7.88 127.69 1.01 1.92 16 2 N -0.53 -22.70 4.35 -906.03 -3.94 -26.64 16 3 C 0.21 10.94 4.39 85.56 0.38 11.32 16 4 C -0.52 -29.85 8.38 25.60 0.21 -29.64 16 5 H 0.05 3.01 6.89 -2.91 -0.02 2.99 16 6 C 0.00 0.28 5.46 84.65 0.46 0.74 16 7 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 8 Si 0.96 45.47 29.54 68.60 2.03 47.50 16 9 H -0.27 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 12 C 0.12 3.95 2.39 44.17 0.11 4.06 16 13 H 0.07 2.37 7.37 -2.39 -0.02 2.35 16 14 C 0.05 1.52 5.38 86.30 0.46 1.98 16 15 N -0.85 -25.38 6.19 -186.71 -1.16 -26.54 16 16 C -0.06 -1.70 4.95 -19.87 -0.10 -1.80 16 17 C -0.12 -2.94 9.67 22.27 0.22 -2.73 16 18 C -0.10 -2.05 10.04 22.26 0.22 -1.82 16 19 C -0.12 -2.57 9.83 22.29 0.22 -2.35 16 20 C -0.05 -1.21 6.32 22.32 0.14 -1.07 16 21 Cl -0.08 -1.91 28.96 -2.72 -0.08 -1.99 16 22 C -0.11 -3.28 8.94 22.29 0.20 -3.08 16 23 H 0.06 2.41 4.97 -2.39 -0.01 2.40 16 24 H 0.04 1.80 6.41 -2.39 -0.02 1.78 16 25 H 0.06 2.04 4.90 -2.38 -0.01 2.03 16 26 H 0.01 0.42 6.30 -2.39 -0.02 0.41 16 27 H -0.01 -0.73 7.90 -2.38 -0.02 -0.75 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.08 2.16 6.55 -2.39 -0.02 2.15 16 30 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.35 8.37 9.08 -89.70 -0.81 7.56 16 32 H 0.34 10.62 8.56 -89.69 -0.77 9.85 16 33 H 0.14 2.95 8.00 -2.91 -0.02 2.93 16 34 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 35 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 36 H 0.13 4.11 4.72 -2.91 -0.01 4.10 16 Total: -1.00 -64.89 301.48 0.20 -64.69 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -0.46 Total: 21.18 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 3.53 Total: -22.48 kcal Atomic # 7 Polarization: -104.08 SS G_CDS: -4.81 Total: -108.89 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.50 kcal Atomic # 17 Polarization: -1.91 SS G_CDS: -0.08 Total: -1.99 kcal Total: -64.89 0.20 -64.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042975131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.570 kcal (2) G-P(sol) polarization free energy of solvation -64.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds