Wall clock time and date at job start Mon Mar 30 2020 07:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38424 * 122.54277 * 2 1 4 4 C 1.33381 * 114.92550 * 179.97438 * 3 2 1 5 5 S 1.75889 * 109.59170 * 0.02562 * 4 3 2 6 6 C 1.33390 * 122.53657 * 179.71160 * 2 1 3 7 7 C 1.50694 * 125.20670 * 0.02562 * 6 2 1 8 8 H 1.09005 * 109.46766 * 355.63207 * 7 6 2 9 9 C 1.52996 * 109.47397 * 235.63489 * 7 6 2 10 10 H 1.09007 * 109.47018 * 305.16702 * 9 7 6 11 11 C 1.53000 * 109.47471 * 185.16640 * 9 7 6 12 12 N 1.46903 * 109.47304 * 65.16623 * 9 7 6 13 13 N 1.46901 * 109.47260 * 115.62864 * 7 6 2 14 14 C 1.46896 * 111.00297 * 297.85824 * 13 7 6 15 15 C 1.46902 * 110.99619 * 61.81231 * 13 7 6 16 16 C 1.50700 * 109.47421 * 164.20889 * 15 13 7 17 17 H 1.08001 * 119.99632 * 359.97438 * 16 15 13 18 18 C 1.37872 * 120.00125 * 179.97438 * 16 15 13 19 19 N 1.31509 * 120.00215 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99863 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47577 * 89.99718 * 20 18 16 22 22 H 1.48500 * 109.47035 * 209.99897 * 20 18 16 23 23 H 1.48506 * 109.46964 * 329.99798 * 20 18 16 24 24 H 1.09000 * 109.47568 * 90.01865 * 1 2 3 25 25 H 1.09006 * 109.46984 * 330.02414 * 1 2 3 26 26 H 1.09004 * 109.47315 * 210.02656 * 1 2 3 27 27 H 1.08006 * 122.53383 * 0.02562 * 3 2 1 28 28 H 1.07999 * 125.20957 * 179.97438 * 4 3 2 29 29 H 1.09002 * 109.46778 * 55.67930 * 11 9 7 30 30 H 1.08995 * 109.47431 * 175.68063 * 11 9 7 31 31 H 1.09004 * 109.46949 * 295.68573 * 11 9 7 32 32 H 1.00898 * 110.99813 * 60.00053 * 12 9 7 33 33 H 1.00892 * 111.00326 * 183.95935 * 12 9 7 34 34 H 1.08994 * 109.47694 * 65.81611 * 14 13 7 35 35 H 1.09007 * 109.46853 * 185.82142 * 14 13 7 36 36 H 1.09001 * 109.46928 * 305.81887 * 14 13 7 37 37 H 1.09007 * 109.47002 * 284.20673 * 15 13 7 38 38 H 1.08998 * 109.47360 * 44.20429 * 15 13 7 39 39 H 0.96996 * 119.99987 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2516 1.1669 0.0000 4 6 3.5736 0.9901 0.0005 5 16 3.9386 -0.7305 0.0004 6 6 2.2244 -1.1245 0.0057 7 6 1.6536 -2.5192 0.0121 8 1 0.5676 -2.4669 0.0897 9 6 2.2135 -3.2939 1.2067 10 1 3.3029 -3.2678 1.1784 11 6 1.7364 -4.7462 1.1418 12 7 1.7412 -2.6787 2.4543 13 7 2.0231 -3.2053 -1.2332 14 6 1.4584 -2.5164 -2.4013 15 6 3.4818 -3.3325 -1.3513 16 6 3.8131 -4.3547 -2.4079 17 1 3.0193 -4.8597 -2.9382 18 6 5.1294 -4.6452 -2.6974 19 7 6.0959 -4.0298 -2.0519 20 14 5.5399 -5.9118 -4.0076 21 1 5.6574 -5.2397 -5.3264 22 1 6.8272 -6.5717 -3.6719 23 1 4.4615 -6.9311 -4.0658 24 1 -0.3634 -0.0003 -1.0276 25 1 -0.3633 0.8903 0.5135 26 1 -0.3634 -0.8898 0.5143 27 1 1.7965 2.1464 0.0004 28 1 4.3078 1.7822 0.0002 29 1 2.0209 -5.1795 0.1829 30 1 2.1965 -5.3162 1.9489 31 1 0.6519 -4.7773 1.2472 32 1 0.7336 -2.6907 2.5045 33 1 2.1487 -3.1323 3.2581 34 1 1.9152 -1.5316 -2.4984 35 1 1.6592 -3.1004 -3.2996 36 1 0.3816 -2.4063 -2.2727 37 1 3.9090 -2.3694 -1.6310 38 1 3.8974 -3.6504 -0.3951 39 1 7.0219 -4.2340 -2.2559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043247593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:31 Heat of formation + Delta-G solvation = 17.516024 kcal Electronic energy + Delta-G solvation = -19515.978304 eV Core-core repulsion = 16777.361136 eV Total energy + Delta-G solvation = -2738.617168 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.32286 -38.17987 -36.01146 -34.49090 -31.85340 -29.95580 -29.49415 -28.86419 -26.70810 -25.45388 -23.47176 -23.13425 -20.81565 -19.38898 -18.31780 -18.01906 -17.15030 -16.65539 -16.13282 -15.90264 -15.43287 -15.06329 -14.47994 -14.31815 -14.26108 -14.08730 -13.84685 -13.51766 -13.25350 -13.08363 -12.83874 -12.79540 -12.67762 -12.52082 -12.35309 -12.30052 -12.09130 -12.03375 -11.48272 -11.23227 -11.06745 -10.53043 -9.54942 -9.34562 -9.21887 -8.78735 -8.12525 -6.21148 0.30685 0.97770 1.39976 1.40974 1.41793 1.52445 1.96179 2.42633 3.18648 3.25986 3.77963 3.96897 4.09309 4.19806 4.32149 4.52078 4.56062 4.64714 4.66797 4.69822 4.77586 4.85238 4.93722 5.00405 5.10547 5.17443 5.25920 5.30130 5.34933 5.43785 5.46781 5.67825 5.71141 5.85265 6.13568 6.27761 6.40229 6.64199 6.75338 6.93804 7.46112 8.96173 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.020058 B = 0.007250 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.647382 B = 3861.241706 C = 4289.522330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.119 4.119 3 C -0.132 4.132 4 C -0.248 4.248 5 S 0.064 5.936 6 C -0.177 4.177 7 C 0.159 3.841 8 H 0.107 0.893 9 C 0.101 3.899 10 H 0.048 0.952 11 C -0.167 4.167 12 N -0.835 5.835 13 N -0.528 5.528 14 C 0.045 3.955 15 C 0.198 3.802 16 C -0.520 4.520 17 H 0.058 0.942 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.266 1.266 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.158 0.842 28 H 0.171 0.829 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.347 0.653 33 H 0.348 0.652 34 H 0.004 0.996 35 H 0.055 0.945 36 H 0.079 0.921 37 H -0.008 1.008 38 H 0.011 0.989 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.568 6.930 6.656 15.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.132 4.132 3 C -0.163 4.163 4 C -0.383 4.383 5 S 0.331 5.669 6 C -0.296 4.296 7 C 0.048 3.952 8 H 0.124 0.876 9 C -0.011 4.011 10 H 0.066 0.934 11 C -0.227 4.227 12 N -0.365 5.365 13 N -0.250 5.250 14 C -0.104 4.104 15 C 0.071 3.929 16 C -0.559 4.559 17 H 0.076 0.924 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.203 1.203 22 H -0.210 1.210 23 H -0.191 1.191 24 H 0.087 0.913 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.189 0.811 29 H 0.073 0.927 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.161 0.839 33 H 0.161 0.839 34 H 0.023 0.977 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.010 0.990 38 H 0.029 0.971 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.848 6.272 6.414 13.322 hybrid contribution -0.145 0.070 -0.573 0.596 sum -9.994 6.342 5.840 13.199 Atomic orbital electron populations 1.20500 0.88034 1.03363 1.02335 1.19102 0.98570 0.91089 1.04437 1.20233 0.92462 0.99842 1.03794 1.25978 1.00756 0.99686 1.11904 1.85563 1.08561 1.00821 1.71978 1.25081 0.94473 1.00576 1.09482 1.20424 0.99431 0.84891 0.90417 0.87557 1.21239 0.98158 0.92040 0.89643 0.93412 1.22365 1.01394 0.96702 1.02200 1.58712 1.13438 1.61473 1.02919 1.62451 1.13564 1.47703 1.01265 1.22133 0.99103 0.95426 0.93731 1.19654 0.82638 0.94803 0.95757 1.21462 0.91779 1.22294 1.20345 0.92396 1.25767 0.96347 0.98481 0.98674 1.70090 0.99707 1.43799 1.43036 0.85547 0.77538 0.79290 0.79216 1.20256 1.20998 1.19088 0.91289 0.90035 0.91216 0.82442 0.81127 0.92747 0.92962 0.91252 0.83939 0.83861 0.97697 0.92610 0.90236 0.99044 0.97144 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.74 71.24 0.69 -1.13 16 2 C -0.12 -3.58 5.80 -20.92 -0.12 -3.70 16 3 C -0.13 -3.83 9.98 21.21 0.21 -3.62 16 4 C -0.25 -8.03 11.23 66.72 0.75 -7.28 16 5 S 0.06 2.60 19.48 -56.49 -1.10 1.50 16 6 C -0.18 -6.26 3.58 24.59 0.09 -6.17 16 7 C 0.16 5.52 1.88 44.17 0.08 5.60 16 8 H 0.11 3.18 6.20 -2.38 -0.01 3.17 16 9 C 0.10 3.42 2.34 44.91 0.10 3.52 16 10 H 0.05 2.02 5.89 -2.38 -0.01 2.01 16 11 C -0.17 -5.32 9.33 71.98 0.67 -4.65 16 12 N -0.83 -21.83 8.95 -168.67 -1.51 -23.34 16 13 N -0.53 -21.98 3.71 -906.05 -3.36 -25.34 16 14 C 0.04 1.71 9.01 127.69 1.15 2.86 16 15 C 0.20 10.19 2.96 85.56 0.25 10.44 16 16 C -0.52 -29.26 8.62 25.60 0.22 -29.04 16 17 H 0.06 3.22 7.49 -2.91 -0.02 3.20 16 18 C 0.01 0.32 5.46 84.65 0.46 0.78 16 19 N -0.93 -55.54 13.29 21.44 0.28 -55.25 16 20 Si 0.96 44.69 29.54 68.60 2.03 46.72 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 23 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 24 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.08 1.44 8.13 -2.38 -0.02 1.42 16 26 H 0.07 1.44 6.58 -2.39 -0.02 1.42 16 27 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 28 H 0.17 4.65 8.06 -2.91 -0.02 4.63 16 29 H 0.05 2.14 7.11 -2.39 -0.02 2.12 16 30 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 32 H 0.35 7.35 9.00 -89.70 -0.81 6.54 16 33 H 0.35 8.04 9.07 -89.70 -0.81 7.23 16 34 H 0.00 0.18 7.30 -2.39 -0.02 0.17 16 35 H 0.06 2.29 7.32 -2.38 -0.02 2.27 16 36 H 0.08 2.45 8.11 -2.39 -0.02 2.43 16 37 H -0.01 -0.43 5.57 -5.65 -0.03 -0.47 16 38 H 0.01 0.59 5.65 -2.39 -0.01 0.58 16 39 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -64.91 318.47 0.33 -64.58 By element: Atomic # 1 Polarization: 24.10 SS G_CDS: -0.58 Total: 23.52 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: 4.57 Total: -32.39 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.58 Total: -103.93 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -1.10 Total: 1.50 kcal Total: -64.91 0.33 -64.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043247593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.094 kcal (2) G-P(sol) polarization free energy of solvation -64.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds