Wall clock time and date at job start Mon Mar 30 2020 07:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33388 * 125.19688 * 2 1 4 4 C 1.38425 * 114.91749 * 180.20941 * 3 2 1 5 5 C 1.33397 * 114.92011 * 359.49290 * 4 3 2 6 6 C 1.50700 * 125.20171 * 180.28781 * 5 4 3 7 7 H 1.08997 * 109.47113 * 20.00692 * 6 5 4 8 8 C 1.52999 * 109.47218 * 259.99832 * 6 5 4 9 9 H 1.08990 * 109.47443 * 300.40733 * 8 6 5 10 10 C 1.53004 * 109.46572 * 60.41059 * 8 6 5 11 11 N 1.46899 * 109.47055 * 180.40616 * 8 6 5 12 12 N 1.46905 * 109.46627 * 140.00182 * 6 5 4 13 13 C 1.46898 * 110.99869 * 204.55304 * 12 6 5 14 14 C 1.46903 * 110.99973 * 80.60120 * 12 6 5 15 15 C 1.50700 * 109.47160 * 196.71024 * 14 12 6 16 16 H 1.08005 * 119.99873 * 359.97438 * 15 14 12 17 17 C 1.37877 * 119.99958 * 179.97438 * 15 14 12 18 18 N 1.31510 * 120.00250 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99866 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46801 * 90.00017 * 19 17 15 21 21 H 1.48500 * 109.46836 * 209.99931 * 19 17 15 22 22 H 1.48500 * 109.47133 * 329.99977 * 19 17 15 23 23 S 1.75883 * 109.59350 * 0.27122 * 5 4 3 24 24 H 1.09006 * 109.46845 * 180.28378 * 1 2 3 25 25 H 1.08996 * 109.47419 * 300.28454 * 1 2 3 26 26 H 1.09004 * 109.47482 * 60.28539 * 1 2 3 27 27 H 1.07997 * 122.54481 * 359.97438 * 3 2 1 28 28 H 1.08004 * 122.54494 * 179.75823 * 4 3 2 29 29 H 1.09001 * 109.47382 * 60.00228 * 10 8 6 30 30 H 1.09001 * 109.46434 * 179.97438 * 10 8 6 31 31 H 1.08997 * 109.47232 * 299.99403 * 10 8 6 32 32 H 1.00901 * 111.00301 * 312.72575 * 11 8 6 33 33 H 1.00900 * 111.00152 * 76.67473 * 11 8 6 34 34 H 1.08994 * 109.47147 * 60.00239 * 13 12 6 35 35 H 1.09000 * 109.46828 * 180.02562 * 13 12 6 36 36 H 1.08998 * 109.47388 * 300.00116 * 13 12 6 37 37 H 1.08998 * 109.46787 * 316.70538 * 14 12 6 38 38 H 1.08999 * 109.47308 * 76.70345 * 14 12 6 39 39 H 0.96995 * 120.00585 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2758 1.0900 0.0000 4 6 3.6379 0.8430 -0.0046 5 6 3.9751 -0.4476 0.0024 6 6 5.3861 -0.9768 0.0056 7 1 6.0653 -0.1984 0.3533 8 6 5.7761 -1.3981 -1.4126 9 1 5.0925 -2.1714 -1.7629 10 6 5.6967 -0.1870 -2.3442 11 7 7.1481 -1.9230 -1.4076 12 7 5.4716 -2.1375 0.9021 13 6 6.8438 -2.3244 1.3919 14 6 4.9793 -3.3523 0.2389 15 6 4.6939 -4.4094 1.2744 16 1 4.8619 -4.1998 2.3205 17 6 4.2184 -5.6440 0.8863 18 7 4.0144 -5.8994 -0.3875 19 14 3.8654 -6.9546 2.1699 20 1 2.4579 -6.8327 2.6275 21 1 4.0782 -8.2989 1.5761 22 1 4.7793 -6.7738 3.3262 23 16 2.5210 -1.4371 0.0077 24 1 -0.3633 -1.0277 0.0051 25 1 -0.3634 0.5182 0.8874 26 1 -0.3634 0.5094 -0.8925 27 1 1.8668 2.0895 -0.0004 28 1 4.3720 1.6351 -0.0090 29 1 6.3804 0.5863 -1.9939 30 1 5.9750 -0.4870 -3.3545 31 1 4.6787 0.2025 -2.3479 32 1 7.7679 -1.3103 -0.8992 33 1 7.1759 -2.8587 -1.0313 34 1 7.1583 -1.4359 1.9395 35 1 6.8789 -3.1903 2.0529 36 1 7.5126 -2.4858 0.5465 37 1 4.0645 -3.1227 -0.3074 38 1 5.7351 -3.7188 -0.4557 39 1 3.6795 -6.7678 -0.6606 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043239468.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:25 Heat of formation + Delta-G solvation = 23.737651 kcal Electronic energy + Delta-G solvation = -19257.819312 eV Core-core repulsion = 16519.471934 eV Total energy + Delta-G solvation = -2738.347378 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.47402 -38.36481 -35.48482 -34.22678 -33.15044 -30.54552 -29.53027 -28.50858 -26.60459 -25.09782 -23.58842 -22.95166 -21.06651 -19.67353 -18.63957 -17.56789 -17.08161 -16.86068 -16.31471 -16.13037 -15.52831 -14.95301 -14.88026 -14.59761 -14.17363 -14.00812 -13.76158 -13.42693 -13.17979 -13.07462 -12.95684 -12.78711 -12.66430 -12.55806 -12.52943 -12.32503 -12.15808 -12.02925 -11.51589 -11.37712 -11.03842 -10.51904 -10.23958 -9.24576 -9.21093 -8.61501 -8.16478 -6.25370 0.27267 0.93137 1.38479 1.39694 1.42199 1.49818 1.97666 2.39959 3.14931 3.31615 3.51511 3.81436 4.05989 4.14911 4.18937 4.45441 4.49513 4.55692 4.60973 4.66210 4.74908 4.79302 4.88173 4.92345 5.06583 5.10372 5.14137 5.24925 5.29264 5.30208 5.41713 5.50945 5.66270 5.82911 6.03576 6.11677 6.34573 6.46821 6.60850 6.88701 7.42742 8.91913 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015781 B = 0.008094 C = 0.006080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.803837 B = 3458.437325 C = 4604.144479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.216 4.216 3 C -0.145 4.145 4 C -0.139 4.139 5 C -0.159 4.159 6 C 0.123 3.877 7 H 0.105 0.895 8 C 0.069 3.931 9 H 0.046 0.954 10 C -0.126 4.126 11 N -0.840 5.840 12 N -0.547 5.547 13 C 0.023 3.977 14 C 0.208 3.792 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.010 3.990 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.267 1.267 23 S 0.081 5.919 24 H 0.055 0.945 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.159 0.841 28 H 0.157 0.843 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.346 0.654 33 H 0.340 0.660 34 H 0.077 0.923 35 H 0.054 0.946 36 H 0.035 0.965 37 H 0.022 0.978 38 H -0.022 1.022 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.534 14.465 -0.293 14.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.333 4.333 3 C -0.175 4.175 4 C -0.170 4.170 5 C -0.278 4.278 6 C 0.011 3.989 7 H 0.123 0.877 8 C -0.045 4.045 9 H 0.065 0.935 10 C -0.184 4.184 11 N -0.374 5.374 12 N -0.271 5.271 13 C -0.126 4.126 14 C 0.081 3.919 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.189 4.189 18 N -0.567 5.567 19 Si 0.781 3.219 20 H -0.203 1.203 21 H -0.208 1.208 22 H -0.192 1.192 23 S 0.346 5.654 24 H 0.074 0.926 25 H 0.106 0.894 26 H 0.108 0.892 27 H 0.177 0.823 28 H 0.175 0.825 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.054 0.946 37 H 0.040 0.960 38 H -0.004 1.004 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.188 12.917 -0.781 12.995 hybrid contribution 0.385 -0.074 0.857 0.942 sum -0.803 12.843 0.075 12.869 Atomic orbital electron populations 1.20333 0.86712 1.02610 1.03859 1.25250 1.01367 0.96852 1.09859 1.20179 0.92501 0.99654 1.05158 1.20198 0.96948 0.95024 1.04841 1.24396 0.97411 0.96520 1.09456 1.21019 0.91356 0.93823 0.92740 0.87739 1.21977 0.90121 0.97723 0.94639 0.93521 1.21663 1.01904 0.96206 0.98665 1.59079 1.07730 1.07175 1.63425 1.62227 1.22422 1.04405 1.38009 1.22584 0.88175 1.02111 0.99722 1.19547 0.93427 0.86148 0.92735 1.21400 1.43019 0.97422 0.93846 0.92822 1.25712 0.95600 1.00513 0.97071 1.70057 1.46711 1.23528 1.16356 0.85589 0.78597 0.78332 0.79355 1.20344 1.20810 1.19163 1.85781 0.98021 1.09277 1.72271 0.92582 0.89444 0.89208 0.82308 0.82528 0.91005 0.92650 0.92234 0.83865 0.84366 0.90432 0.92667 0.94639 0.96027 1.00417 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.38 71.24 0.74 -1.04 16 2 C -0.22 -6.52 6.51 24.59 0.16 -6.36 16 3 C -0.15 -3.85 10.05 21.22 0.21 -3.64 16 4 C -0.14 -3.91 9.26 21.22 0.20 -3.72 16 5 C -0.16 -5.48 4.48 24.59 0.11 -5.37 16 6 C 0.12 4.18 1.92 44.17 0.08 4.27 16 7 H 0.10 3.03 7.79 -2.39 -0.02 3.01 16 8 C 0.07 2.36 2.37 44.92 0.11 2.47 16 9 H 0.05 2.03 6.38 -2.39 -0.02 2.01 16 10 C -0.13 -3.49 9.21 71.98 0.66 -2.83 16 11 N -0.84 -27.07 8.35 -168.68 -1.41 -28.48 16 12 N -0.55 -22.41 4.47 -906.05 -4.05 -26.47 16 13 C 0.02 0.79 8.94 127.69 1.14 1.93 16 14 C 0.21 10.42 2.86 85.56 0.24 10.67 16 15 C -0.52 -28.86 8.56 25.60 0.22 -28.64 16 16 H 0.05 3.01 7.57 -2.91 -0.02 2.99 16 17 C 0.01 0.54 5.46 84.66 0.46 1.01 16 18 N -0.93 -54.90 13.29 21.45 0.28 -54.62 16 19 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 23 S 0.08 3.21 20.24 -56.49 -1.14 2.07 16 24 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 25 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.16 3.15 8.06 -2.91 -0.02 3.12 16 28 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 29 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.06 1.65 6.70 -2.39 -0.02 1.64 16 32 H 0.35 9.23 7.90 -89.69 -0.71 8.53 16 33 H 0.34 12.60 5.15 -89.69 -0.46 12.14 16 34 H 0.08 2.24 8.06 -2.39 -0.02 2.22 16 35 H 0.05 2.17 7.26 -2.39 -0.02 2.15 16 36 H 0.04 1.15 4.29 -2.39 -0.01 1.14 16 37 H 0.02 1.19 4.55 -5.98 -0.03 1.16 16 38 H -0.02 -1.16 5.56 -2.39 -0.01 -1.17 16 39 H 0.26 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -63.38 313.55 -0.08 -63.45 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: -0.12 Total: 28.70 kcal Atomic # 6 Polarization: -35.60 SS G_CDS: 4.34 Total: -31.26 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -5.18 Total: -109.56 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -1.14 Total: 2.07 kcal Total: -63.38 -0.08 -63.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043239468.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.191 kcal (2) G-P(sol) polarization free energy of solvation -63.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds