Wall clock time and date at job start Mon Mar 30 2020 07:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38418 * 122.54237 * 2 1 4 4 C 1.33392 * 114.92307 * 180.27373 * 3 2 1 5 5 S 1.75888 * 109.58915 * 359.77426 * 4 3 2 6 6 C 1.33383 * 122.53578 * 179.83447 * 2 1 3 7 7 C 1.50707 * 125.20621 * 0.02562 * 6 2 1 8 8 H 1.09000 * 109.46928 * 2.86028 * 7 6 2 9 9 C 1.52995 * 109.47293 * 122.85646 * 7 6 2 10 10 H 1.09006 * 109.47259 * 54.74376 * 9 7 6 11 11 C 1.52996 * 109.47504 * 174.74221 * 9 7 6 12 12 N 1.46897 * 109.47404 * 294.74562 * 9 7 6 13 13 N 1.46890 * 109.47052 * 242.86113 * 7 6 2 14 14 C 1.46898 * 111.00469 * 68.59322 * 13 7 6 15 15 C 1.46909 * 111.00112 * 304.63754 * 13 7 6 16 16 C 1.50698 * 109.46872 * 195.17233 * 15 13 7 17 17 H 1.07998 * 120.00457 * 359.97438 * 16 15 13 18 18 C 1.37885 * 119.99709 * 179.97438 * 16 15 13 19 19 N 1.31518 * 119.99587 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00050 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47330 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46607 * 120.00170 * 20 18 16 23 23 H 1.48492 * 109.47444 * 239.99961 * 20 18 16 24 24 H 1.08995 * 109.47314 * 270.17077 * 1 2 3 25 25 H 1.09004 * 109.47082 * 30.16479 * 1 2 3 26 26 H 1.08999 * 109.47506 * 150.16536 * 1 2 3 27 27 H 1.08003 * 122.54191 * 0.05057 * 3 2 1 28 28 H 1.07995 * 125.20345 * 179.79867 * 4 3 2 29 29 H 1.08995 * 109.47499 * 174.68832 * 11 9 7 30 30 H 1.08999 * 109.47451 * 294.69503 * 11 9 7 31 31 H 1.09006 * 109.47065 * 54.68837 * 11 9 7 32 32 H 1.00897 * 111.00353 * 176.04903 * 12 9 7 33 33 H 1.00899 * 111.00206 * 299.99808 * 12 9 7 34 34 H 1.08998 * 109.47129 * 60.41296 * 14 13 7 35 35 H 1.09000 * 109.47244 * 180.41251 * 14 13 7 36 36 H 1.09003 * 109.47023 * 300.41426 * 14 13 7 37 37 H 1.09006 * 109.46607 * 315.16645 * 15 13 7 38 38 H 1.08999 * 109.46829 * 75.17008 * 15 13 7 39 39 H 0.96996 * 119.99717 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5737 0.9900 -0.0058 5 16 3.9385 -0.7306 -0.0051 6 6 2.2244 -1.1245 0.0032 7 6 1.6536 -2.5193 0.0067 8 1 0.5661 -2.4669 -0.0451 9 6 2.1851 -3.2909 -1.2027 10 1 3.2748 -3.2635 -1.2010 11 6 1.7115 -4.7439 -1.1291 12 7 1.6818 -2.6738 -2.4371 13 7 2.0523 -3.2084 1.2411 14 6 1.3926 -2.6152 2.4120 15 6 3.5127 -3.2012 1.3999 16 6 3.9093 -4.2116 2.4454 17 1 3.1522 -4.7998 2.9425 18 6 5.2388 -4.3849 2.7673 19 7 6.1607 -3.6688 2.1615 20 14 5.7303 -5.6367 4.0636 21 1 4.5146 -6.3074 4.5903 22 1 6.6306 -6.6500 3.4569 23 1 6.4367 -4.9484 5.1737 24 1 -0.3634 0.0031 1.0276 25 1 -0.3633 0.8885 -0.5164 26 1 -0.3634 -0.8914 -0.5112 27 1 1.7966 2.1464 0.0008 28 1 4.3078 1.7821 -0.0098 29 1 2.0099 -5.2697 -2.0360 30 1 2.1613 -5.2292 -0.2630 31 1 0.6257 -4.7678 -1.0357 32 1 2.0700 -3.1255 -3.2516 33 1 0.6732 -2.6870 -2.4628 34 1 0.3116 -2.7032 2.3033 35 1 1.7111 -3.1396 3.3129 36 1 1.6656 -1.5627 2.4884 37 1 3.9826 -3.4575 0.4503 38 1 3.8395 -2.2090 1.7110 39 1 7.0959 -3.7905 2.3882 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043247590.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:21 Heat of formation + Delta-G solvation = 16.621947 kcal Electronic energy + Delta-G solvation = -19519.579159 eV Core-core repulsion = 16780.923221 eV Total energy + Delta-G solvation = -2738.655938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.28845 -38.15024 -36.05279 -34.47694 -31.83724 -29.97042 -29.40745 -28.95466 -26.67605 -25.47934 -23.47566 -23.08781 -20.85719 -19.39885 -18.27831 -18.02046 -17.11717 -16.64579 -16.09335 -15.93309 -15.40745 -15.08316 -14.45608 -14.32451 -14.27941 -14.06588 -13.89449 -13.53183 -13.25598 -13.07741 -12.85403 -12.78333 -12.64180 -12.49525 -12.34355 -12.31564 -12.08944 -12.03278 -11.46839 -11.26374 -11.03430 -10.54157 -9.54054 -9.32405 -9.21287 -8.74721 -8.12038 -6.20740 0.31577 0.99904 1.39947 1.41010 1.42637 1.53561 1.96735 2.42724 3.18710 3.25216 3.78432 3.98779 4.10848 4.20267 4.32203 4.52642 4.57176 4.64470 4.67233 4.70905 4.77971 4.84898 4.93464 5.00978 5.11187 5.17993 5.25567 5.30775 5.34535 5.43573 5.44758 5.68005 5.71757 5.85999 6.13695 6.28764 6.40361 6.64579 6.76095 6.94061 7.46302 8.96506 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.019650 B = 0.007393 C = 0.006572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.594247 B = 3786.324851 C = 4259.636616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.119 4.119 3 C -0.134 4.134 4 C -0.252 4.252 5 S 0.075 5.925 6 C -0.181 4.181 7 C 0.160 3.840 8 H 0.106 0.894 9 C 0.103 3.897 10 H 0.046 0.954 11 C -0.163 4.163 12 N -0.835 5.835 13 N -0.528 5.528 14 C 0.042 3.958 15 C 0.199 3.801 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.006 3.994 19 N -0.924 5.924 20 Si 0.958 3.042 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.282 1.282 24 H 0.067 0.933 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.157 0.843 28 H 0.170 0.830 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.348 0.652 33 H 0.347 0.653 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.007 0.993 37 H 0.008 0.992 38 H -0.006 1.006 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.818 5.948 -6.847 14.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.165 4.165 4 C -0.388 4.388 5 S 0.342 5.658 6 C -0.300 4.300 7 C 0.049 3.951 8 H 0.124 0.876 9 C -0.009 4.009 10 H 0.064 0.936 11 C -0.222 4.222 12 N -0.366 5.366 13 N -0.251 5.251 14 C -0.107 4.107 15 C 0.072 3.928 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.193 4.193 19 N -0.564 5.564 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.208 1.208 24 H 0.086 0.914 25 H 0.099 0.901 26 H 0.088 0.912 27 H 0.174 0.826 28 H 0.187 0.813 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.012 0.988 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.047 5.293 -6.633 13.152 hybrid contribution -0.179 0.160 0.623 0.668 sum -10.226 5.453 -6.010 13.055 Atomic orbital electron populations 1.20490 0.88046 1.03366 1.02265 1.19094 0.98563 0.91102 1.04463 1.20218 0.92463 0.99821 1.04025 1.26019 1.00762 1.00060 1.11932 1.85665 1.08276 1.00395 1.71444 1.25096 0.94614 1.00605 1.09692 1.20416 0.99316 0.84799 0.90588 0.87615 1.21200 0.98028 0.92077 0.89632 0.93612 1.22310 1.01717 0.96619 1.01548 1.58698 1.13330 1.61572 1.02995 1.62423 1.09785 1.51200 1.01651 1.22168 0.98823 0.95966 0.93706 1.19634 0.82700 0.94944 0.95485 1.21483 0.92111 1.20919 1.21354 0.92385 1.25770 0.96665 0.98151 0.98678 1.70105 1.00855 1.41823 1.43621 0.85496 0.78231 0.78936 0.78917 1.18973 1.20691 1.20801 0.91390 0.90064 0.91161 0.82560 0.81272 0.92500 0.93307 0.91448 0.83819 0.83941 0.90152 0.92631 0.97448 0.97408 0.98844 0.93060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.85 9.73 71.24 0.69 -1.16 16 2 C -0.12 -3.66 5.80 -20.92 -0.12 -3.78 16 3 C -0.13 -3.99 9.98 21.22 0.21 -3.78 16 4 C -0.25 -8.41 11.23 66.72 0.75 -7.66 16 5 S 0.08 3.09 19.04 -56.49 -1.08 2.02 16 6 C -0.18 -6.49 3.71 24.59 0.09 -6.40 16 7 C 0.16 5.54 1.81 44.17 0.08 5.62 16 8 H 0.11 3.16 6.18 -2.39 -0.01 3.15 16 9 C 0.10 3.43 2.53 44.91 0.11 3.55 16 10 H 0.05 1.92 6.06 -2.38 -0.01 1.90 16 11 C -0.16 -5.04 9.17 71.98 0.66 -4.38 16 12 N -0.84 -21.60 8.95 -168.69 -1.51 -23.11 16 13 N -0.53 -22.02 3.79 -906.04 -3.43 -25.45 16 14 C 0.04 1.60 9.22 127.69 1.18 2.77 16 15 C 0.20 10.25 2.99 85.55 0.26 10.51 16 16 C -0.52 -29.25 8.52 25.60 0.22 -29.03 16 17 H 0.06 3.24 7.48 -2.91 -0.02 3.21 16 18 C 0.01 0.33 5.46 84.66 0.46 0.79 16 19 N -0.92 -55.24 13.29 21.45 0.28 -54.95 16 20 Si 0.96 44.69 29.54 68.60 2.03 46.71 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 24 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.08 1.47 8.13 -2.39 -0.02 1.45 16 26 H 0.07 1.46 6.61 -2.39 -0.02 1.45 16 27 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16 28 H 0.17 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.06 1.54 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.87 7.66 -2.39 -0.02 1.85 16 31 H 0.07 1.78 8.14 -2.38 -0.02 1.76 16 32 H 0.35 7.89 9.07 -89.70 -0.81 7.08 16 33 H 0.35 7.26 9.00 -89.69 -0.81 6.45 16 34 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.05 2.30 7.13 -2.39 -0.02 2.28 16 36 H 0.01 0.28 7.36 -2.39 -0.02 0.26 16 37 H 0.01 0.45 5.70 -2.38 -0.01 0.44 16 38 H -0.01 -0.32 5.59 -8.44 -0.05 -0.37 16 39 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -64.93 319.02 0.29 -64.64 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: -0.59 Total: 23.09 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 4.59 Total: -32.95 kcal Atomic # 7 Polarization: -98.85 SS G_CDS: -4.66 Total: -103.51 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.08 Total: 2.02 kcal Total: -64.93 0.29 -64.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247590.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.263 kcal (2) G-P(sol) polarization free energy of solvation -64.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds