Wall clock time and date at job start Mon Mar 30 2020 07:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38428 * 122.53969 * 2 1 4 4 C 1.33396 * 114.92186 * 180.02562 * 3 2 1 5 5 S 1.75883 * 109.59184 * 359.75600 * 4 3 2 6 6 C 1.33391 * 122.54096 * 180.02562 * 2 1 3 7 7 C 1.50701 * 125.19974 * 359.94833 * 6 2 1 8 8 H 1.08996 * 109.47105 * 345.00774 * 7 6 2 9 9 C 1.52998 * 109.46682 * 105.00997 * 7 6 2 10 10 H 1.09002 * 109.47281 * 185.70739 * 9 7 6 11 11 C 1.52998 * 109.47687 * 65.70207 * 9 7 6 12 12 N 1.46905 * 109.47252 * 305.69981 * 9 7 6 13 13 N 1.46903 * 109.47041 * 225.00237 * 7 6 2 14 14 C 1.46902 * 110.99778 * 53.24707 * 13 7 6 15 15 C 1.46901 * 110.99683 * 177.19812 * 13 7 6 16 16 C 1.50699 * 109.46735 * 164.52052 * 15 13 7 17 17 H 1.08006 * 120.00587 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99937 * 180.02562 * 16 15 13 19 19 N 1.31510 * 119.99902 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00067 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47024 * 90.00019 * 20 18 16 22 22 H 1.48502 * 109.46937 * 209.99600 * 20 18 16 23 23 H 1.48499 * 109.47024 * 329.99730 * 20 18 16 24 24 H 1.09000 * 109.47318 * 269.97514 * 1 2 3 25 25 H 1.08999 * 109.47341 * 29.97710 * 1 2 3 26 26 H 1.08995 * 109.47269 * 149.97575 * 1 2 3 27 27 H 1.07997 * 122.54269 * 0.04215 * 3 2 1 28 28 H 1.07997 * 125.20268 * 180.02562 * 4 3 2 29 29 H 1.09002 * 109.46907 * 300.00120 * 11 9 7 30 30 H 1.09003 * 109.46666 * 59.99994 * 11 9 7 31 31 H 1.09002 * 109.47178 * 179.97438 * 11 9 7 32 32 H 1.00897 * 111.00284 * 297.25508 * 12 9 7 33 33 H 1.00906 * 110.99640 * 61.19933 * 12 9 7 34 34 H 1.09003 * 109.47055 * 60.00161 * 14 13 7 35 35 H 1.08999 * 109.46822 * 179.97438 * 14 13 7 36 36 H 1.08999 * 109.47394 * 299.99543 * 14 13 7 37 37 H 1.08997 * 109.47323 * 284.52118 * 15 13 7 38 38 H 1.09001 * 109.47162 * 44.52773 * 15 13 7 39 39 H 0.97001 * 120.00169 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5737 0.9901 -0.0005 5 16 3.9386 -0.7304 0.0060 6 6 2.2244 -1.1245 -0.0005 7 6 1.6536 -2.5192 0.0000 8 1 0.5975 -2.4794 0.2666 9 6 1.8051 -3.1327 -1.3934 10 1 1.3031 -4.0998 -1.4212 11 6 3.2904 -3.3197 -1.7097 12 7 1.2010 -2.2387 -2.3904 13 7 2.3752 -3.3433 0.9789 14 6 2.3875 -2.7014 2.3002 15 6 1.8017 -4.6936 1.0548 16 6 2.7682 -5.6109 1.7586 17 1 3.7138 -5.2290 2.1143 18 6 2.4454 -6.9379 1.9484 19 7 1.2939 -7.4029 1.5158 20 14 3.6432 -8.0749 2.8214 21 1 3.3690 -8.0566 4.2807 22 1 3.4797 -9.4573 2.3044 23 1 5.0331 -7.6146 2.5731 24 1 -0.3634 -0.0004 1.0276 25 1 -0.3634 0.8902 -0.5135 26 1 -0.3633 -0.8897 -0.5142 27 1 1.7965 2.1464 0.0007 28 1 4.3078 1.7823 -0.0002 29 1 3.7923 -2.3525 -1.6819 30 1 3.7385 -3.9831 -0.9699 31 1 3.3982 -3.7572 -2.7022 32 1 0.2104 -2.1347 -2.2297 33 1 1.6622 -1.3412 -2.3979 34 1 1.3632 -2.5637 2.6467 35 1 2.9275 -3.3328 3.0058 36 1 2.8804 -1.7319 2.2286 37 1 0.8639 -4.6594 1.6093 38 1 1.6150 -5.0662 0.0476 39 1 1.0669 -8.3365 1.6490 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043247592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:27 Heat of formation + Delta-G solvation = 16.568580 kcal Electronic energy + Delta-G solvation = -19369.776826 eV Core-core repulsion = 16631.118574 eV Total energy + Delta-G solvation = -2738.658252 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.48301 -38.25400 -36.04841 -34.51379 -31.90182 -30.27405 -29.69114 -28.42434 -27.37855 -25.29200 -23.51782 -23.09014 -20.92178 -19.24795 -18.60942 -17.72756 -17.12100 -16.81743 -16.40501 -16.11865 -15.94587 -14.97626 -14.71611 -14.50537 -14.26196 -13.95182 -13.85964 -13.61206 -13.20197 -13.05672 -12.92208 -12.77367 -12.72670 -12.47549 -12.43657 -12.41922 -12.28137 -11.90400 -11.51600 -11.39807 -11.31083 -10.58093 -9.77570 -9.36909 -9.08953 -9.04248 -8.19014 -6.27979 0.14157 0.83056 1.30026 1.40811 1.41874 1.53423 1.82715 2.40625 3.13477 3.22456 3.66602 3.79143 4.08976 4.12321 4.15856 4.44671 4.48010 4.53079 4.62626 4.64239 4.70828 4.77769 4.80343 5.01951 5.06461 5.09505 5.16773 5.20895 5.24388 5.28889 5.49483 5.57762 5.64350 5.69104 6.05693 6.17936 6.29837 6.57269 6.60755 6.87009 7.41080 8.91586 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.005869 C = 0.005611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.251627 B = 4769.989726 C = 4988.936862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.110 4.110 3 C -0.135 4.135 4 C -0.225 4.225 5 S 0.117 5.883 6 C -0.181 4.181 7 C 0.123 3.877 8 H 0.036 0.964 9 C 0.104 3.896 10 H 0.059 0.941 11 C -0.132 4.132 12 N -0.828 5.828 13 N -0.525 5.525 14 C 0.042 3.958 15 C 0.209 3.791 16 C -0.517 4.517 17 H 0.061 0.939 18 C 0.004 3.996 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.275 1.275 22 H -0.283 1.283 23 H -0.266 1.266 24 H 0.064 0.936 25 H 0.090 0.910 26 H 0.056 0.944 27 H 0.160 0.840 28 H 0.185 0.815 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.342 0.658 33 H 0.343 0.657 34 H 0.004 0.996 35 H 0.057 0.943 36 H 0.071 0.929 37 H -0.043 1.043 38 H 0.018 0.982 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.466 17.859 -4.141 18.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.166 4.166 4 C -0.360 4.360 5 S 0.384 5.616 6 C -0.299 4.299 7 C 0.011 3.989 8 H 0.054 0.946 9 C -0.009 4.009 10 H 0.077 0.923 11 C -0.190 4.190 12 N -0.357 5.357 13 N -0.249 5.249 14 C -0.107 4.107 15 C 0.083 3.917 16 C -0.555 4.555 17 H 0.079 0.921 18 C -0.194 4.194 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.200 1.200 22 H -0.208 1.208 23 H -0.190 1.190 24 H 0.083 0.917 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.178 0.822 28 H 0.202 0.798 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.155 0.845 33 H 0.157 0.843 34 H 0.023 0.977 35 H 0.076 0.924 36 H 0.090 0.910 37 H -0.026 1.026 38 H 0.035 0.965 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.473 16.272 -4.856 17.333 hybrid contribution -2.132 0.351 1.754 2.783 sum 1.341 16.624 -3.102 16.964 Atomic orbital electron populations 1.20580 0.89243 1.03176 1.02381 1.19109 0.97978 0.91568 1.03734 1.20167 0.92805 0.99343 1.04238 1.26114 1.00466 0.99909 1.09518 1.84719 1.05552 0.99633 1.71740 1.24070 0.96800 0.97254 1.11728 1.20929 0.94323 0.88347 0.95303 0.94649 1.21270 0.96976 0.95388 0.87253 0.92268 1.21729 0.94315 1.02196 1.00796 1.59064 1.07946 1.17863 1.50846 1.62174 1.53203 1.02536 1.07018 1.22226 0.98483 0.99000 0.90984 1.19432 0.91923 0.84896 0.95459 1.21404 1.03471 0.94149 1.36478 0.92126 1.25835 0.97086 0.99801 0.96687 1.70074 1.23645 1.15602 1.48090 0.85451 0.79353 0.77721 0.78513 1.20043 1.20838 1.18987 0.91679 0.89106 0.92536 0.82217 0.79754 0.91499 0.92770 0.92687 0.84547 0.84333 0.97730 0.92388 0.90999 1.02550 0.96450 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.93 9.59 71.23 0.68 -1.24 16 2 C -0.11 -2.64 5.55 -20.92 -0.12 -2.76 16 3 C -0.14 -2.71 9.98 21.22 0.21 -2.50 16 4 C -0.22 -4.58 11.23 66.72 0.75 -3.83 16 5 S 0.12 3.16 19.49 -56.49 -1.10 2.06 16 6 C -0.18 -5.23 2.39 24.59 0.06 -5.17 16 7 C 0.12 4.36 1.64 44.17 0.07 4.43 16 8 H 0.04 1.33 6.65 -2.39 -0.02 1.31 16 9 C 0.10 3.63 2.90 44.91 0.13 3.76 16 10 H 0.06 2.46 6.45 -2.39 -0.02 2.44 16 11 C -0.13 -4.66 8.87 71.98 0.64 -4.02 16 12 N -0.83 -23.25 9.14 -168.67 -1.54 -24.80 16 13 N -0.52 -22.30 3.43 -906.04 -3.10 -25.40 16 14 C 0.04 1.67 9.00 127.69 1.15 2.82 16 15 C 0.21 10.98 4.58 85.56 0.39 11.37 16 16 C -0.52 -29.14 8.53 25.60 0.22 -28.92 16 17 H 0.06 3.38 7.50 -2.91 -0.02 3.36 16 18 C 0.00 0.22 5.46 84.66 0.46 0.68 16 19 N -0.93 -56.12 13.29 21.45 0.28 -55.84 16 20 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 22 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.09 1.36 8.13 -2.39 -0.02 1.34 16 26 H 0.06 1.22 6.17 -2.39 -0.01 1.21 16 27 H 0.16 2.31 8.06 -2.91 -0.02 2.28 16 28 H 0.19 2.69 8.06 -2.91 -0.02 2.66 16 29 H 0.07 2.12 5.24 -3.82 -0.02 2.10 16 30 H 0.05 2.23 7.43 -2.39 -0.02 2.21 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.34 8.64 8.29 -89.70 -0.74 7.90 16 33 H 0.34 8.92 7.61 -89.69 -0.68 8.24 16 34 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.06 2.47 7.16 -2.39 -0.02 2.45 16 36 H 0.07 2.52 6.05 -2.39 -0.01 2.51 16 37 H -0.04 -2.51 8.06 -2.39 -0.02 -2.53 16 38 H 0.02 0.98 5.88 -2.39 -0.01 0.97 16 39 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 Total: -1.00 -62.50 315.40 0.84 -61.66 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -0.37 Total: 21.10 kcal Atomic # 6 Polarization: -30.02 SS G_CDS: 4.65 Total: -25.38 kcal Atomic # 7 Polarization: -101.67 SS G_CDS: -4.36 Total: -106.03 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -1.10 Total: 2.06 kcal Total: -62.50 0.84 -61.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.225 kcal (2) G-P(sol) polarization free energy of solvation -62.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds