Wall clock time and date at job start Mon Mar 30 2020 07:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38428 * 122.53969 * 2 1 4 4 C 1.33396 * 114.92186 * 180.02562 * 3 2 1 5 5 S 1.75883 * 109.59184 * 359.75600 * 4 3 2 6 6 C 1.33391 * 122.54096 * 180.02562 * 2 1 3 7 7 C 1.50701 * 125.19974 * 359.94833 * 6 2 1 8 8 H 1.08996 * 109.47105 * 345.00774 * 7 6 2 9 9 C 1.52998 * 109.46682 * 105.00997 * 7 6 2 10 10 H 1.09002 * 109.47281 * 185.70739 * 9 7 6 11 11 C 1.52998 * 109.47687 * 65.70207 * 9 7 6 12 12 N 1.46905 * 109.47252 * 305.69981 * 9 7 6 13 13 N 1.46903 * 109.47041 * 225.00237 * 7 6 2 14 14 C 1.46902 * 110.99778 * 53.24707 * 13 7 6 15 15 C 1.46901 * 110.99683 * 177.19812 * 13 7 6 16 16 C 1.50699 * 109.46735 * 164.52052 * 15 13 7 17 17 H 1.08006 * 120.00587 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99937 * 180.02562 * 16 15 13 19 19 N 1.31510 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47024 * 90.00019 * 20 18 16 22 22 H 1.48502 * 109.46937 * 209.99600 * 20 18 16 23 23 H 1.48499 * 109.47024 * 329.99730 * 20 18 16 24 24 H 1.09000 * 109.47318 * 269.97514 * 1 2 3 25 25 H 1.08999 * 109.47341 * 29.97710 * 1 2 3 26 26 H 1.08995 * 109.47269 * 149.97575 * 1 2 3 27 27 H 1.07997 * 122.54269 * 0.04215 * 3 2 1 28 28 H 1.07997 * 125.20268 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.46907 * 300.00120 * 11 9 7 30 30 H 1.09003 * 109.46666 * 59.99994 * 11 9 7 31 31 H 1.09002 * 109.47178 * 179.97438 * 11 9 7 32 32 H 1.00897 * 111.00284 * 297.25508 * 12 9 7 33 33 H 1.00906 * 110.99640 * 61.19933 * 12 9 7 34 34 H 1.09003 * 109.47055 * 60.00161 * 14 13 7 35 35 H 1.08999 * 109.46822 * 179.97438 * 14 13 7 36 36 H 1.08999 * 109.47394 * 299.99543 * 14 13 7 37 37 H 1.08997 * 109.47323 * 284.52118 * 15 13 7 38 38 H 1.09001 * 109.47162 * 44.52773 * 15 13 7 39 39 H 0.97001 * 120.00169 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9386 -0.7304 0.0060 6 6 2.2244 -1.1245 -0.0005 7 6 1.6536 -2.5192 0.0000 8 1 0.5975 -2.4794 0.2666 9 6 1.8051 -3.1327 -1.3934 10 1 1.3031 -4.0998 -1.4212 11 6 3.2904 -3.3197 -1.7097 12 7 1.2010 -2.2387 -2.3904 13 7 2.3752 -3.3433 0.9789 14 6 2.3875 -2.7014 2.3002 15 6 1.8017 -4.6936 1.0548 16 6 2.7682 -5.6109 1.7586 17 1 3.7138 -5.2290 2.1143 18 6 2.4454 -6.9379 1.9484 19 7 1.2939 -7.4029 1.5158 20 14 3.6432 -8.0749 2.8214 21 1 3.3690 -8.0566 4.2807 22 1 3.4797 -9.4573 2.3044 23 1 5.0331 -7.6146 2.5731 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.7965 2.1464 0.0007 28 1 4.3078 1.7823 -0.0002 29 1 3.7923 -2.3525 -1.6819 30 1 3.7385 -3.9831 -0.9699 31 1 3.3982 -3.7572 -2.7022 32 1 0.2104 -2.1347 -2.2297 33 1 1.6622 -1.3412 -2.3979 34 1 1.3632 -2.5637 2.6467 35 1 2.9275 -3.3328 3.0058 36 1 2.8804 -1.7319 2.2286 37 1 0.8639 -4.6594 1.6093 38 1 1.6150 -5.0662 0.0476 39 1 1.0669 -8.3365 1.6490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043247592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:28 Heat of formation + Delta-G solvation = 34.938907 kcal Electronic energy + Delta-G solvation = -19368.980229 eV Core-core repulsion = 16631.118574 eV Total energy + Delta-G solvation = -2737.861655 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.19169 -36.97534 -34.47815 -32.48540 -30.83850 -28.91263 -28.17066 -26.80773 -25.89619 -23.66509 -22.39512 -21.41225 -19.48936 -18.11245 -16.89510 -16.17427 -15.80663 -15.21885 -14.94222 -14.77753 -14.38955 -13.55168 -13.49133 -13.14063 -12.80671 -12.64533 -12.36423 -12.01038 -11.92118 -11.79918 -11.56499 -11.31841 -11.10813 -11.02064 -10.93314 -10.71336 -10.59244 -10.32069 -10.16876 -9.79373 -9.29394 -8.58340 -8.43977 -8.20939 -7.98625 -7.33004 -6.04116 -4.05129 1.19403 1.90321 2.33731 2.81719 3.31133 3.37747 3.41987 4.40562 4.77871 4.89486 5.02775 5.11632 5.32015 5.40036 5.44388 5.56478 5.61758 5.64109 5.69414 5.93729 6.00953 6.09388 6.14994 6.22959 6.32020 6.48731 6.53974 6.63520 6.68242 6.72580 6.97324 7.16015 7.27548 7.48045 7.72775 7.78250 8.03807 8.13511 8.48956 9.02232 9.59038 11.06557 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.005869 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.251627 B = 4769.989726 C = 4988.936862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.126 4.126 3 C -0.130 4.130 4 C -0.246 4.246 5 S 0.155 5.845 6 C -0.153 4.153 7 C 0.115 3.885 8 H 0.046 0.954 9 C 0.097 3.903 10 H 0.093 0.907 11 C -0.141 4.141 12 N -0.838 5.838 13 N -0.524 5.524 14 C 0.034 3.966 15 C 0.190 3.810 16 C -0.504 4.504 17 H 0.063 0.937 18 C 0.056 3.944 19 N -0.899 5.899 20 Si 0.897 3.103 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.273 1.273 24 H 0.065 0.935 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.156 0.844 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.332 0.668 33 H 0.335 0.665 34 H 0.008 0.992 35 H 0.074 0.926 36 H 0.049 0.951 37 H -0.010 1.010 38 H 0.037 0.963 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 15.497 -4.048 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.139 4.139 3 C -0.161 4.161 4 C -0.382 4.382 5 S 0.422 5.578 6 C -0.271 4.271 7 C 0.003 3.997 8 H 0.064 0.936 9 C -0.015 4.015 10 H 0.111 0.889 11 C -0.199 4.199 12 N -0.366 5.366 13 N -0.249 5.249 14 C -0.115 4.115 15 C 0.066 3.934 16 C -0.542 4.542 17 H 0.081 0.919 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.725 3.275 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.174 0.826 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.070 0.930 32 H 0.144 0.856 33 H 0.148 0.852 34 H 0.027 0.973 35 H 0.093 0.907 36 H 0.067 0.933 37 H 0.008 0.992 38 H 0.054 0.946 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.775 13.883 -4.757 14.936 hybrid contribution -1.873 0.943 1.758 2.736 sum 0.902 14.827 -2.999 15.154 Atomic orbital electron populations 1.20499 0.90403 1.02122 1.02085 1.18781 0.97036 0.91709 1.06366 1.19880 0.92908 0.98663 1.04676 1.25802 0.99742 1.01201 1.11466 1.84607 1.05624 0.96878 1.70670 1.24440 0.96255 0.98377 1.08004 1.21061 0.95088 0.87143 0.96455 0.93604 1.21517 0.97311 0.96213 0.86462 0.88949 1.21847 0.94264 1.02028 1.01718 1.59157 1.07352 1.17836 1.52285 1.62296 1.53052 1.03720 1.05864 1.22299 0.98800 0.98512 0.91872 1.19829 0.93670 0.82437 0.97513 1.21109 1.03320 0.93375 1.36442 0.91853 1.24970 0.95405 0.98161 0.96002 1.69949 1.21842 1.15151 1.46871 0.86517 0.81489 0.79950 0.79584 1.20837 1.21282 1.19750 0.91660 0.91804 0.91898 0.85215 0.82619 0.93108 0.89698 0.93045 0.85587 0.85228 0.97298 0.90691 0.93260 0.99195 0.94553 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.05 9.59 36.00 0.35 -0.71 16 2 C -0.13 -1.68 5.55 -106.25 -0.59 -2.27 16 3 C -0.13 -1.57 9.98 -41.20 -0.41 -1.98 16 4 C -0.25 -2.98 11.23 29.04 0.33 -2.66 16 5 S 0.16 2.23 19.49 -107.50 -2.10 0.13 16 6 C -0.15 -2.30 2.39 -36.00 -0.09 -2.38 16 7 C 0.12 2.00 1.64 -68.86 -0.11 1.89 16 8 H 0.05 0.83 6.65 -51.93 -0.35 0.49 16 9 C 0.10 1.65 2.90 -67.71 -0.20 1.46 16 10 H 0.09 1.80 6.45 -51.93 -0.34 1.47 16 11 C -0.14 -2.43 8.87 37.16 0.33 -2.10 16 12 N -0.84 -12.04 9.14 -4.67 -0.04 -12.08 16 13 N -0.52 -10.77 3.43 -237.73 -0.81 -11.58 16 14 C 0.03 0.67 9.00 60.07 0.54 1.21 16 15 C 0.19 4.75 4.58 -4.98 -0.02 4.72 16 16 C -0.50 -13.76 8.53 -34.44 -0.29 -14.05 16 17 H 0.06 1.73 7.50 -52.48 -0.39 1.33 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.26 13.29 55.43 0.74 -25.52 16 20 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 26 H 0.06 0.73 6.17 -51.93 -0.32 0.41 16 27 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 28 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 29 H 0.05 0.81 5.24 -49.67 -0.26 0.55 16 30 H 0.08 1.68 7.43 -51.93 -0.39 1.30 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.33 4.32 8.29 -39.29 -0.33 4.00 16 33 H 0.33 4.64 7.61 -39.29 -0.30 4.34 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 1.56 7.16 -51.93 -0.37 1.19 16 36 H 0.05 0.87 6.05 -51.93 -0.31 0.56 16 37 H -0.01 -0.27 8.06 -51.93 -0.42 -0.68 16 38 H 0.04 0.96 5.88 -51.93 -0.31 0.65 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 315.40 15.07 4.75 4.75 Total: -1.00 -28.38 315.40 -8.50 -36.88 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -5.75 Total: 6.39 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: -0.27 Total: -15.41 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: -0.12 Total: -49.18 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 2.23 SS G_CDS: -2.10 Total: 0.13 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -28.38 -8.50 -36.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.815 kcal (2) G-P(sol) polarization free energy of solvation -28.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds