Wall clock time and date at job start Mon Mar 30 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38425 * 122.53328 * 2 1 4 4 C 1.33392 * 114.91454 * 180.02562 * 3 2 1 5 5 S 1.75874 * 109.59626 * 359.75606 * 4 3 2 6 6 C 1.33380 * 122.54232 * 180.02562 * 2 1 3 7 7 C 1.50706 * 125.20494 * 359.95240 * 6 2 1 8 8 H 1.09001 * 109.46953 * 15.00092 * 7 6 2 9 9 C 1.52997 * 109.47238 * 255.00480 * 7 6 2 10 10 H 1.09000 * 109.47325 * 174.99731 * 9 7 6 11 11 C 1.53000 * 109.47060 * 294.99946 * 9 7 6 12 12 N 1.46900 * 109.47045 * 54.99736 * 9 7 6 13 13 N 1.46899 * 109.47101 * 135.00260 * 7 6 2 14 14 C 1.46907 * 110.99900 * 303.95426 * 13 7 6 15 15 C 1.46896 * 110.99916 * 180.02562 * 13 7 6 16 16 C 1.50697 * 109.47308 * 190.00033 * 15 13 7 17 17 H 1.07997 * 119.99843 * 359.97438 * 16 15 13 18 18 C 1.37881 * 120.00175 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99753 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46775 * 90.00064 * 20 18 16 22 22 H 1.48497 * 109.46896 * 209.99978 * 20 18 16 23 23 H 1.48498 * 109.47090 * 330.00257 * 20 18 16 24 24 H 1.09000 * 109.46959 * 269.97161 * 1 2 3 25 25 H 1.09003 * 109.47363 * 29.97883 * 1 2 3 26 26 H 1.09005 * 109.46872 * 149.97902 * 1 2 3 27 27 H 1.07995 * 122.54548 * 0.04473 * 3 2 1 28 28 H 1.08007 * 125.20056 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47227 * 59.99725 * 11 9 7 30 30 H 1.09004 * 109.47014 * 180.02562 * 11 9 7 31 31 H 1.09006 * 109.46717 * 300.00177 * 11 9 7 32 32 H 1.00905 * 110.99973 * 176.04562 * 12 9 7 33 33 H 1.00899 * 111.00123 * 299.99825 * 12 9 7 34 34 H 1.08999 * 109.46835 * 60.00191 * 14 13 7 35 35 H 1.08994 * 109.47019 * 180.02562 * 14 13 7 36 36 H 1.08995 * 109.47138 * 300.00191 * 14 13 7 37 37 H 1.08999 * 109.47037 * 309.99978 * 15 13 7 38 38 H 1.09004 * 109.47416 * 69.99626 * 15 13 7 39 39 H 0.97000 * 119.99803 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0005 5 16 3.9386 -0.7303 0.0060 6 6 2.2245 -1.1244 -0.0005 7 6 1.6538 -2.5192 -0.0001 8 1 0.5973 -2.4795 -0.2654 9 6 1.8070 -3.1326 1.3931 10 1 1.3159 -4.1053 1.4179 11 6 3.2931 -3.3032 1.7146 12 7 1.1893 -2.2466 2.3888 13 7 2.3741 -3.3433 -0.9799 14 6 2.3277 -2.7339 -2.3158 15 6 1.8432 -4.7127 -1.0077 16 6 2.7522 -5.5872 -1.8322 17 1 3.6356 -5.1676 -2.2902 18 6 2.4559 -6.9231 -2.0020 19 7 1.3799 -7.4339 -1.4446 20 14 3.5823 -8.0070 -3.0247 21 1 4.6229 -8.6043 -2.1496 22 1 2.7868 -9.0893 -3.6578 23 1 4.2327 -7.1888 -4.0796 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.7964 2.1464 0.0007 28 1 4.3077 1.7824 -0.0010 29 1 3.7843 -2.3305 1.6898 30 1 3.4023 -3.7406 2.7070 31 1 3.7515 -3.9606 0.9757 32 1 1.2202 -2.6596 3.3090 33 1 1.6275 -1.3378 2.3855 34 1 2.7902 -1.7475 -2.2815 35 1 2.8680 -3.3646 -3.0217 36 1 1.2901 -2.6378 -2.6355 37 1 1.7887 -5.1019 0.0090 38 1 0.8463 -4.7071 -1.4484 39 1 1.1717 -8.3738 -1.5637 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043247591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:25 Heat of formation + Delta-G solvation = 35.897832 kcal Electronic energy + Delta-G solvation = -19343.275468 eV Core-core repulsion = 16605.455395 eV Total energy + Delta-G solvation = -2737.820073 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.04424 -36.93436 -34.54029 -32.49493 -30.77242 -28.81918 -28.02054 -26.71745 -25.86208 -23.68056 -22.34360 -21.45593 -19.41111 -17.98128 -16.83043 -16.27782 -15.87402 -15.19215 -14.82975 -14.61628 -13.82360 -13.47948 -13.29522 -13.11017 -12.92785 -12.69783 -12.38165 -12.07286 -11.87795 -11.71333 -11.64305 -11.34925 -11.22627 -10.91966 -10.70734 -10.67959 -10.59638 -10.25758 -10.21685 -9.75978 -9.21665 -8.51457 -8.39509 -8.16954 -7.91485 -7.27154 -6.03547 -4.04513 1.29361 1.98118 2.41277 2.94417 3.31467 3.37704 3.41223 4.40444 4.66909 5.02575 5.14185 5.26176 5.34432 5.49634 5.60393 5.61288 5.69498 5.76555 5.90714 5.94286 6.10252 6.18566 6.21607 6.29978 6.35931 6.41570 6.58982 6.73549 6.74689 6.81374 6.81956 7.23473 7.33376 7.49514 7.72767 7.79214 8.05780 8.17289 8.52106 9.02946 9.59518 11.07196 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.005864 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.442772 B = 4773.651193 C = 5005.727755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.116 4.116 3 C -0.129 4.129 4 C -0.248 4.248 5 S 0.136 5.864 6 C -0.146 4.146 7 C 0.156 3.844 8 H 0.057 0.943 9 C 0.097 3.903 10 H 0.093 0.907 11 C -0.185 4.185 12 N -0.843 5.843 13 N -0.531 5.531 14 C 0.037 3.963 15 C 0.190 3.810 16 C -0.506 4.506 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.274 1.274 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.130 0.870 28 H 0.154 0.846 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.086 0.914 32 H 0.337 0.663 33 H 0.335 0.665 34 H 0.047 0.953 35 H 0.076 0.924 36 H 0.010 0.990 37 H 0.036 0.964 38 H -0.009 1.009 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.490 14.890 5.334 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.129 4.129 3 C -0.161 4.161 4 C -0.383 4.383 5 S 0.402 5.598 6 C -0.264 4.264 7 C 0.045 3.955 8 H 0.074 0.926 9 C -0.015 4.015 10 H 0.110 0.890 11 C -0.244 4.244 12 N -0.372 5.372 13 N -0.256 5.256 14 C -0.112 4.112 15 C 0.066 3.934 16 C -0.544 4.544 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.537 5.537 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.147 0.853 28 H 0.172 0.828 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.105 0.895 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.066 0.934 35 H 0.094 0.906 36 H 0.029 0.971 37 H 0.054 0.946 38 H 0.009 0.991 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.583 13.754 5.060 14.881 hybrid contribution -0.574 0.274 -0.414 0.759 sum 2.009 14.028 4.646 14.913 Atomic orbital electron populations 1.20455 0.90068 1.01820 1.02283 1.18775 0.97306 0.91427 1.05365 1.19927 0.92885 0.98779 1.04480 1.25745 0.99714 1.00951 1.11920 1.84565 1.06408 0.97221 1.71601 1.24387 0.95495 0.98557 1.07914 1.20090 0.95526 0.86445 0.93431 0.92551 1.21387 0.93479 0.96243 0.90343 0.88955 1.22648 0.97836 1.02511 1.01441 1.58892 1.62435 1.06405 1.09434 1.62227 1.54363 1.03886 1.05140 1.22250 0.98851 0.98563 0.91550 1.19809 0.93765 0.82065 0.97793 1.21134 1.09078 0.93366 1.30854 0.91867 1.24969 0.95383 0.98040 0.96130 1.69955 1.25504 1.13614 1.44651 0.86524 0.80521 0.80138 0.80381 1.20677 1.21363 1.19892 0.91037 0.92541 0.91733 0.85266 0.82790 0.92728 0.93883 0.89487 0.85138 0.85273 0.93393 0.90558 0.97124 0.94571 0.99128 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.82 36.01 0.35 -0.76 16 2 C -0.12 -1.64 5.51 -106.25 -0.59 -2.22 16 3 C -0.13 -1.63 9.98 -41.21 -0.41 -2.04 16 4 C -0.25 -3.09 11.23 29.04 0.33 -2.77 16 5 S 0.14 1.98 19.76 -107.50 -2.12 -0.14 16 6 C -0.15 -2.27 2.41 -36.00 -0.09 -2.36 16 7 C 0.16 2.80 1.80 -68.86 -0.12 2.68 16 8 H 0.06 1.10 6.28 -51.93 -0.33 0.77 16 9 C 0.10 1.64 2.80 -67.71 -0.19 1.46 16 10 H 0.09 1.79 6.47 -51.93 -0.34 1.46 16 11 C -0.18 -3.06 8.85 37.16 0.33 -2.73 16 12 N -0.84 -11.80 9.15 -4.67 -0.04 -11.85 16 13 N -0.53 -11.06 3.53 -237.73 -0.84 -11.90 16 14 C 0.04 0.73 9.06 60.07 0.54 1.28 16 15 C 0.19 4.79 4.40 -4.98 -0.02 4.77 16 16 C -0.51 -13.85 8.46 -34.44 -0.29 -14.14 16 17 H 0.06 1.72 7.12 -52.49 -0.37 1.35 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 20 Si 0.90 21.48 29.54 -169.99 -5.02 16.45 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 26 H 0.06 0.91 6.50 -51.93 -0.34 0.58 16 27 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.15 1.55 8.06 -52.48 -0.42 1.13 16 29 H 0.05 0.84 5.18 -48.22 -0.25 0.59 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.70 7.35 -51.93 -0.38 1.32 16 32 H 0.34 4.13 9.07 -39.29 -0.36 3.77 16 33 H 0.33 4.53 7.57 -39.29 -0.30 4.23 16 34 H 0.05 0.87 6.37 -51.93 -0.33 0.54 16 35 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 36 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 37 H 0.04 0.96 5.93 -51.93 -0.31 0.65 16 38 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 39 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -28.37 316.05 -8.52 -36.89 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -5.74 Total: 6.69 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -0.25 Total: -15.37 kcal Atomic # 7 Polarization: -49.14 SS G_CDS: -0.14 Total: -49.29 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.12 Total: -0.14 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.37 -8.52 -36.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.792 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds