Wall clock time and date at job start Mon Mar 30 2020 07:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38424 * 122.54277 * 2 1 4 4 C 1.33381 * 114.92550 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.59170 * 0.02562 * 4 3 2 6 6 C 1.33390 * 122.53657 * 179.71160 * 2 1 3 7 7 C 1.50694 * 125.20670 * 0.02562 * 6 2 1 8 8 H 1.09005 * 109.46766 * 355.63207 * 7 6 2 9 9 C 1.52996 * 109.47397 * 235.63489 * 7 6 2 10 10 H 1.09007 * 109.47018 * 305.16702 * 9 7 6 11 11 C 1.53000 * 109.47471 * 185.16640 * 9 7 6 12 12 N 1.46903 * 109.47304 * 65.16623 * 9 7 6 13 13 N 1.46901 * 109.47260 * 115.62864 * 7 6 2 14 14 C 1.46896 * 111.00297 * 297.85824 * 13 7 6 15 15 C 1.46902 * 110.99619 * 61.81231 * 13 7 6 16 16 C 1.50700 * 109.47421 * 164.20889 * 15 13 7 17 17 H 1.08001 * 119.99632 * 359.97438 * 16 15 13 18 18 C 1.37872 * 120.00125 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47577 * 89.99718 * 20 18 16 22 22 H 1.48500 * 109.47035 * 209.99897 * 20 18 16 23 23 H 1.48506 * 109.46964 * 329.99798 * 20 18 16 24 24 H 1.09000 * 109.47568 * 90.01865 * 1 2 3 25 25 H 1.09006 * 109.46984 * 330.02414 * 1 2 3 26 26 H 1.09004 * 109.47315 * 210.02656 * 1 2 3 27 27 H 1.08006 * 122.53383 * 0.02562 * 3 2 1 28 28 H 1.07999 * 125.20957 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.46778 * 55.67930 * 11 9 7 30 30 H 1.08995 * 109.47431 * 175.68063 * 11 9 7 31 31 H 1.09004 * 109.46949 * 295.68573 * 11 9 7 32 32 H 1.00898 * 110.99813 * 60.00053 * 12 9 7 33 33 H 1.00892 * 111.00326 * 183.95935 * 12 9 7 34 34 H 1.08994 * 109.47694 * 65.81611 * 14 13 7 35 35 H 1.09007 * 109.46853 * 185.82142 * 14 13 7 36 36 H 1.09001 * 109.46928 * 305.81887 * 14 13 7 37 37 H 1.09007 * 109.47002 * 284.20673 * 15 13 7 38 38 H 1.08998 * 109.47360 * 44.20429 * 15 13 7 39 39 H 0.96996 * 119.99987 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9386 -0.7305 0.0004 6 6 2.2244 -1.1245 0.0057 7 6 1.6536 -2.5192 0.0121 8 1 0.5676 -2.4669 0.0897 9 6 2.2135 -3.2939 1.2067 10 1 3.3029 -3.2678 1.1784 11 6 1.7364 -4.7462 1.1418 12 7 1.7412 -2.6787 2.4543 13 7 2.0231 -3.2053 -1.2332 14 6 1.4584 -2.5164 -2.4013 15 6 3.4818 -3.3325 -1.3513 16 6 3.8131 -4.3547 -2.4079 17 1 3.0193 -4.8597 -2.9382 18 6 5.1294 -4.6452 -2.6974 19 7 6.0959 -4.0298 -2.0519 20 14 5.5399 -5.9118 -4.0076 21 1 5.6574 -5.2397 -5.3264 22 1 6.8272 -6.5717 -3.6719 23 1 4.4615 -6.9311 -4.0658 24 1 -0.3634 -0.0003 -1.0276 25 1 -0.3633 0.8903 0.5135 26 1 -0.3634 -0.8898 0.5143 27 1 1.7965 2.1464 0.0004 28 1 4.3078 1.7822 0.0002 29 1 2.0209 -5.1795 0.1829 30 1 2.1965 -5.3162 1.9489 31 1 0.6519 -4.7773 1.2472 32 1 0.7336 -2.6907 2.5045 33 1 2.1487 -3.1323 3.2581 34 1 1.9152 -1.5316 -2.4984 35 1 1.6592 -3.1004 -3.2996 36 1 0.3816 -2.4063 -2.2727 37 1 3.9090 -2.3694 -1.6310 38 1 3.8974 -3.6504 -0.3951 39 1 7.0219 -4.2340 -2.2559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043247593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:31 Heat of formation + Delta-G solvation = 37.009477 kcal Electronic energy + Delta-G solvation = -19515.133004 eV Core-core repulsion = 16777.361136 eV Total energy + Delta-G solvation = -2737.771868 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.90457 -36.80892 -34.51858 -32.47950 -30.56497 -28.63868 -27.99529 -27.19923 -25.27349 -23.69931 -22.11693 -21.57207 -19.33583 -17.96789 -16.66207 -16.40634 -15.65694 -14.91989 -14.74696 -14.28421 -13.99252 -13.58051 -13.14819 -12.97203 -12.87242 -12.68556 -12.19238 -12.00648 -11.94804 -11.56768 -11.53163 -11.29264 -11.06195 -10.99269 -10.77847 -10.60988 -10.57711 -10.30845 -9.89940 -9.62403 -9.19870 -8.44644 -8.34789 -7.98139 -7.71863 -7.17650 -6.01030 -4.01925 1.63756 2.35093 2.73534 3.22523 3.31685 3.38272 3.41937 4.41978 4.67834 5.12773 5.28209 5.35324 5.37605 5.49400 5.66851 5.70434 5.80394 5.86936 5.92345 5.97330 6.06671 6.14341 6.23371 6.30889 6.40582 6.55020 6.63249 6.72542 6.83030 6.94938 7.06561 7.20640 7.36572 7.49988 7.72517 7.80243 8.06204 8.16389 8.52467 9.04219 9.61055 11.08799 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.007250 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.647382 B = 3861.241706 C = 4289.522330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.125 4.125 3 C -0.134 4.134 4 C -0.256 4.256 5 S 0.163 5.837 6 C -0.170 4.170 7 C 0.156 3.844 8 H 0.084 0.916 9 C 0.093 3.907 10 H 0.088 0.912 11 C -0.176 4.176 12 N -0.840 5.840 13 N -0.523 5.523 14 C 0.039 3.961 15 C 0.176 3.824 16 C -0.505 4.505 17 H 0.062 0.938 18 C 0.057 3.943 19 N -0.893 5.893 20 Si 0.894 3.106 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.124 0.876 28 H 0.150 0.850 29 H 0.090 0.910 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.332 0.668 33 H 0.338 0.662 34 H 0.018 0.982 35 H 0.072 0.928 36 H 0.044 0.956 37 H 0.013 0.987 38 H 0.034 0.966 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.039 6.110 6.428 12.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C -0.166 4.166 4 C -0.392 4.392 5 S 0.430 5.570 6 C -0.290 4.290 7 C 0.045 3.955 8 H 0.101 0.899 9 C -0.019 4.019 10 H 0.106 0.894 11 C -0.235 4.235 12 N -0.368 5.368 13 N -0.245 5.245 14 C -0.110 4.110 15 C 0.050 3.950 16 C -0.544 4.544 17 H 0.080 0.920 18 C -0.145 4.145 19 N -0.533 5.533 20 Si 0.722 3.278 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.080 0.920 27 H 0.141 0.859 28 H 0.168 0.832 29 H 0.109 0.891 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.144 0.856 33 H 0.150 0.850 34 H 0.036 0.964 35 H 0.090 0.910 36 H 0.063 0.937 37 H 0.030 0.970 38 H 0.052 0.948 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.288 5.451 6.175 10.998 hybrid contribution -0.854 0.220 -0.570 1.050 sum -8.142 5.671 5.605 11.396 Atomic orbital electron populations 1.20397 0.90886 1.01753 1.01270 1.18584 0.96605 0.91684 1.06889 1.19803 0.92894 0.98451 1.05410 1.25796 0.99645 1.01702 1.12041 1.85193 1.05113 0.97008 1.69652 1.25178 0.96280 1.00002 1.07566 1.20375 0.98434 0.84978 0.91707 0.89864 1.21514 1.00438 0.91487 0.88441 0.89436 1.22461 0.99823 0.97305 1.03902 1.58832 1.12305 1.61808 1.03863 1.62564 1.16165 1.46295 0.99510 1.22170 0.97307 0.96764 0.94748 1.20104 0.80252 0.96678 0.97962 1.21093 0.91662 1.21781 1.19836 0.91973 1.24952 0.96383 0.96542 0.96580 1.69953 0.99483 1.42323 1.41519 0.86560 0.77723 0.81638 0.81867 1.20820 1.21318 1.19872 0.92247 0.92398 0.91973 0.85863 0.83181 0.89144 0.93900 0.93733 0.85620 0.85003 0.96358 0.90957 0.93733 0.96959 0.94783 0.92974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.10 9.74 36.00 0.35 -0.75 16 2 C -0.12 -2.04 5.80 -106.25 -0.62 -2.66 16 3 C -0.13 -2.13 9.98 -41.21 -0.41 -2.54 16 4 C -0.26 -4.27 11.23 29.03 0.33 -3.94 16 5 S 0.16 3.17 19.48 -107.50 -2.09 1.07 16 6 C -0.17 -3.07 3.58 -36.01 -0.13 -3.20 16 7 C 0.16 2.78 1.88 -68.87 -0.13 2.65 16 8 H 0.08 1.37 6.20 -51.93 -0.32 1.05 16 9 C 0.09 1.57 2.34 -67.71 -0.16 1.41 16 10 H 0.09 1.76 5.89 -51.93 -0.31 1.45 16 11 C -0.18 -2.84 9.33 37.16 0.35 -2.49 16 12 N -0.84 -11.61 8.95 -4.67 -0.04 -11.65 16 13 N -0.52 -10.81 3.71 -237.73 -0.88 -11.69 16 14 C 0.04 0.76 9.01 60.06 0.54 1.30 16 15 C 0.18 4.33 2.96 -4.98 -0.01 4.31 16 16 C -0.50 -13.77 8.62 -34.44 -0.30 -14.06 16 17 H 0.06 1.69 7.49 -52.49 -0.39 1.30 16 18 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 19 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 26 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 27 H 0.12 1.65 8.06 -52.48 -0.42 1.22 16 28 H 0.15 2.14 8.06 -52.49 -0.42 1.72 16 29 H 0.09 1.75 7.11 -51.93 -0.37 1.38 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.33 4.00 9.00 -39.29 -0.35 3.65 16 33 H 0.34 4.12 9.07 -39.30 -0.36 3.76 16 34 H 0.02 0.37 7.30 -51.93 -0.38 -0.01 16 35 H 0.07 1.48 7.32 -51.93 -0.38 1.10 16 36 H 0.04 0.74 8.11 -51.93 -0.42 0.32 16 37 H 0.01 0.34 5.57 -46.79 -0.26 0.08 16 38 H 0.03 0.90 5.65 -51.93 -0.29 0.60 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 318.47 15.07 4.80 4.80 Total: -1.00 -28.95 318.47 -8.64 -37.58 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.85 Total: 7.09 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: -0.29 Total: -18.49 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.19 Total: -48.43 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: 3.17 SS G_CDS: -2.09 Total: 1.07 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.95 -8.64 -37.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.592 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds