Wall clock time and date at job start Mon Mar 30 2020 07:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38425 * 122.53328 * 2 1 4 4 C 1.33392 * 114.91454 * 180.02562 * 3 2 1 5 5 S 1.75874 * 109.59626 * 359.75606 * 4 3 2 6 6 C 1.33380 * 122.54232 * 180.02562 * 2 1 3 7 7 C 1.50706 * 125.20494 * 359.95240 * 6 2 1 8 8 H 1.09001 * 109.46953 * 15.00092 * 7 6 2 9 9 C 1.52997 * 109.47238 * 255.00480 * 7 6 2 10 10 H 1.09000 * 109.47325 * 174.99731 * 9 7 6 11 11 C 1.53000 * 109.47060 * 294.99946 * 9 7 6 12 12 N 1.46900 * 109.47045 * 54.99736 * 9 7 6 13 13 N 1.46899 * 109.47101 * 135.00260 * 7 6 2 14 14 C 1.46907 * 110.99900 * 303.95426 * 13 7 6 15 15 C 1.46896 * 110.99916 * 180.02562 * 13 7 6 16 16 C 1.50697 * 109.47308 * 190.00033 * 15 13 7 17 17 H 1.07997 * 119.99843 * 359.97438 * 16 15 13 18 18 C 1.37881 * 120.00175 * 179.97438 * 16 15 13 19 19 N 1.31511 * 119.99753 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99914 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.46775 * 90.00064 * 20 18 16 22 22 H 1.48497 * 109.46896 * 209.99978 * 20 18 16 23 23 H 1.48498 * 109.47090 * 330.00257 * 20 18 16 24 24 H 1.09000 * 109.46959 * 269.97161 * 1 2 3 25 25 H 1.09003 * 109.47363 * 29.97883 * 1 2 3 26 26 H 1.09005 * 109.46872 * 149.97902 * 1 2 3 27 27 H 1.07995 * 122.54548 * 0.04473 * 3 2 1 28 28 H 1.08007 * 125.20056 * 179.97438 * 4 3 2 29 29 H 1.09000 * 109.47227 * 59.99725 * 11 9 7 30 30 H 1.09004 * 109.47014 * 180.02562 * 11 9 7 31 31 H 1.09006 * 109.46717 * 300.00177 * 11 9 7 32 32 H 1.00905 * 110.99973 * 176.04562 * 12 9 7 33 33 H 1.00899 * 111.00123 * 299.99825 * 12 9 7 34 34 H 1.08999 * 109.46835 * 60.00191 * 14 13 7 35 35 H 1.08994 * 109.47019 * 180.02562 * 14 13 7 36 36 H 1.08995 * 109.47138 * 300.00191 * 14 13 7 37 37 H 1.08999 * 109.47037 * 309.99978 * 15 13 7 38 38 H 1.09004 * 109.47416 * 69.99626 * 15 13 7 39 39 H 0.97000 * 119.99803 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0005 5 16 3.9386 -0.7303 0.0060 6 6 2.2245 -1.1244 -0.0005 7 6 1.6538 -2.5192 -0.0001 8 1 0.5973 -2.4795 -0.2654 9 6 1.8070 -3.1326 1.3931 10 1 1.3159 -4.1053 1.4179 11 6 3.2931 -3.3032 1.7146 12 7 1.1893 -2.2466 2.3888 13 7 2.3741 -3.3433 -0.9799 14 6 2.3277 -2.7339 -2.3158 15 6 1.8432 -4.7127 -1.0077 16 6 2.7522 -5.5872 -1.8322 17 1 3.6356 -5.1676 -2.2902 18 6 2.4559 -6.9231 -2.0020 19 7 1.3799 -7.4339 -1.4446 20 14 3.5823 -8.0070 -3.0247 21 1 4.6229 -8.6043 -2.1496 22 1 2.7868 -9.0893 -3.6578 23 1 4.2327 -7.1888 -4.0796 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.7964 2.1464 0.0007 28 1 4.3077 1.7824 -0.0010 29 1 3.7843 -2.3305 1.6898 30 1 3.4023 -3.7406 2.7070 31 1 3.7515 -3.9606 0.9757 32 1 1.2202 -2.6596 3.3090 33 1 1.6275 -1.3378 2.3855 34 1 2.7902 -1.7475 -2.2815 35 1 2.8680 -3.3646 -3.0217 36 1 1.2901 -2.6378 -2.6355 37 1 1.7887 -5.1019 0.0090 38 1 0.8463 -4.7071 -1.4484 39 1 1.1717 -8.3738 -1.5637 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043247591.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:24 Heat of formation + Delta-G solvation = 17.320944 kcal Electronic energy + Delta-G solvation = -19344.081022 eV Core-core repulsion = 16605.455395 eV Total energy + Delta-G solvation = -2738.625627 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.37808 -38.24017 -36.10338 -34.53114 -31.92124 -30.19232 -29.56854 -28.34023 -27.35787 -25.34552 -23.47528 -23.15747 -20.86478 -19.16980 -18.62276 -17.60855 -17.44134 -16.72285 -16.43093 -16.01652 -15.35582 -14.89731 -14.67631 -14.48106 -14.33074 -13.92731 -13.87684 -13.74121 -13.29409 -13.15810 -12.93619 -12.82271 -12.72426 -12.50033 -12.38689 -12.26789 -12.18110 -11.96817 -11.48083 -11.37553 -11.23768 -10.58170 -9.68919 -9.31666 -9.04936 -9.02046 -8.19177 -6.28269 0.20437 0.87152 1.33314 1.40981 1.41782 1.52807 1.89961 2.40409 3.12744 3.16923 3.72848 3.91295 4.09322 4.18551 4.22291 4.48509 4.52290 4.57785 4.64314 4.68598 4.72479 4.83058 4.93778 4.96666 5.05596 5.15259 5.20521 5.24425 5.27572 5.30387 5.40503 5.64659 5.67697 5.73975 6.05737 6.20646 6.32693 6.57751 6.67768 6.87237 7.40771 8.91743 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025742 B = 0.005864 C = 0.005592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.442772 B = 4773.651193 C = 5005.727755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.104 4.104 3 C -0.134 4.134 4 C -0.225 4.225 5 S 0.107 5.893 6 C -0.173 4.173 7 C 0.161 3.839 8 H 0.037 0.963 9 C 0.104 3.896 10 H 0.058 0.942 11 C -0.175 4.175 12 N -0.833 5.833 13 N -0.529 5.529 14 C 0.044 3.956 15 C 0.209 3.791 16 C -0.519 4.519 17 H 0.062 0.938 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.266 1.266 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.042 0.958 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.052 0.948 32 H 0.349 0.651 33 H 0.342 0.658 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.004 0.996 37 H 0.018 0.982 38 H -0.045 1.045 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.555 17.200 5.500 18.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C -0.165 4.165 4 C -0.361 4.361 5 S 0.372 5.628 6 C -0.291 4.291 7 C 0.051 3.949 8 H 0.055 0.945 9 C -0.008 4.008 10 H 0.076 0.924 11 C -0.234 4.234 12 N -0.364 5.364 13 N -0.253 5.253 14 C -0.105 4.105 15 C 0.083 3.917 16 C -0.557 4.557 17 H 0.080 0.920 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.190 1.190 24 H 0.098 0.902 25 H 0.098 0.902 26 H 0.061 0.939 27 H 0.177 0.823 28 H 0.202 0.798 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.162 0.838 33 H 0.156 0.844 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.036 0.964 38 H -0.028 1.028 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.652 16.089 5.239 17.310 hybrid contribution -0.948 -0.315 -0.424 1.086 sum 2.704 15.773 4.815 16.712 Atomic orbital electron populations 1.20482 0.89401 1.01894 1.02796 1.19068 0.97932 0.91548 1.03186 1.20175 0.92816 0.99321 1.04165 1.26069 1.00365 0.99790 1.09840 1.84644 1.05853 0.99802 1.72465 1.24008 0.96308 0.97328 1.11423 1.19959 0.94286 0.87806 0.92868 0.94538 1.21131 0.93590 0.95189 0.90928 0.92360 1.22538 0.97208 1.02605 1.01070 1.58776 1.61898 1.06243 1.09501 1.62132 1.54418 1.02527 1.06255 1.22178 0.98403 0.99142 0.90732 1.19416 0.91707 0.84599 0.95947 1.21426 1.09198 0.94074 1.31022 0.91997 1.25847 0.96826 0.99502 0.97243 1.70084 1.27236 1.14054 1.45993 0.85441 0.78532 0.78140 0.78858 1.19901 1.20920 1.18990 0.90245 0.90221 0.93867 0.82279 0.79788 0.91237 0.92433 0.92921 0.83765 0.84391 0.91149 0.92129 0.97731 0.96396 1.02760 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 9.82 71.24 0.70 -1.35 16 2 C -0.10 -2.69 5.51 -20.92 -0.12 -2.81 16 3 C -0.13 -2.85 9.98 21.22 0.21 -2.64 16 4 C -0.23 -4.74 11.23 66.72 0.75 -3.99 16 5 S 0.11 2.92 19.76 -56.49 -1.12 1.81 16 6 C -0.17 -5.24 2.41 24.59 0.06 -5.18 16 7 C 0.16 5.96 1.80 44.17 0.08 6.04 16 8 H 0.04 1.50 6.28 -2.39 -0.01 1.48 16 9 C 0.10 3.63 2.80 44.91 0.13 3.75 16 10 H 0.06 2.42 6.47 -2.39 -0.02 2.41 16 11 C -0.17 -5.85 8.85 71.98 0.64 -5.21 16 12 N -0.83 -22.91 9.15 -168.68 -1.54 -24.45 16 13 N -0.53 -22.91 3.53 -906.04 -3.19 -26.10 16 14 C 0.04 1.80 9.06 127.69 1.16 2.96 16 15 C 0.21 11.15 4.40 85.56 0.38 11.52 16 16 C -0.52 -29.37 8.46 25.60 0.22 -29.15 16 17 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 18 C 0.00 0.22 5.46 84.66 0.46 0.68 16 19 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 20 Si 0.97 44.56 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 23 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 24 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.08 1.51 8.13 -2.39 -0.02 1.49 16 26 H 0.04 1.21 6.50 -2.38 -0.02 1.20 16 27 H 0.16 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.18 2.77 8.06 -2.91 -0.02 2.74 16 29 H 0.07 2.11 5.18 -4.74 -0.02 2.08 16 30 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.05 2.13 7.35 -2.38 -0.02 2.11 16 32 H 0.35 8.23 9.07 -89.69 -0.81 7.42 16 33 H 0.34 8.73 7.57 -89.70 -0.68 8.05 16 34 H 0.07 2.54 6.37 -2.39 -0.02 2.52 16 35 H 0.06 2.63 6.76 -2.39 -0.02 2.61 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.02 1.02 5.93 -2.39 -0.01 1.01 16 38 H -0.05 -2.68 8.12 -2.38 -0.02 -2.70 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -62.88 316.05 0.67 -62.21 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: -0.44 Total: 21.34 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.66 Total: -25.37 kcal Atomic # 7 Polarization: -102.12 SS G_CDS: -4.45 Total: -106.57 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 2.92 SS G_CDS: -1.12 Total: 1.81 kcal Total: -62.88 0.67 -62.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247591.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.529 kcal (2) G-P(sol) polarization free energy of solvation -62.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds