Wall clock time and date at job start Mon Mar 30 2020 07:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33387 * 125.20165 * 2 1 4 4 C 1.38429 * 114.92177 * 180.02562 * 3 2 1 5 5 C 1.33386 * 114.91581 * 0.02562 * 4 3 2 6 6 C 1.50707 * 125.20203 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46553 * 19.98901 * 6 5 4 8 8 C 1.52999 * 109.46620 * 259.99697 * 6 5 4 9 9 H 1.09001 * 109.46716 * 179.74284 * 8 6 5 10 10 C 1.52999 * 109.47309 * 59.74633 * 8 6 5 11 11 N 1.46896 * 109.47396 * 299.74140 * 8 6 5 12 12 N 1.46897 * 109.47399 * 139.99529 * 6 5 4 13 13 C 1.46900 * 110.99771 * 305.83823 * 12 6 5 14 14 C 1.46900 * 110.99659 * 181.88401 * 12 6 5 15 15 C 1.50703 * 109.46738 * 194.01091 * 14 12 6 16 16 H 1.08002 * 120.00207 * 0.02562 * 15 14 12 17 17 C 1.37873 * 119.99849 * 179.97438 * 15 14 12 18 18 N 1.31509 * 120.00310 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 120.00030 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.46728 * 0.02562 * 19 17 15 21 21 H 1.48498 * 109.46958 * 120.00477 * 19 17 15 22 22 H 1.48499 * 109.47120 * 240.00624 * 19 17 15 23 23 S 1.75883 * 125.20241 * 180.32949 * 2 1 3 24 24 H 1.08999 * 109.47348 * 89.99272 * 1 2 3 25 25 H 1.09002 * 109.47033 * 209.99668 * 1 2 3 26 26 H 1.09000 * 109.46775 * 329.98937 * 1 2 3 27 27 H 1.08001 * 122.54464 * 0.06764 * 3 2 1 28 28 H 1.07995 * 122.54340 * 179.97438 * 4 3 2 29 29 H 1.08995 * 109.47395 * 54.46771 * 10 8 6 30 30 H 1.09004 * 109.46847 * 174.46839 * 10 8 6 31 31 H 1.09003 * 109.47084 * 294.46855 * 10 8 6 32 32 H 1.00904 * 111.00151 * 300.00515 * 11 8 6 33 33 H 1.00897 * 111.00149 * 63.95521 * 11 8 6 34 34 H 1.08996 * 109.47136 * 296.04580 * 13 12 6 35 35 H 1.09000 * 109.47215 * 56.04836 * 13 12 6 36 36 H 1.08999 * 109.46923 * 176.04968 * 13 12 6 37 37 H 1.08992 * 109.47196 * 314.00900 * 14 12 6 38 38 H 1.09002 * 109.46907 * 74.01908 * 14 12 6 39 39 H 0.97003 * 120.00566 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8429 -0.0006 5 6 3.9751 -0.4477 -0.0016 6 6 5.3861 -0.9771 -0.0029 7 1 6.0657 -0.2007 0.3484 8 6 5.7744 -1.3900 -1.4240 9 1 6.7966 -1.7686 -1.4258 10 6 5.6783 -0.1772 -2.3518 11 7 4.8623 -2.4405 -1.8953 12 7 5.4726 -2.1429 0.8867 13 6 4.9745 -1.8181 2.2300 14 6 6.8465 -2.6596 0.9452 15 6 6.8415 -4.0298 1.5725 16 1 5.9107 -4.4727 1.8950 17 6 8.0250 -4.7185 1.7337 18 7 9.1582 -4.1795 1.3405 19 14 8.0187 -6.4174 2.5106 20 1 6.6265 -6.7953 2.8630 21 1 8.5704 -7.4040 1.5476 22 1 8.8541 -6.4033 3.7382 23 16 2.5210 -1.4372 -0.0083 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8899 0.5140 27 1 1.8670 2.0895 0.0011 28 1 4.3721 1.6350 -0.0010 29 1 6.2796 0.6375 -1.9484 30 1 6.0481 -0.4464 -3.3412 31 1 4.6385 0.1414 -2.4268 32 1 4.9073 -3.2530 -1.2986 33 1 3.9170 -2.0945 -1.9641 34 1 5.6143 -1.0597 2.6811 35 1 3.9556 -1.4378 2.1576 36 1 4.9843 -2.7159 2.8480 37 1 7.2539 -2.7233 -0.0637 38 1 7.4619 -1.9882 1.5440 39 1 9.9910 -4.6638 1.4543 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043239472.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:44:32 Heat of formation + Delta-G solvation = 12.929104 kcal Electronic energy + Delta-G solvation = -19045.460619 eV Core-core repulsion = 16306.644547 eV Total energy + Delta-G solvation = -2738.816072 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.24238 -38.21004 -35.99637 -34.50268 -32.80873 -30.12665 -29.59652 -28.41142 -27.08380 -25.02998 -23.64985 -22.96309 -21.03769 -19.65568 -18.59597 -17.56268 -17.06927 -16.83818 -16.19058 -16.09322 -15.72960 -15.03228 -14.96881 -14.68622 -14.23706 -14.00330 -13.82698 -13.50134 -13.28757 -13.17031 -13.00515 -12.79263 -12.65692 -12.53742 -12.45674 -12.31055 -12.21117 -12.09297 -11.53633 -11.45760 -11.30449 -10.58898 -9.80533 -9.25813 -9.20222 -9.05926 -8.19951 -6.28942 0.11240 0.73911 1.21846 1.40286 1.41678 1.54388 1.86463 2.40068 3.11235 3.16316 3.68460 3.83476 4.05830 4.13681 4.35893 4.40546 4.46775 4.49991 4.56428 4.65313 4.68009 4.80026 4.82910 4.91714 4.99563 5.09769 5.14090 5.19076 5.24681 5.25784 5.33982 5.42676 5.63651 5.69422 6.03095 6.24698 6.30065 6.53436 6.67288 6.85998 7.40339 8.91090 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026140 B = 0.005583 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.915805 B = 5014.173409 C = 5476.779327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.192 4.192 3 C -0.146 4.146 4 C -0.135 4.135 5 C -0.175 4.175 6 C 0.116 3.884 7 H 0.037 0.963 8 C 0.099 3.901 9 H 0.061 0.939 10 C -0.131 4.131 11 N -0.832 5.832 12 N -0.530 5.530 13 C 0.042 3.958 14 C 0.207 3.793 15 C -0.516 4.516 16 H 0.062 0.938 17 C 0.004 3.996 18 N -0.933 5.933 19 Si 0.966 3.034 20 H -0.264 1.264 21 H -0.280 1.280 22 H -0.281 1.281 23 S 0.111 5.889 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.091 0.909 27 H 0.159 0.841 28 H 0.142 0.858 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.345 0.655 33 H 0.336 0.664 34 H 0.004 0.996 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.019 0.981 38 H -0.043 1.043 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.968 10.599 -3.756 19.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.310 4.310 3 C -0.175 4.175 4 C -0.166 4.166 5 C -0.293 4.293 6 C 0.003 3.997 7 H 0.055 0.945 8 C -0.015 4.015 9 H 0.079 0.921 10 C -0.189 4.189 11 N -0.363 5.363 12 N -0.254 5.254 13 C -0.107 4.107 14 C 0.081 3.919 15 C -0.555 4.555 16 H 0.080 0.920 17 C -0.194 4.194 18 N -0.574 5.574 19 Si 0.791 3.209 20 H -0.188 1.188 21 H -0.205 1.205 22 H -0.207 1.207 23 S 0.375 5.625 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.109 0.891 27 H 0.177 0.823 28 H 0.160 0.840 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.158 0.842 33 H 0.151 0.849 34 H 0.023 0.977 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.037 0.963 38 H -0.026 1.026 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.932 8.632 -4.643 18.706 hybrid contribution 1.250 1.377 1.860 2.630 sum -14.682 10.009 -2.784 17.986 Atomic orbital electron populations 1.20414 0.85957 1.03887 1.03604 1.25062 1.01325 0.95792 1.08786 1.20185 0.91988 1.00196 1.05179 1.20247 0.97229 0.95270 1.03880 1.24201 0.97436 0.96932 1.10694 1.20958 0.90594 0.91775 0.96339 0.94534 1.21436 0.96731 0.93108 0.90180 0.92140 1.21720 1.02333 0.95782 0.99038 1.59120 1.11587 1.08778 1.56803 1.62087 1.24262 1.28877 1.10215 1.22242 0.99010 0.99405 0.90064 1.19464 0.83217 0.93750 0.95428 1.21416 0.93244 1.01654 1.39160 0.92023 1.25835 0.95037 1.02204 0.96294 1.70082 0.98692 1.39799 1.48816 0.85377 0.78369 0.79209 0.77897 1.18806 1.20536 1.20689 1.84600 0.95648 1.09514 1.72778 0.89681 0.91184 0.89080 0.82348 0.84000 0.91713 0.91665 0.91970 0.84169 0.84870 0.97697 0.90870 0.92204 0.96271 1.02558 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.17 10.38 71.24 0.74 -0.43 16 2 C -0.19 -4.13 6.51 24.59 0.16 -3.96 16 3 C -0.15 -3.10 10.05 21.22 0.21 -2.89 16 4 C -0.14 -3.41 9.42 21.22 0.20 -3.21 16 5 C -0.18 -5.19 2.55 24.59 0.06 -5.13 16 6 C 0.12 4.16 1.81 44.17 0.08 4.24 16 7 H 0.04 1.40 8.12 -2.39 -0.02 1.38 16 8 C 0.10 3.48 2.96 44.92 0.13 3.61 16 9 H 0.06 2.55 6.19 -2.39 -0.01 2.53 16 10 C -0.13 -3.66 8.98 71.98 0.65 -3.01 16 11 N -0.83 -29.00 9.06 -168.69 -1.53 -30.53 16 12 N -0.53 -22.40 3.70 -906.05 -3.35 -25.76 16 13 C 0.04 1.65 9.00 127.69 1.15 2.80 16 14 C 0.21 10.88 4.59 85.56 0.39 11.27 16 15 C -0.52 -28.97 8.56 25.60 0.22 -28.75 16 16 H 0.06 3.42 7.38 -2.91 -0.02 3.39 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -56.12 13.29 21.44 0.28 -55.84 16 19 Si 0.97 44.54 29.54 68.60 2.03 46.56 16 20 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 23 S 0.11 3.00 19.90 -56.49 -1.12 1.88 16 24 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 28 H 0.14 3.24 8.06 -2.91 -0.02 3.21 16 29 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.06 1.62 7.05 -2.39 -0.02 1.61 16 32 H 0.35 13.59 8.40 -89.69 -0.75 12.84 16 33 H 0.34 10.55 6.44 -89.70 -0.58 9.97 16 34 H 0.00 0.18 8.12 -2.39 -0.02 0.16 16 35 H 0.07 2.56 5.78 -2.39 -0.01 2.55 16 36 H 0.06 2.53 7.14 -2.39 -0.02 2.51 16 37 H 0.02 1.08 5.77 -2.39 -0.01 1.07 16 38 H -0.04 -2.52 8.06 -2.39 -0.02 -2.54 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -62.12 320.68 0.48 -61.64 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: -0.28 Total: 26.78 kcal Atomic # 6 Polarization: -29.20 SS G_CDS: 4.46 Total: -24.74 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.60 Total: -112.13 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.56 kcal Atomic # 16 Polarization: 3.00 SS G_CDS: -1.12 Total: 1.88 kcal Total: -62.12 0.48 -61.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043239472.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.570 kcal (2) G-P(sol) polarization free energy of solvation -62.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds