Wall clock time and date at job start Mon Mar 30 2020 07:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33388 * 125.20473 * 2 1 4 4 C 1.38426 * 114.92121 * 179.74957 * 3 2 1 5 5 C 1.33392 * 114.91987 * 0.42973 * 4 3 2 6 6 C 1.50703 * 125.20321 * 179.86107 * 5 4 3 7 7 H 1.08999 * 109.46843 * 345.45412 * 6 5 4 8 8 C 1.52997 * 109.47336 * 105.45687 * 6 5 4 9 9 H 1.08998 * 109.46749 * 65.76563 * 8 6 5 10 10 C 1.53001 * 109.47269 * 185.76927 * 8 6 5 11 11 N 1.46899 * 109.46920 * 305.76823 * 8 6 5 12 12 N 1.46898 * 109.46851 * 225.45876 * 6 5 4 13 13 C 1.46904 * 110.99968 * 279.96643 * 12 6 5 14 14 C 1.46903 * 110.99837 * 156.01478 * 12 6 5 15 15 C 1.50704 * 109.47258 * 200.53040 * 14 12 6 16 16 H 1.08001 * 119.99748 * 359.97438 * 15 14 12 17 17 C 1.37868 * 120.00291 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00088 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00095 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46779 * 119.99868 * 19 17 15 22 22 H 1.48504 * 109.47327 * 239.99586 * 19 17 15 23 23 S 1.75884 * 109.59288 * 359.59612 * 5 4 3 24 24 H 1.09001 * 109.47503 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47039 * 300.00231 * 1 2 3 26 26 H 1.09007 * 109.47070 * 59.99672 * 1 2 3 27 27 H 1.07997 * 122.54264 * 359.97438 * 3 2 1 28 28 H 1.07994 * 122.54105 * 180.27568 * 4 3 2 29 29 H 1.08994 * 109.47027 * 165.29408 * 10 8 6 30 30 H 1.09010 * 109.46643 * 285.28960 * 10 8 6 31 31 H 1.08993 * 109.46979 * 45.28660 * 10 8 6 32 32 H 1.00906 * 111.00057 * 179.97438 * 11 8 6 33 33 H 1.00897 * 111.00182 * 303.94693 * 11 8 6 34 34 H 1.08993 * 109.46847 * 53.54041 * 13 12 6 35 35 H 1.08999 * 109.46718 * 293.54202 * 13 12 6 36 36 H 1.09002 * 109.46687 * 173.54297 * 13 12 6 37 37 H 1.08999 * 109.47176 * 320.52698 * 14 12 6 38 38 H 1.09001 * 109.47418 * 80.52849 * 14 12 6 39 39 H 0.96999 * 120.00100 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 0.0055 5 6 3.9750 -0.4478 0.0009 6 6 5.3860 -0.9772 0.0022 7 1 6.0762 -0.1724 -0.2507 8 6 5.7250 -1.5222 1.3911 9 1 5.1029 -2.3922 1.6017 10 6 7.1998 -1.9272 1.4341 11 7 5.4726 -0.4842 2.3994 12 7 5.5057 -2.0546 -0.9892 13 6 4.9791 -3.3192 -0.4586 14 6 6.8974 -2.2089 -1.4334 15 6 6.9251 -2.9252 -2.7591 16 1 6.0013 -3.2351 -3.2248 17 6 8.1298 -3.1858 -3.3768 18 7 9.2549 -2.8088 -2.8095 19 14 8.1641 -4.0743 -5.0197 20 1 6.7755 -4.3880 -5.4418 21 1 8.8064 -3.2058 -6.0387 22 1 8.9378 -5.3346 -4.8848 23 16 2.5209 -1.4372 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8670 2.0894 -0.0004 28 1 4.3720 1.6349 0.0105 29 1 7.5085 -2.0655 2.4703 30 1 7.3365 -2.8599 0.8867 31 1 7.8048 -1.1449 0.9760 32 1 5.6886 -0.8200 3.3261 33 1 5.9892 0.3568 2.1898 34 1 3.9627 -3.1658 -0.0961 35 1 5.6102 -3.6595 0.3623 36 1 4.9738 -4.0703 -1.2484 37 1 7.3553 -1.2258 -1.5421 38 1 7.4522 -2.7886 -0.6956 39 1 10.1024 -2.9918 -3.2444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043239465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:22 Heat of formation + Delta-G solvation = 39.745416 kcal Electronic energy + Delta-G solvation = -18950.865756 eV Core-core repulsion = 16213.212527 eV Total energy + Delta-G solvation = -2737.653229 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.90735 -37.09025 -34.24951 -32.54124 -31.71490 -28.45771 -28.19479 -27.26688 -25.17703 -23.82784 -22.32645 -21.09850 -19.69000 -18.49751 -16.69107 -16.17588 -15.91122 -15.00290 -14.94447 -14.57601 -13.93272 -13.64981 -13.62414 -13.16978 -12.93448 -12.73432 -12.34845 -12.02596 -11.94789 -11.83639 -11.68618 -11.38247 -11.26817 -11.02898 -10.95990 -10.67206 -10.50261 -10.36667 -10.02045 -9.80343 -9.27890 -8.49729 -8.42462 -7.94829 -7.92711 -7.26929 -6.04129 -4.04709 1.51845 2.09873 2.53265 3.22765 3.30279 3.38095 3.43727 4.40750 4.71411 4.91907 5.08603 5.15710 5.30452 5.38771 5.40670 5.47783 5.60975 5.70442 5.83206 5.92092 5.96473 5.99413 6.04457 6.13306 6.16885 6.31527 6.50089 6.61056 6.65420 6.79065 6.99493 7.13277 7.28604 7.35323 7.60371 7.79584 8.03460 8.12494 8.49151 9.03260 9.59412 11.06025 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.005757 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.565757 B = 4862.524553 C = 5601.607072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.217 4.217 3 C -0.132 4.132 4 C -0.149 4.149 5 C -0.104 4.104 6 C 0.152 3.848 7 H 0.088 0.912 8 C 0.061 3.939 9 H 0.083 0.917 10 C -0.193 4.193 11 N -0.835 5.835 12 N -0.525 5.525 13 C 0.031 3.969 14 C 0.186 3.814 15 C -0.503 4.503 16 H 0.064 0.936 17 C 0.055 3.945 18 N -0.900 5.900 19 Si 0.896 3.104 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 S 0.112 5.888 24 H 0.061 0.939 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.046 0.954 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.334 0.666 33 H 0.336 0.664 34 H 0.047 0.953 35 H 0.024 0.976 36 H 0.075 0.925 37 H 0.026 0.974 38 H 0.010 0.990 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.246 4.698 9.601 15.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.334 4.334 3 C -0.163 4.163 4 C -0.178 4.178 5 C -0.222 4.222 6 C 0.040 3.960 7 H 0.106 0.894 8 C -0.052 4.052 9 H 0.101 0.899 10 C -0.252 4.252 11 N -0.363 5.363 12 N -0.249 5.249 13 C -0.118 4.118 14 C 0.061 3.939 15 C -0.542 4.542 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.540 5.540 19 Si 0.724 3.276 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.212 1.212 23 S 0.376 5.624 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.144 0.856 28 H 0.146 0.854 29 H 0.065 0.935 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.065 0.935 35 H 0.042 0.958 36 H 0.094 0.906 37 H 0.044 0.956 38 H 0.028 0.972 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -12.393 3.234 8.893 15.593 hybrid contribution 2.109 0.847 -0.037 2.273 sum -10.284 4.082 8.856 14.172 Atomic orbital electron populations 1.20199 0.88876 1.02147 1.02054 1.24571 0.99518 0.97390 1.11900 1.19835 0.93020 0.98490 1.04967 1.19778 0.95691 0.95693 1.06652 1.24219 0.97397 0.95824 1.04807 1.20332 0.90243 0.95866 0.89544 0.89360 1.22237 0.95019 0.95022 0.92941 0.89874 1.22927 0.97156 1.04038 1.01052 1.58930 1.65344 1.07378 1.04684 1.62386 1.25266 1.03795 1.33405 1.22434 0.97028 0.93235 0.99090 1.20063 0.81089 0.97083 0.95621 1.21225 0.92594 1.36014 1.04349 0.91820 1.24965 0.95530 0.96180 0.97935 1.69958 0.97458 1.47588 1.39035 0.86461 0.78107 0.79230 0.83764 1.19636 1.21068 1.21168 1.84111 0.96398 1.08856 1.73065 0.92035 0.91410 0.91354 0.85641 0.85408 0.93492 0.90265 0.92137 0.85376 0.85180 0.93491 0.95782 0.90605 0.95569 0.97225 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.80 10.38 36.00 0.37 -0.43 16 2 C -0.22 -3.10 6.51 -36.01 -0.23 -3.33 16 3 C -0.13 -1.91 10.05 -41.21 -0.41 -2.32 16 4 C -0.15 -2.33 10.03 -41.21 -0.41 -2.74 16 5 C -0.10 -1.76 4.84 -36.00 -0.17 -1.93 16 6 C 0.15 2.71 2.07 -68.87 -0.14 2.57 16 7 H 0.09 1.66 7.38 -51.93 -0.38 1.28 16 8 C 0.06 0.95 2.42 -67.71 -0.16 0.78 16 9 H 0.08 1.35 6.08 -51.93 -0.32 1.03 16 10 C -0.19 -3.10 7.95 37.16 0.30 -2.81 16 11 N -0.83 -10.85 8.66 -4.67 -0.04 -10.89 16 12 N -0.53 -11.00 4.50 -237.73 -1.07 -12.07 16 13 C 0.03 0.59 7.86 60.07 0.47 1.06 16 14 C 0.19 4.60 3.76 -4.97 -0.02 4.58 16 15 C -0.50 -13.90 8.76 -34.44 -0.30 -14.20 16 16 H 0.06 1.78 7.77 -52.49 -0.41 1.37 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 18 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 19 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 20 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 S 0.11 1.76 20.20 -107.50 -2.17 -0.41 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.13 1.52 8.06 -52.49 -0.42 1.10 16 28 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 29 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 30 H 0.08 1.48 4.57 -51.92 -0.24 1.24 16 31 H 0.06 1.04 7.91 -51.93 -0.41 0.63 16 32 H 0.33 3.74 9.00 -39.29 -0.35 3.38 16 33 H 0.34 4.11 8.98 -39.29 -0.35 3.75 16 34 H 0.05 0.81 4.77 -41.08 -0.20 0.61 16 35 H 0.02 0.44 5.28 -51.93 -0.27 0.16 16 36 H 0.08 1.53 7.70 -51.93 -0.40 1.13 16 37 H 0.03 0.70 7.53 -51.93 -0.39 0.31 16 38 H 0.01 0.26 5.02 -51.93 -0.26 0.00 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 316.51 15.07 4.77 4.77 Total: -1.00 -29.31 316.51 -9.27 -38.57 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -5.65 Total: 6.25 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -0.82 Total: -17.34 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: -0.37 Total: -48.40 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.17 Total: -0.41 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -29.31 -9.27 -38.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043239465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.318 kcal (2) G-P(sol) polarization free energy of solvation -29.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds