Wall clock time and date at job start Mon Mar 30 2020 06:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46892 * 110.99789 * 2 1 4 4 C 1.50709 * 109.46936 * 76.40302 * 3 2 1 5 5 H 1.07991 * 119.99887 * 359.97438 * 4 3 2 6 6 C 1.37874 * 119.99890 * 179.97438 * 4 3 2 7 7 N 1.31516 * 120.00422 * 359.97438 * 6 4 3 8 8 Si 1.86795 * 119.99812 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47211 * 90.00175 * 8 6 4 10 10 H 1.48504 * 109.47198 * 209.99898 * 8 6 4 11 11 H 1.48502 * 109.47705 * 329.99994 * 8 6 4 12 12 C 1.46906 * 110.99677 * 236.05079 * 2 1 3 13 13 H 1.08997 * 109.46866 * 323.93482 * 12 2 1 14 14 C 1.52996 * 109.46845 * 83.93715 * 12 2 1 15 15 N 1.46899 * 109.47490 * 302.02561 * 14 12 2 16 16 C 1.50703 * 109.46706 * 203.93556 * 12 2 1 17 17 C 1.38230 * 120.00720 * 339.72358 * 16 12 2 18 18 C 1.38225 * 120.01170 * 179.74935 * 17 16 12 19 19 C 1.38263 * 120.02610 * 0.55025 * 18 17 16 20 20 C 1.38196 * 120.01236 * 359.70342 * 19 18 17 21 21 C 1.38327 * 120.00192 * 160.00118 * 16 12 2 22 22 Cl 1.73596 * 120.01838 * 359.97438 * 21 16 12 23 23 H 1.08996 * 109.47669 * 59.99590 * 1 2 3 24 24 H 1.09003 * 109.47005 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.46968 * 299.99658 * 1 2 3 26 26 H 1.08999 * 109.47852 * 316.40098 * 3 2 1 27 27 H 1.09002 * 109.47018 * 196.39365 * 3 2 1 28 28 H 0.96994 * 120.00262 * 180.02562 * 7 6 4 29 29 H 1.08999 * 109.47473 * 62.02959 * 14 12 2 30 30 H 1.09005 * 109.46885 * 182.02921 * 14 12 2 31 31 H 1.00895 * 111.00570 * 180.02562 * 15 14 12 32 32 H 1.00899 * 110.99875 * 303.96234 * 15 14 12 33 33 H 1.08002 * 119.99663 * 359.97438 * 17 16 12 34 34 H 1.08006 * 119.98563 * 180.29565 * 18 17 16 35 35 H 1.07999 * 119.99158 * 179.72745 * 19 18 17 36 36 H 1.07994 * 120.00489 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.8635 1.9600 1.3811 5 1 1.4315 1.3741 2.1788 6 6 2.2944 3.2466 1.6261 7 7 2.8210 3.9600 0.6548 8 14 2.1303 3.9764 3.3377 9 1 3.3569 3.6817 4.1212 10 1 1.9509 5.4469 3.2338 11 1 0.9528 3.3811 4.0191 12 6 1.9954 -0.7659 -1.1377 13 1 1.3500 -1.6234 -1.3281 14 6 2.0359 0.1276 -2.3790 15 7 0.6865 0.6349 -2.6615 16 6 3.3878 -1.2461 -0.8187 17 6 4.1237 -0.6237 0.1722 18 6 5.3988 -1.0674 0.4684 19 6 5.9434 -2.1265 -0.2340 20 6 5.2107 -2.7462 -1.2284 21 6 3.9319 -2.3061 -1.5215 22 17 3.0109 -3.0840 -2.7706 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.4309 1.9774 -0.7086 27 1 3.0460 1.3573 -0.2900 28 1 3.1245 4.8649 0.8273 29 1 2.7094 0.9660 -2.2014 30 1 2.3924 -0.4506 -3.2314 31 1 0.6866 1.2279 -3.4777 32 1 0.0296 -0.1238 -2.7661 33 1 3.7008 0.2070 0.7176 34 1 5.9716 -0.5838 1.2460 35 1 6.9415 -2.4699 -0.0051 36 1 5.6360 -3.5737 -1.7767 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043051129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:10 Heat of formation + Delta-G solvation = 18.993202 kcal Electronic energy + Delta-G solvation = -18923.770283 eV Core-core repulsion = 16047.340370 eV Total energy + Delta-G solvation = -2876.429913 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.87326 -38.63966 -37.36009 -35.10501 -33.92830 -32.60182 -31.57531 -29.37299 -28.29784 -25.87453 -24.29617 -23.32977 -22.88537 -20.72605 -18.50437 -18.10685 -16.99739 -16.73762 -16.68095 -16.15425 -15.65544 -15.37320 -15.12582 -14.77918 -14.36443 -14.24092 -13.94420 -13.51832 -13.30316 -13.01451 -12.80493 -12.64955 -12.50265 -12.33200 -12.27214 -12.24472 -11.89616 -11.66378 -11.34278 -11.12494 -10.46563 -9.76524 -9.68978 -9.54847 -8.58772 -8.08667 -6.17393 0.27450 0.45451 1.18786 1.42731 1.43130 1.54151 2.45462 2.77106 3.21882 3.42895 3.52385 4.03405 4.05619 4.18316 4.19890 4.33769 4.47788 4.57264 4.61850 4.74151 4.86205 4.96729 5.11039 5.17259 5.33109 5.36568 5.45034 5.59148 5.63152 5.72291 5.79483 6.01789 6.18767 6.23802 6.53999 6.60778 6.81430 7.01534 7.51101 8.99484 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.020846 B = 0.006801 C = 0.005629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.834076 B = 4116.129887 C = 4973.163665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.534 5.534 3 C 0.212 3.788 4 C -0.517 4.517 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.930 5.930 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.125 3.875 13 H 0.089 0.911 14 C 0.053 3.947 15 N -0.842 5.842 16 C -0.076 4.076 17 C -0.110 4.110 18 C -0.128 4.128 19 C -0.106 4.106 20 C -0.117 4.117 21 C -0.043 4.043 22 Cl -0.070 7.070 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.040 0.960 26 H -0.012 1.012 27 H 0.010 0.990 28 H 0.260 0.740 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.346 0.654 32 H 0.346 0.654 33 H 0.131 0.869 34 H 0.134 0.866 35 H 0.163 0.837 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.903 -13.580 -6.539 15.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.257 5.257 3 C 0.086 3.914 4 C -0.556 4.556 5 H 0.070 0.930 6 C -0.191 4.191 7 N -0.571 5.571 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.195 1.195 12 C 0.015 3.985 13 H 0.107 0.893 14 C -0.080 4.080 15 N -0.374 5.374 16 C -0.078 4.078 17 C -0.128 4.128 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.135 4.135 21 C -0.070 4.070 22 Cl -0.041 7.041 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.059 0.941 26 H 0.006 0.994 27 H 0.028 0.972 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.160 0.840 32 H 0.160 0.840 33 H 0.148 0.852 34 H 0.152 0.848 35 H 0.180 0.820 36 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.076 -13.355 -5.546 14.784 hybrid contribution -0.364 0.766 -0.834 1.189 sum 2.712 -12.589 -6.380 14.372 Atomic orbital electron populations 1.22415 0.87642 1.00301 1.01547 1.62231 1.08299 1.16050 1.39137 1.19473 0.93473 0.83653 0.94769 1.21542 1.39190 0.98136 0.96689 0.93023 1.25725 0.95365 0.97491 1.00531 1.70080 1.42992 1.10490 1.33549 0.85583 0.78637 0.77230 0.80343 1.19983 1.21085 1.19456 1.20541 0.92370 0.96066 0.89487 0.89312 1.22218 0.91352 0.97593 0.96809 1.58706 1.07240 1.25403 1.46053 1.19714 0.96426 0.95229 0.96394 1.21714 0.94721 0.99767 0.96630 1.21549 0.95102 0.97545 1.00429 1.21425 1.00978 0.95134 0.94869 1.21264 0.91930 1.01319 0.99017 1.20863 0.94503 0.96979 0.94628 1.98320 1.74155 1.79909 1.51740 0.92248 0.92143 0.94093 0.99371 0.97233 0.93089 0.93584 0.94284 0.83997 0.84013 0.85171 0.84766 0.81970 0.82524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.15 8.98 127.69 1.15 2.29 16 2 N -0.53 -23.05 4.01 -906.03 -3.63 -26.68 16 3 C 0.21 10.99 2.08 85.56 0.18 11.17 16 4 C -0.52 -29.31 8.36 25.60 0.21 -29.10 16 5 H 0.05 2.95 7.76 -2.91 -0.02 2.93 16 6 C 0.01 0.38 5.46 84.65 0.46 0.84 16 7 N -0.93 -55.77 13.29 21.45 0.28 -55.49 16 8 Si 0.96 44.87 29.54 68.60 2.03 46.90 16 9 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 10 H -0.29 -13.13 7.11 99.48 0.71 -12.43 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.13 4.53 1.75 44.17 0.08 4.61 16 13 H 0.09 2.95 6.97 -2.39 -0.02 2.93 16 14 C 0.05 1.83 5.47 86.30 0.47 2.30 16 15 N -0.84 -26.29 6.27 -186.72 -1.17 -27.46 16 16 C -0.08 -2.70 5.05 -19.84 -0.10 -2.80 16 17 C -0.11 -4.28 8.37 22.26 0.19 -4.09 16 18 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 19 C -0.11 -2.57 10.05 22.27 0.22 -2.35 16 20 C -0.12 -2.86 9.83 22.29 0.22 -2.64 16 21 C -0.04 -1.26 6.31 22.32 0.14 -1.11 16 22 Cl -0.07 -1.77 26.63 -2.72 -0.07 -1.84 16 23 H 0.06 2.25 5.32 -2.39 -0.01 2.24 16 24 H 0.06 2.00 7.96 -2.39 -0.02 1.98 16 25 H 0.04 1.75 7.63 -2.39 -0.02 1.73 16 26 H -0.01 -0.66 6.83 -2.39 -0.02 -0.67 16 27 H 0.01 0.54 4.91 -2.39 -0.01 0.53 16 28 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 29 H 0.05 1.96 6.44 -2.39 -0.02 1.95 16 30 H 0.04 1.21 7.26 -2.38 -0.02 1.19 16 31 H 0.35 9.58 9.08 -89.70 -0.81 8.77 16 32 H 0.35 9.05 8.52 -89.69 -0.76 8.29 16 33 H 0.13 6.19 4.62 -2.91 -0.01 6.18 16 34 H 0.13 3.78 8.06 -2.91 -0.02 3.76 16 35 H 0.16 2.66 8.06 -2.91 -0.02 2.64 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -64.18 298.57 0.42 -63.75 By element: Atomic # 1 Polarization: 25.92 SS G_CDS: -0.46 Total: 25.46 kcal Atomic # 6 Polarization: -28.09 SS G_CDS: 3.44 Total: -24.65 kcal Atomic # 7 Polarization: -105.11 SS G_CDS: -4.51 Total: -109.62 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 17 Polarization: -1.77 SS G_CDS: -0.07 Total: -1.84 kcal Total: -64.18 0.42 -63.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043051129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.747 kcal (2) G-P(sol) polarization free energy of solvation -64.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds