Wall clock time and date at job start Mon Mar 30 2020 07:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33388 * 125.20473 * 2 1 4 4 C 1.38426 * 114.92121 * 179.74957 * 3 2 1 5 5 C 1.33392 * 114.91987 * 0.42973 * 4 3 2 6 6 C 1.50703 * 125.20321 * 179.86107 * 5 4 3 7 7 H 1.08999 * 109.46843 * 345.45412 * 6 5 4 8 8 C 1.52997 * 109.47336 * 105.45687 * 6 5 4 9 9 H 1.08998 * 109.46749 * 65.76563 * 8 6 5 10 10 C 1.53001 * 109.47269 * 185.76927 * 8 6 5 11 11 N 1.46899 * 109.46920 * 305.76823 * 8 6 5 12 12 N 1.46898 * 109.46851 * 225.45876 * 6 5 4 13 13 C 1.46904 * 110.99968 * 279.96643 * 12 6 5 14 14 C 1.46903 * 110.99837 * 156.01478 * 12 6 5 15 15 C 1.50704 * 109.47258 * 200.53040 * 14 12 6 16 16 H 1.08001 * 119.99748 * 359.97438 * 15 14 12 17 17 C 1.37868 * 120.00291 * 180.02562 * 15 14 12 18 18 N 1.31519 * 120.00088 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00095 * 179.97438 * 17 15 14 20 20 H 1.48490 * 109.47118 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46779 * 119.99868 * 19 17 15 22 22 H 1.48504 * 109.47327 * 239.99586 * 19 17 15 23 23 S 1.75884 * 109.59288 * 359.59612 * 5 4 3 24 24 H 1.09001 * 109.47503 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47039 * 300.00231 * 1 2 3 26 26 H 1.09007 * 109.47070 * 59.99672 * 1 2 3 27 27 H 1.07997 * 122.54264 * 359.97438 * 3 2 1 28 28 H 1.07994 * 122.54105 * 180.27568 * 4 3 2 29 29 H 1.08994 * 109.47027 * 165.29408 * 10 8 6 30 30 H 1.09010 * 109.46643 * 285.28960 * 10 8 6 31 31 H 1.08993 * 109.46979 * 45.28660 * 10 8 6 32 32 H 1.00906 * 111.00057 * 179.97438 * 11 8 6 33 33 H 1.00897 * 111.00182 * 303.94693 * 11 8 6 34 34 H 1.08993 * 109.46847 * 53.54041 * 13 12 6 35 35 H 1.08999 * 109.46718 * 293.54202 * 13 12 6 36 36 H 1.09002 * 109.46687 * 173.54297 * 13 12 6 37 37 H 1.08999 * 109.47176 * 320.52698 * 14 12 6 38 38 H 1.09001 * 109.47418 * 80.52849 * 14 12 6 39 39 H 0.96999 * 120.00100 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6380 0.8428 0.0055 5 6 3.9750 -0.4478 0.0009 6 6 5.3860 -0.9772 0.0022 7 1 6.0762 -0.1724 -0.2507 8 6 5.7250 -1.5222 1.3911 9 1 5.1029 -2.3922 1.6017 10 6 7.1998 -1.9272 1.4341 11 7 5.4726 -0.4842 2.3994 12 7 5.5057 -2.0546 -0.9892 13 6 4.9791 -3.3192 -0.4586 14 6 6.8974 -2.2089 -1.4334 15 6 6.9251 -2.9252 -2.7591 16 1 6.0013 -3.2351 -3.2248 17 6 8.1298 -3.1858 -3.3768 18 7 9.2549 -2.8088 -2.8095 19 14 8.1641 -4.0743 -5.0197 20 1 6.7755 -4.3880 -5.4418 21 1 8.8064 -3.2058 -6.0387 22 1 8.9378 -5.3346 -4.8848 23 16 2.5209 -1.4372 0.0006 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 1.8670 2.0894 -0.0004 28 1 4.3720 1.6349 0.0105 29 1 7.5085 -2.0655 2.4703 30 1 7.3365 -2.8599 0.8867 31 1 7.8048 -1.1449 0.9760 32 1 5.6886 -0.8200 3.3261 33 1 5.9892 0.3568 2.1898 34 1 3.9627 -3.1658 -0.0961 35 1 5.6102 -3.6595 0.3623 36 1 4.9738 -4.0703 -1.2484 37 1 7.3553 -1.2258 -1.5421 38 1 7.4522 -2.7886 -0.6956 39 1 10.1024 -2.9918 -3.2444 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043239465.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:22 Heat of formation + Delta-G solvation = 19.877318 kcal Electronic energy + Delta-G solvation = -18951.727301 eV Core-core repulsion = 16213.212527 eV Total energy + Delta-G solvation = -2738.514774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34602 -38.30558 -35.79477 -34.45380 -32.89150 -29.97226 -29.47078 -28.92298 -26.74539 -25.33061 -23.50410 -22.81153 -21.09576 -19.71372 -18.59465 -17.48384 -17.33478 -16.67752 -16.40311 -16.15279 -15.34792 -15.03911 -14.65148 -14.51157 -14.43355 -13.85975 -13.76992 -13.64824 -13.33117 -13.20561 -12.99449 -12.94579 -12.81263 -12.55070 -12.43371 -12.28486 -12.12442 -12.02803 -11.69650 -11.32317 -11.15380 -10.58232 -9.61194 -9.17606 -9.15372 -8.91252 -8.17904 -6.27009 0.32977 0.90287 1.32273 1.39472 1.41068 1.54032 2.04697 2.40853 3.13437 3.27698 3.62926 3.71666 4.04175 4.12048 4.18284 4.40035 4.44625 4.48825 4.54881 4.62470 4.72288 4.80835 4.84218 4.89819 4.95278 5.02987 5.11354 5.19877 5.25590 5.37801 5.44472 5.60670 5.67441 5.84292 6.07500 6.18643 6.33461 6.59384 6.62258 6.88043 7.41800 8.91177 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021674 B = 0.005757 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.565757 B = 4862.524553 C = 5601.607072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.206 4.206 3 C -0.144 4.144 4 C -0.146 4.146 5 C -0.131 4.131 6 C 0.155 3.845 7 H 0.071 0.929 8 C 0.076 3.924 9 H 0.080 0.920 10 C -0.185 4.185 11 N -0.828 5.828 12 N -0.537 5.537 13 C 0.036 3.964 14 C 0.205 3.795 15 C -0.521 4.521 16 H 0.055 0.945 17 C 0.006 3.994 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.278 1.278 23 S 0.089 5.911 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.082 0.918 27 H 0.152 0.848 28 H 0.136 0.864 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.349 0.651 33 H 0.342 0.658 34 H 0.068 0.932 35 H 0.029 0.971 36 H 0.059 0.941 37 H -0.003 1.003 38 H -0.001 1.001 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.044 5.179 10.041 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.322 4.322 3 C -0.174 4.174 4 C -0.176 4.176 5 C -0.249 4.249 6 C 0.044 3.956 7 H 0.089 0.911 8 C -0.038 4.038 9 H 0.098 0.902 10 C -0.244 4.244 11 N -0.358 5.358 12 N -0.260 5.260 13 C -0.113 4.113 14 C 0.079 3.921 15 C -0.559 4.559 16 H 0.074 0.926 17 C -0.192 4.192 18 N -0.572 5.572 19 Si 0.788 3.212 20 H -0.192 1.192 21 H -0.206 1.206 22 H -0.203 1.203 23 S 0.352 5.648 24 H 0.085 0.915 25 H 0.106 0.894 26 H 0.101 0.899 27 H 0.170 0.830 28 H 0.154 0.846 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.162 0.838 33 H 0.155 0.845 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.077 0.923 37 H 0.015 0.985 38 H 0.017 0.983 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.203 3.720 9.357 17.411 hybrid contribution 2.593 0.784 -0.123 2.711 sum -11.611 4.504 9.234 15.504 Atomic orbital electron populations 1.20341 0.86264 1.03118 1.03656 1.25007 1.01105 0.96015 1.10121 1.20096 0.92340 0.99869 1.05124 1.20051 0.96836 0.95427 1.05256 1.24071 0.96941 0.96565 1.07365 1.20230 0.91071 0.94261 0.90052 0.91120 1.21946 0.94100 0.95334 0.92380 0.90173 1.22835 0.97701 1.01828 1.01992 1.58848 1.65333 1.06848 1.04799 1.62239 1.22691 1.05376 1.35700 1.22387 0.98249 0.92030 0.98592 1.19670 0.83118 0.94716 0.94578 1.21530 0.92433 1.36361 1.05608 0.92632 1.25782 0.95127 0.96865 1.01463 1.70066 0.98005 1.48574 1.40599 0.85433 0.78245 0.78181 0.79359 1.19165 1.20592 1.20327 1.84053 0.96701 1.10337 1.73670 0.91455 0.89449 0.89909 0.83032 0.84626 0.90866 0.93140 0.93804 0.83771 0.84503 0.91409 0.95227 0.92269 0.98511 0.98343 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.37 10.38 71.23 0.74 -0.63 16 2 C -0.21 -5.34 6.51 24.59 0.16 -5.18 16 3 C -0.14 -3.79 10.05 21.22 0.21 -3.58 16 4 C -0.15 -4.37 10.03 21.22 0.21 -4.16 16 5 C -0.13 -4.37 4.84 24.59 0.12 -4.25 16 6 C 0.16 5.64 2.07 44.17 0.09 5.73 16 7 H 0.07 2.77 7.38 -2.39 -0.02 2.76 16 8 C 0.08 2.34 2.42 44.91 0.11 2.45 16 9 H 0.08 2.55 6.08 -2.39 -0.01 2.53 16 10 C -0.18 -6.04 7.95 71.98 0.57 -5.46 16 11 N -0.83 -20.44 8.66 -168.68 -1.46 -21.90 16 12 N -0.54 -23.15 4.50 -906.03 -4.07 -27.22 16 13 C 0.04 1.39 7.86 127.69 1.00 2.39 16 14 C 0.20 10.59 3.76 85.56 0.32 10.91 16 15 C -0.52 -29.57 8.76 25.60 0.22 -29.35 16 16 H 0.06 3.18 7.77 -2.91 -0.02 3.15 16 17 C 0.01 0.32 5.46 84.65 0.46 0.78 16 18 N -0.93 -55.29 13.29 21.44 0.28 -55.01 16 19 Si 0.96 44.65 29.54 68.60 2.03 46.67 16 20 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 23 S 0.09 2.70 20.20 -56.49 -1.14 1.56 16 24 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 25 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 27 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 28 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 29 H 0.07 1.96 8.10 -2.39 -0.02 1.94 16 30 H 0.05 1.95 4.57 -2.38 -0.01 1.94 16 31 H 0.04 1.55 7.91 -2.39 -0.02 1.54 16 32 H 0.35 7.08 9.00 -89.69 -0.81 6.28 16 33 H 0.34 7.97 8.98 -89.70 -0.81 7.17 16 34 H 0.07 2.33 4.77 -9.29 -0.04 2.28 16 35 H 0.03 1.10 5.28 -2.39 -0.01 1.08 16 36 H 0.06 2.44 7.70 -2.39 -0.02 2.43 16 37 H 0.00 -0.18 7.53 -2.39 -0.02 -0.20 16 38 H 0.00 -0.05 5.02 -2.39 -0.01 -0.06 16 39 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 Total: -1.00 -63.39 316.51 -0.71 -64.10 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -0.58 Total: 22.16 kcal Atomic # 6 Polarization: -34.59 SS G_CDS: 4.23 Total: -30.36 kcal Atomic # 7 Polarization: -98.88 SS G_CDS: -5.25 Total: -104.13 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 2.70 SS G_CDS: -1.14 Total: 1.56 kcal Total: -63.39 -0.71 -64.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043239465.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.977 kcal (2) G-P(sol) polarization free energy of solvation -63.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds