Wall clock time and date at job start Mon Mar 30 2020 07:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38418 * 122.54237 * 2 1 4 4 C 1.33392 * 114.92307 * 180.27373 * 3 2 1 5 5 S 1.75888 * 109.58915 * 359.77426 * 4 3 2 6 6 C 1.33383 * 122.53578 * 179.83447 * 2 1 3 7 7 C 1.50707 * 125.20621 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.46928 * 2.86028 * 7 6 2 9 9 C 1.52995 * 109.47293 * 122.85646 * 7 6 2 10 10 H 1.09006 * 109.47259 * 54.74376 * 9 7 6 11 11 C 1.52996 * 109.47504 * 174.74221 * 9 7 6 12 12 N 1.46897 * 109.47404 * 294.74562 * 9 7 6 13 13 N 1.46890 * 109.47052 * 242.86113 * 7 6 2 14 14 C 1.46898 * 111.00469 * 68.59322 * 13 7 6 15 15 C 1.46909 * 111.00112 * 304.63754 * 13 7 6 16 16 C 1.50698 * 109.46872 * 195.17233 * 15 13 7 17 17 H 1.07998 * 120.00457 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99709 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99587 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00050 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47330 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46607 * 120.00170 * 20 18 16 23 23 H 1.48492 * 109.47444 * 239.99961 * 20 18 16 24 24 H 1.08995 * 109.47314 * 270.17077 * 1 2 3 25 25 H 1.09004 * 109.47082 * 30.16479 * 1 2 3 26 26 H 1.08999 * 109.47506 * 150.16536 * 1 2 3 27 27 H 1.08003 * 122.54191 * 0.05057 * 3 2 1 28 28 H 1.07995 * 125.20345 * 179.79867 * 4 3 2 29 29 H 1.08995 * 109.47499 * 174.68832 * 11 9 7 30 30 H 1.08999 * 109.47451 * 294.69503 * 11 9 7 31 31 H 1.09006 * 109.47065 * 54.68837 * 11 9 7 32 32 H 1.00897 * 111.00353 * 176.04903 * 12 9 7 33 33 H 1.00899 * 111.00206 * 299.99808 * 12 9 7 34 34 H 1.08998 * 109.47129 * 60.41296 * 14 13 7 35 35 H 1.09000 * 109.47244 * 180.41251 * 14 13 7 36 36 H 1.09003 * 109.47023 * 300.41426 * 14 13 7 37 37 H 1.09006 * 109.46607 * 315.16645 * 15 13 7 38 38 H 1.08999 * 109.46829 * 75.17008 * 15 13 7 39 39 H 0.96996 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9385 -0.7306 -0.0051 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5193 0.0067 8 1 0.5661 -2.4669 -0.0451 9 6 2.1851 -3.2909 -1.2027 10 1 3.2748 -3.2635 -1.2010 11 6 1.7115 -4.7439 -1.1291 12 7 1.6818 -2.6738 -2.4371 13 7 2.0523 -3.2084 1.2411 14 6 1.3926 -2.6152 2.4120 15 6 3.5127 -3.2012 1.3999 16 6 3.9093 -4.2116 2.4454 17 1 3.1522 -4.7998 2.9425 18 6 5.2388 -4.3849 2.7673 19 7 6.1607 -3.6688 2.1615 20 14 5.7303 -5.6367 4.0636 21 1 4.5146 -6.3074 4.5903 22 1 6.6306 -6.6500 3.4569 23 1 6.4367 -4.9484 5.1737 24 1 -0.3634 0.0031 1.0276 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3634 -0.8914 -0.5112 27 1 1.7966 2.1464 0.0008 28 1 4.3078 1.7821 -0.0098 29 1 2.0099 -5.2697 -2.0360 30 1 2.1613 -5.2292 -0.2630 31 1 0.6257 -4.7678 -1.0357 32 1 2.0700 -3.1255 -3.2516 33 1 0.6732 -2.6870 -2.4628 34 1 0.3116 -2.7032 2.3033 35 1 1.7111 -3.1396 3.3129 36 1 1.6656 -1.5627 2.4884 37 1 3.9826 -3.4575 0.4503 38 1 3.8395 -2.2090 1.7110 39 1 7.0959 -3.7905 2.3882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043247590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:21 Heat of formation + Delta-G solvation = 36.190199 kcal Electronic energy + Delta-G solvation = -19518.730616 eV Core-core repulsion = 16780.923221 eV Total energy + Delta-G solvation = -2737.807395 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.86445 -36.76399 -34.56712 -32.46666 -30.53497 -28.65301 -27.92722 -27.28012 -25.23843 -23.71695 -22.10919 -21.52391 -19.38479 -17.94425 -16.64015 -16.37583 -15.63919 -14.91915 -14.70071 -14.30581 -13.96797 -13.58543 -13.11906 -12.97164 -12.86541 -12.69301 -12.25760 -12.01223 -11.94631 -11.55949 -11.51233 -11.24408 -11.06118 -10.96608 -10.79500 -10.62627 -10.55335 -10.30221 -9.86624 -9.66293 -9.18005 -8.45284 -8.35332 -7.94435 -7.68608 -7.13042 -6.00986 -4.01890 1.67108 2.39662 2.77840 3.25521 3.30660 3.38579 3.42871 4.41840 4.66760 5.13030 5.29000 5.35816 5.39437 5.50818 5.66153 5.72337 5.81289 5.89163 5.93751 5.99424 6.07796 6.14643 6.23445 6.29341 6.39723 6.55853 6.65209 6.72765 6.77988 6.97915 7.09048 7.20632 7.36652 7.48980 7.71896 7.80523 8.05979 8.16248 8.52481 9.04321 9.60987 11.08702 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019650 B = 0.007393 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.594247 B = 3786.324851 C = 4259.636616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.124 4.124 3 C -0.136 4.136 4 C -0.259 4.259 5 S 0.175 5.825 6 C -0.175 4.175 7 C 0.157 3.843 8 H 0.083 0.917 9 C 0.095 3.905 10 H 0.085 0.915 11 C -0.171 4.171 12 N -0.840 5.840 13 N -0.523 5.523 14 C 0.037 3.963 15 C 0.176 3.824 16 C -0.505 4.505 17 H 0.063 0.937 18 C 0.057 3.943 19 N -0.892 5.892 20 Si 0.894 3.106 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.058 0.942 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.123 0.877 28 H 0.150 0.850 29 H 0.040 0.960 30 H 0.084 0.916 31 H 0.046 0.954 32 H 0.338 0.662 33 H 0.332 0.668 34 H 0.044 0.956 35 H 0.074 0.926 36 H 0.017 0.983 37 H 0.033 0.967 38 H 0.015 0.985 39 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.274 5.273 -6.595 12.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C -0.168 4.168 4 C -0.395 4.395 5 S 0.443 5.557 6 C -0.295 4.295 7 C 0.046 3.954 8 H 0.100 0.900 9 C -0.017 4.017 10 H 0.103 0.897 11 C -0.231 4.231 12 N -0.368 5.368 13 N -0.245 5.245 14 C -0.112 4.112 15 C 0.050 3.950 16 C -0.543 4.543 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.531 5.531 20 Si 0.722 3.278 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.212 1.212 24 H 0.077 0.923 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.140 0.860 28 H 0.168 0.832 29 H 0.059 0.941 30 H 0.103 0.897 31 H 0.065 0.935 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.063 0.937 35 H 0.093 0.907 36 H 0.035 0.965 37 H 0.051 0.949 38 H 0.032 0.968 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.473 4.620 -6.369 10.852 hybrid contribution -0.891 0.269 0.612 1.114 sum -8.364 4.889 -5.757 11.270 Atomic orbital electron populations 1.20391 0.90959 1.01720 1.01209 1.18569 0.96550 0.91710 1.06844 1.19785 0.92901 0.98403 1.05688 1.25848 0.99645 1.02039 1.11958 1.85296 1.04740 0.96638 1.69054 1.25161 0.96488 0.99924 1.07961 1.20352 0.98324 0.84979 0.91770 0.89956 1.21465 1.00258 0.91421 0.88559 0.89659 1.22407 1.00801 0.97437 1.02425 1.58821 1.12227 1.61869 1.03876 1.62533 1.12195 1.49871 0.99946 1.22197 0.97032 0.97097 0.94886 1.20092 0.80304 0.96886 0.97717 1.21126 0.91933 1.20449 1.20826 0.91899 1.24960 0.96585 0.96297 0.96639 1.69970 1.00647 1.40329 1.42197 0.86506 0.78499 0.81294 0.81506 1.19761 1.21105 1.21174 0.92312 0.92412 0.92011 0.85953 0.83244 0.94071 0.89678 0.93516 0.85012 0.85617 0.93687 0.90723 0.96474 0.94946 0.96762 0.93040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.11 9.73 36.01 0.35 -0.76 16 2 C -0.12 -2.06 5.80 -106.25 -0.62 -2.67 16 3 C -0.14 -2.21 9.98 -41.21 -0.41 -2.62 16 4 C -0.26 -4.42 11.23 29.04 0.33 -4.09 16 5 S 0.17 3.45 19.04 -107.50 -2.05 1.41 16 6 C -0.18 -3.20 3.71 -36.00 -0.13 -3.33 16 7 C 0.16 2.79 1.81 -68.87 -0.12 2.67 16 8 H 0.08 1.35 6.18 -51.93 -0.32 1.03 16 9 C 0.09 1.58 2.53 -67.72 -0.17 1.41 16 10 H 0.09 1.69 6.06 -51.93 -0.31 1.38 16 11 C -0.17 -2.71 9.17 37.16 0.34 -2.37 16 12 N -0.84 -11.52 8.95 -4.67 -0.04 -11.56 16 13 N -0.52 -10.83 3.79 -237.73 -0.90 -11.73 16 14 C 0.04 0.71 9.22 60.06 0.55 1.26 16 15 C 0.18 4.34 2.99 -4.97 -0.01 4.32 16 16 C -0.50 -13.75 8.52 -34.44 -0.29 -14.04 16 17 H 0.06 1.71 7.48 -52.49 -0.39 1.32 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -25.71 13.29 55.43 0.74 -24.97 16 20 Si 0.89 21.38 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 26 H 0.06 0.78 6.61 -51.93 -0.34 0.44 16 27 H 0.12 1.68 8.06 -52.48 -0.42 1.25 16 28 H 0.15 2.20 8.06 -52.49 -0.42 1.77 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 1.61 7.66 -51.93 -0.40 1.21 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.34 4.07 9.07 -39.29 -0.36 3.71 16 33 H 0.33 3.97 9.00 -39.29 -0.35 3.62 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.07 1.54 7.13 -51.93 -0.37 1.17 16 36 H 0.02 0.34 7.36 -51.93 -0.38 -0.04 16 37 H 0.03 0.86 5.70 -51.93 -0.30 0.56 16 38 H 0.02 0.40 5.59 -42.42 -0.24 0.16 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 319.02 15.07 4.81 4.81 Total: -1.00 -28.96 319.02 -8.62 -37.57 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -5.86 Total: 6.86 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -0.29 Total: -18.75 kcal Atomic # 7 Polarization: -48.05 SS G_CDS: -0.21 Total: -48.26 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -2.05 Total: 1.41 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.96 -8.62 -37.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.764 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds