Wall clock time and date at job start Mon Mar 30 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46892 * 110.99789 * 2 1 4 4 C 1.50709 * 109.46936 * 76.40302 * 3 2 1 5 5 H 1.07991 * 119.99887 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99890 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00422 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47211 * 90.00175 * 8 6 4 10 10 H 1.48504 * 109.47198 * 209.99898 * 8 6 4 11 11 H 1.48502 * 109.47705 * 329.99994 * 8 6 4 12 12 C 1.46906 * 110.99677 * 236.05079 * 2 1 3 13 13 H 1.08997 * 109.46866 * 323.93482 * 12 2 1 14 14 C 1.52996 * 109.46845 * 83.93715 * 12 2 1 15 15 N 1.46899 * 109.47490 * 302.02561 * 14 12 2 16 16 C 1.50703 * 109.46706 * 203.93556 * 12 2 1 17 17 C 1.38230 * 120.00720 * 339.72358 * 16 12 2 18 18 C 1.38225 * 120.01170 * 179.74935 * 17 16 12 19 19 C 1.38263 * 120.02610 * 0.55025 * 18 17 16 20 20 C 1.38196 * 120.01236 * 359.70342 * 19 18 17 21 21 C 1.38327 * 120.00192 * 160.00118 * 16 12 2 22 22 Cl 1.73596 * 120.01838 * 359.97438 * 21 16 12 23 23 H 1.08996 * 109.47669 * 59.99590 * 1 2 3 24 24 H 1.09003 * 109.47005 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46968 * 299.99658 * 1 2 3 26 26 H 1.08999 * 109.47852 * 316.40098 * 3 2 1 27 27 H 1.09002 * 109.47018 * 196.39365 * 3 2 1 28 28 H 0.96994 * 120.00262 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47473 * 62.02959 * 14 12 2 30 30 H 1.09005 * 109.46885 * 182.02921 * 14 12 2 31 31 H 1.00895 * 111.00570 * 180.02562 * 15 14 12 32 32 H 1.00899 * 110.99875 * 303.96234 * 15 14 12 33 33 H 1.08002 * 119.99663 * 359.97438 * 17 16 12 34 34 H 1.08006 * 119.98563 * 180.29565 * 18 17 16 35 35 H 1.07999 * 119.99158 * 179.72745 * 19 18 17 36 36 H 1.07994 * 120.00489 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8635 1.9600 1.3811 5 1 1.4315 1.3741 2.1788 6 6 2.2944 3.2466 1.6261 7 7 2.8210 3.9600 0.6548 8 14 2.1303 3.9764 3.3377 9 1 3.3569 3.6817 4.1212 10 1 1.9509 5.4469 3.2338 11 1 0.9528 3.3811 4.0191 12 6 1.9954 -0.7659 -1.1377 13 1 1.3500 -1.6234 -1.3281 14 6 2.0359 0.1276 -2.3790 15 7 0.6865 0.6349 -2.6615 16 6 3.3878 -1.2461 -0.8187 17 6 4.1237 -0.6237 0.1722 18 6 5.3988 -1.0674 0.4684 19 6 5.9434 -2.1265 -0.2340 20 6 5.2107 -2.7462 -1.2284 21 6 3.9319 -2.3061 -1.5215 22 17 3.0109 -3.0840 -2.7706 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4309 1.9774 -0.7086 27 1 3.0460 1.3573 -0.2900 28 1 3.1245 4.8649 0.8273 29 1 2.7094 0.9660 -2.2014 30 1 2.3924 -0.4506 -3.2314 31 1 0.6866 1.2279 -3.4777 32 1 0.0296 -0.1238 -2.7661 33 1 3.7008 0.2070 0.7176 34 1 5.9716 -0.5838 1.2460 35 1 6.9415 -2.4699 -0.0051 36 1 5.6360 -3.5737 -1.7767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043051129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:10 Heat of formation + Delta-G solvation = 37.851220 kcal Electronic energy + Delta-G solvation = -18922.952538 eV Core-core repulsion = 16047.340370 eV Total energy + Delta-G solvation = -2875.612168 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.52955 -37.20453 -36.20987 -33.29723 -32.18901 -31.23694 -30.34494 -27.46093 -26.87682 -24.05584 -22.81133 -22.03425 -21.40342 -19.18530 -16.82722 -16.47057 -15.65788 -15.27924 -15.10574 -14.46532 -14.32084 -13.87971 -13.68945 -13.29660 -13.00350 -12.90309 -12.19814 -11.97491 -11.77599 -11.46291 -11.20997 -11.09838 -10.98590 -10.90172 -10.80336 -10.46335 -10.42938 -9.95005 -9.63362 -9.14141 -8.49072 -8.40175 -8.35977 -8.24962 -6.93369 -5.95302 -3.95934 1.49345 1.67837 2.36582 3.35004 3.41587 3.45742 4.00939 4.47716 4.78411 4.91716 5.14186 5.37633 5.40917 5.48939 5.53142 5.65739 5.76563 5.85910 5.97038 6.06818 6.25975 6.39624 6.46651 6.53113 6.73407 6.89740 6.94259 7.01375 7.27648 7.38403 7.42549 7.71838 7.74296 7.91110 8.20540 8.34709 8.66370 9.14210 9.67889 11.14285 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.006801 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.834076 B = 4116.129887 C = 4973.163665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.526 5.526 3 C 0.183 3.817 4 C -0.505 4.505 5 H 0.060 0.940 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.121 3.879 13 H 0.076 0.924 14 C 0.039 3.961 15 N -0.833 5.833 16 C -0.056 4.056 17 C -0.079 4.079 18 C -0.121 4.121 19 C -0.119 4.119 20 C -0.125 4.125 21 C -0.037 4.037 22 Cl -0.087 7.087 23 H 0.054 0.946 24 H 0.032 0.968 25 H 0.062 0.938 26 H 0.019 0.981 27 H 0.028 0.972 28 H 0.259 0.741 29 H 0.084 0.916 30 H 0.021 0.979 31 H 0.336 0.664 32 H 0.332 0.668 33 H 0.174 0.826 34 H 0.125 0.875 35 H 0.123 0.877 36 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.225 -11.616 -6.286 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.249 5.249 3 C 0.058 3.942 4 C -0.544 4.544 5 H 0.078 0.922 6 C -0.145 4.145 7 N -0.537 5.537 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 C 0.011 3.989 13 H 0.094 0.906 14 C -0.093 4.093 15 N -0.362 5.362 16 C -0.058 4.058 17 C -0.097 4.097 18 C -0.139 4.139 19 C -0.137 4.137 20 C -0.144 4.144 21 C -0.064 4.064 22 Cl -0.058 7.058 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.081 0.919 26 H 0.037 0.963 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.102 0.898 30 H 0.039 0.961 31 H 0.149 0.851 32 H 0.144 0.856 33 H 0.191 0.809 34 H 0.143 0.857 35 H 0.141 0.859 36 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.414 -11.369 -5.286 12.768 hybrid contribution -0.169 0.245 -0.858 0.908 sum 2.246 -11.124 -6.144 12.905 Atomic orbital electron populations 1.22419 0.88505 0.98801 1.02397 1.62356 1.07465 1.18111 1.36951 1.19979 0.94968 0.82199 0.97041 1.21250 1.39618 0.97822 0.95680 0.92152 1.24948 0.95696 0.97057 0.96794 1.69958 1.42013 1.10201 1.31556 0.86594 0.78416 0.78104 0.84839 1.20814 1.21487 1.19959 1.20521 0.91703 0.96307 0.90400 0.90573 1.22485 0.91230 0.99073 0.96484 1.58822 1.07671 1.24546 1.45132 1.19735 0.96538 0.93930 0.95564 1.22022 0.92824 0.99616 0.95241 1.21386 0.96134 0.96633 0.99743 1.21036 0.99627 0.96835 0.96246 1.20827 0.92905 1.01150 0.99480 1.20778 0.93611 0.97520 0.94471 1.98317 1.74357 1.80465 1.52657 0.92744 0.94905 0.91875 0.96344 0.95378 0.93135 0.89789 0.96051 0.85139 0.85596 0.80936 0.85675 0.85899 0.85786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.98 60.07 0.54 1.07 16 2 N -0.53 -11.03 4.01 -237.73 -0.95 -11.98 16 3 C 0.18 4.51 2.08 -4.98 -0.01 4.50 16 4 C -0.50 -13.78 8.36 -34.44 -0.29 -14.06 16 5 H 0.06 1.66 7.76 -52.49 -0.41 1.26 16 6 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.07 13.29 55.43 0.74 -25.34 16 8 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 12 C 0.12 2.18 1.75 -68.86 -0.12 2.06 16 13 H 0.08 1.31 6.97 -51.93 -0.36 0.95 16 14 C 0.04 0.68 5.47 -3.83 -0.02 0.66 16 15 N -0.83 -13.02 6.27 -10.37 -0.06 -13.09 16 16 C -0.06 -1.00 5.05 -104.59 -0.53 -1.52 16 17 C -0.08 -1.50 8.37 -39.59 -0.33 -1.83 16 18 C -0.12 -1.92 10.05 -39.58 -0.40 -2.32 16 19 C -0.12 -1.63 10.05 -39.59 -0.40 -2.02 16 20 C -0.12 -1.74 9.83 -39.54 -0.39 -2.13 16 21 C -0.04 -0.58 6.31 -39.50 -0.25 -0.83 16 22 Cl -0.09 -1.20 26.63 -51.86 -1.38 -2.58 16 23 H 0.05 1.03 5.32 -51.93 -0.28 0.75 16 24 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 25 H 0.06 1.33 7.63 -51.93 -0.40 0.93 16 26 H 0.02 0.50 6.83 -51.93 -0.35 0.15 16 27 H 0.03 0.74 4.91 -51.93 -0.25 0.48 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.08 1.70 6.44 -51.93 -0.33 1.37 16 30 H 0.02 0.34 7.26 -51.93 -0.38 -0.04 16 31 H 0.34 4.67 9.08 -39.29 -0.36 4.32 16 32 H 0.33 4.54 8.52 -39.29 -0.33 4.20 16 33 H 0.17 3.84 4.62 -52.49 -0.24 3.60 16 34 H 0.13 1.78 8.06 -52.48 -0.42 1.36 16 35 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 298.57 15.07 4.50 4.50 Total: -1.00 -28.79 298.57 -8.99 -37.78 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.51 Total: 9.22 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -2.29 Total: -14.96 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.28 Total: -50.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -1.38 Total: -2.58 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.79 -8.99 -37.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043051129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.629 kcal (2) G-P(sol) polarization free energy of solvation -28.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds