Wall clock time and date at job start Mon Mar 30 2020 07:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33387 * 125.20165 * 2 1 4 4 C 1.38429 * 114.92177 * 180.02562 * 3 2 1 5 5 C 1.33386 * 114.91581 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.20203 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46553 * 19.98901 * 6 5 4 8 8 C 1.52999 * 109.46620 * 259.99697 * 6 5 4 9 9 H 1.09001 * 109.46716 * 179.74284 * 8 6 5 10 10 C 1.52999 * 109.47309 * 59.74633 * 8 6 5 11 11 N 1.46896 * 109.47396 * 299.74140 * 8 6 5 12 12 N 1.46897 * 109.47399 * 139.99529 * 6 5 4 13 13 C 1.46900 * 110.99771 * 305.83823 * 12 6 5 14 14 C 1.46900 * 110.99659 * 181.88401 * 12 6 5 15 15 C 1.50703 * 109.46738 * 194.01091 * 14 12 6 16 16 H 1.08002 * 120.00207 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99849 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00310 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46728 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46958 * 120.00477 * 19 17 15 22 22 H 1.48499 * 109.47120 * 240.00624 * 19 17 15 23 23 S 1.75883 * 125.20241 * 180.32949 * 2 1 3 24 24 H 1.08999 * 109.47348 * 89.99272 * 1 2 3 25 25 H 1.09002 * 109.47033 * 209.99668 * 1 2 3 26 26 H 1.09000 * 109.46775 * 329.98937 * 1 2 3 27 27 H 1.08001 * 122.54464 * 0.06764 * 3 2 1 28 28 H 1.07995 * 122.54340 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47395 * 54.46771 * 10 8 6 30 30 H 1.09004 * 109.46847 * 174.46839 * 10 8 6 31 31 H 1.09003 * 109.47084 * 294.46855 * 10 8 6 32 32 H 1.00904 * 111.00151 * 300.00515 * 11 8 6 33 33 H 1.00897 * 111.00149 * 63.95521 * 11 8 6 34 34 H 1.08996 * 109.47136 * 296.04580 * 13 12 6 35 35 H 1.09000 * 109.47215 * 56.04836 * 13 12 6 36 36 H 1.08999 * 109.46923 * 176.04968 * 13 12 6 37 37 H 1.08992 * 109.47196 * 314.00900 * 14 12 6 38 38 H 1.09002 * 109.46907 * 74.01908 * 14 12 6 39 39 H 0.97003 * 120.00566 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3861 -0.9771 -0.0029 7 1 6.0657 -0.2007 0.3484 8 6 5.7744 -1.3900 -1.4240 9 1 6.7966 -1.7686 -1.4258 10 6 5.6783 -0.1772 -2.3518 11 7 4.8623 -2.4405 -1.8953 12 7 5.4726 -2.1429 0.8867 13 6 4.9745 -1.8181 2.2300 14 6 6.8465 -2.6596 0.9452 15 6 6.8415 -4.0298 1.5725 16 1 5.9107 -4.4727 1.8950 17 6 8.0250 -4.7185 1.7337 18 7 9.1582 -4.1795 1.3405 19 14 8.0187 -6.4174 2.5106 20 1 6.6265 -6.7953 2.8630 21 1 8.5704 -7.4040 1.5476 22 1 8.8541 -6.4033 3.7382 23 16 2.5210 -1.4372 -0.0083 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.8670 2.0895 0.0011 28 1 4.3721 1.6350 -0.0010 29 1 6.2796 0.6375 -1.9484 30 1 6.0481 -0.4464 -3.3412 31 1 4.6385 0.1414 -2.4268 32 1 4.9073 -3.2530 -1.2986 33 1 3.9170 -2.0945 -1.9641 34 1 5.6143 -1.0597 2.6811 35 1 3.9556 -1.4378 2.1576 36 1 4.9843 -2.7159 2.8480 37 1 7.2539 -2.7233 -0.0637 38 1 7.4619 -1.9882 1.5440 39 1 9.9910 -4.6638 1.4543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043239472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:32 Heat of formation + Delta-G solvation = 30.974721 kcal Electronic energy + Delta-G solvation = -19044.678102 eV Core-core repulsion = 16306.644547 eV Total energy + Delta-G solvation = -2738.033555 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.87850 -37.00436 -34.37804 -32.53143 -31.74006 -28.79050 -27.97533 -26.88466 -25.62473 -23.50362 -22.49412 -21.31814 -19.59863 -18.52360 -16.71702 -16.20139 -15.63049 -15.27970 -14.75668 -14.44746 -14.28450 -13.81185 -13.66870 -13.34147 -13.03763 -12.66694 -12.23654 -12.14996 -12.04179 -11.88865 -11.52566 -11.44392 -11.30101 -11.01291 -10.89120 -10.78583 -10.59289 -10.45448 -10.24126 -9.80384 -9.26578 -8.53479 -8.44556 -8.16506 -7.90409 -7.38896 -6.04986 -4.06167 1.17652 1.81773 2.28127 2.89177 3.30194 3.37972 3.42411 4.39372 4.71401 4.90557 5.00328 5.22260 5.24280 5.31254 5.44129 5.47887 5.60468 5.71353 5.76334 5.82635 5.86984 5.92665 6.08614 6.13275 6.29247 6.30622 6.42569 6.42950 6.56446 6.65152 6.71879 7.20005 7.26822 7.68057 7.79081 8.00987 8.08272 8.11232 8.46340 9.01063 9.58218 11.05783 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.005583 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.915805 B = 5014.173409 C = 5476.779327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.210 4.210 3 C -0.137 4.137 4 C -0.150 4.150 5 C -0.147 4.147 6 C 0.110 3.890 7 H 0.050 0.950 8 C 0.098 3.902 9 H 0.096 0.904 10 C -0.142 4.142 11 N -0.835 5.835 12 N -0.533 5.533 13 C 0.034 3.966 14 C 0.189 3.811 15 C -0.505 4.505 16 H 0.063 0.937 17 C 0.057 3.943 18 N -0.897 5.897 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.286 1.286 23 S 0.140 5.860 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.132 0.868 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.358 0.642 33 H 0.327 0.673 34 H 0.011 0.989 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.038 0.962 38 H -0.009 1.009 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.599 9.789 -3.696 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.327 4.327 3 C -0.168 4.168 4 C -0.180 4.180 5 C -0.265 4.265 6 C -0.003 4.003 7 H 0.067 0.933 8 C -0.015 4.015 9 H 0.113 0.887 10 C -0.200 4.200 11 N -0.367 5.367 12 N -0.258 5.258 13 C -0.114 4.114 14 C 0.064 3.936 15 C -0.543 4.543 16 H 0.082 0.918 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.212 1.212 23 S 0.404 5.596 24 H 0.088 0.912 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.150 0.850 29 H 0.072 0.928 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.173 0.827 33 H 0.140 0.860 34 H 0.030 0.970 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.009 0.991 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -13.538 7.800 -4.574 16.280 hybrid contribution 0.602 1.533 1.863 2.486 sum -12.936 9.333 -2.712 16.180 Atomic orbital electron populations 1.20258 0.88391 1.02698 1.02290 1.24650 0.99930 0.97262 1.10885 1.19925 0.92834 0.98810 1.05230 1.19982 0.96015 0.95814 1.06193 1.24576 0.98699 0.96102 1.07128 1.21070 0.88702 0.93402 0.97132 0.93277 1.21502 0.98601 0.92064 0.89335 0.88663 1.21816 1.01524 0.96994 0.99669 1.59132 1.10890 1.09245 1.57384 1.62204 1.27431 1.26853 1.09303 1.22304 0.97967 1.00329 0.90839 1.19860 0.81295 0.94882 0.97547 1.21130 0.93242 1.00726 1.39237 0.91845 1.24966 0.95458 0.98214 0.95844 1.69958 0.98033 1.38083 1.47628 0.86454 0.78055 0.84145 0.78833 1.19688 1.20994 1.21211 1.84513 0.95232 1.07837 1.71973 0.91160 0.91565 0.91092 0.85192 0.85028 0.92758 0.92104 0.92918 0.82692 0.85964 0.97002 0.93198 0.90706 0.94376 0.99091 0.92971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.38 36.01 0.37 -0.34 16 2 C -0.21 -2.59 6.51 -36.00 -0.23 -2.83 16 3 C -0.14 -1.71 10.05 -41.21 -0.41 -2.12 16 4 C -0.15 -2.07 9.42 -41.21 -0.39 -2.45 16 5 C -0.15 -2.26 2.55 -36.00 -0.09 -2.35 16 6 C 0.11 1.94 1.81 -68.86 -0.12 1.81 16 7 H 0.05 0.91 8.12 -51.93 -0.42 0.49 16 8 C 0.10 1.69 2.96 -67.72 -0.20 1.49 16 9 H 0.10 1.88 6.19 -51.93 -0.32 1.56 16 10 C -0.14 -2.04 8.98 37.16 0.33 -1.70 16 11 N -0.83 -14.36 9.06 -4.67 -0.04 -14.41 16 12 N -0.53 -10.91 3.70 -237.73 -0.88 -11.79 16 13 C 0.03 0.68 9.00 60.06 0.54 1.22 16 14 C 0.19 4.72 4.59 -4.97 -0.02 4.69 16 15 C -0.50 -13.77 8.56 -34.44 -0.29 -14.06 16 16 H 0.06 1.73 7.38 -52.49 -0.39 1.34 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.27 13.29 55.43 0.74 -25.53 16 19 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 S 0.14 2.01 19.90 -107.50 -2.14 -0.13 16 24 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.13 1.66 8.06 -52.49 -0.42 1.24 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.73 7.05 -51.93 -0.37 0.37 16 32 H 0.36 6.85 8.40 -39.29 -0.33 6.52 16 33 H 0.33 5.18 6.44 -39.29 -0.25 4.93 16 34 H 0.01 0.23 8.12 -51.93 -0.42 -0.19 16 35 H 0.05 0.88 5.78 -51.93 -0.30 0.58 16 36 H 0.07 1.55 7.14 -51.93 -0.37 1.18 16 37 H 0.04 1.01 5.77 -51.93 -0.30 0.71 16 38 H -0.01 -0.24 8.06 -51.93 -0.42 -0.66 16 39 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -28.37 320.68 -9.12 -37.49 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -5.98 Total: 8.25 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: -0.62 Total: -15.17 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.19 Total: -51.73 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.14 Total: -0.13 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.37 -9.12 -37.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043239472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.467 kcal (2) G-P(sol) polarization free energy of solvation -28.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds