Wall clock time and date at job start Mon Mar 30 2020 07:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 H 1.09000 * 109.46857 * 304.99521 * 3 2 1 5 5 C 1.50699 * 109.46828 * 185.00170 * 3 2 1 6 6 H 1.08007 * 119.99614 * 239.99461 * 5 3 2 7 7 C 1.37871 * 120.00408 * 59.99879 * 5 3 2 8 8 N 1.31518 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47345 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47004 * 119.99792 * 9 7 5 12 12 H 1.48500 * 109.47399 * 239.99582 * 9 7 5 13 13 C 1.50693 * 109.47248 * 64.99843 * 3 2 1 14 14 O 1.21326 * 120.00024 * 95.27705 * 13 3 2 15 15 C 1.46656 * 119.99985 * 274.99807 * 13 3 2 16 16 C 1.39244 * 120.72193 * 354.01175 * 15 13 3 17 17 C 1.38699 * 120.54093 * 179.97438 * 16 15 13 18 18 C 1.36199 * 121.86321 * 0.02562 * 17 16 15 19 19 C 1.40507 * 120.72405 * 359.97438 * 18 17 16 20 20 C 1.40562 * 121.32288 * 180.02562 * 19 18 17 21 21 C 1.36173 * 119.62182 * 179.14294 * 20 19 18 22 22 C 1.39265 * 120.99538 * 0.86069 * 21 20 19 23 23 C 1.36365 * 120.90158 * 359.41785 * 22 21 20 24 24 C 1.39911 * 119.62356 * 359.97438 * 23 22 21 25 25 H 1.08993 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47154 * 300.00619 * 1 2 3 27 27 H 1.08999 * 109.47023 * 60.00445 * 1 2 3 28 28 H 1.08997 * 109.47364 * 239.99892 * 2 1 3 29 29 H 1.08999 * 109.47023 * 119.99555 * 2 1 3 30 30 H 0.96999 * 119.99977 * 180.02562 * 8 7 5 31 31 H 1.08003 * 119.73222 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.06659 * 180.02562 * 17 16 15 33 33 H 1.08005 * 119.63633 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.18577 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.50007 * 180.25374 * 21 20 19 36 36 H 1.08001 * 119.55153 * 179.44093 * 22 21 20 37 37 H 1.08002 * 120.18719 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5987 1.5463 -0.1942 11 1 6.4970 -0.5175 -1.4629 12 1 6.3990 1.6167 -2.6102 13 6 1.6413 2.1163 1.2876 14 8 2.4180 2.1529 2.2190 15 6 0.3167 2.7332 1.4128 16 6 -0.5366 2.8150 0.3155 17 6 -1.7887 3.3987 0.4383 18 6 -2.2308 3.9102 1.6207 19 6 -1.4237 3.8626 2.7699 20 6 -1.8674 4.3861 3.9966 21 6 -1.0635 4.3059 5.0928 22 6 0.2012 3.7282 5.0140 23 6 0.6651 3.2159 3.8384 24 6 -0.1395 3.2701 2.6951 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0619 -2.9494 31 1 -0.2212 2.4199 -0.6389 32 1 -2.4314 3.4491 -0.4282 33 1 -3.2124 4.3572 1.6756 34 1 -2.8457 4.8372 4.0725 35 1 -1.4081 4.7050 6.0353 36 1 0.8230 3.6849 5.8960 37 1 1.6479 2.7708 3.7903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:49 Heat of formation + Delta-G solvation = 1.539662 kcal Electronic energy + Delta-G solvation = -19974.800054 eV Core-core repulsion = 17067.753397 eV Total energy + Delta-G solvation = -2907.046657 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.21981 -38.25513 -36.20568 -34.40522 -32.36666 -31.56768 -30.04391 -29.13245 -27.74997 -24.53833 -23.20114 -22.69645 -22.34683 -20.75974 -18.80887 -17.15575 -16.54308 -16.27497 -16.05394 -15.18926 -14.82289 -14.30743 -14.13225 -13.78858 -13.30304 -13.10980 -13.02218 -12.64430 -12.56955 -12.21675 -11.93042 -11.64535 -11.31675 -11.11674 -11.04479 -10.91369 -10.76089 -10.64144 -10.13872 -10.00571 -9.78973 -9.50532 -8.97257 -8.49039 -8.43541 -8.21058 -7.64711 -6.06571 -4.11451 0.47207 1.23108 1.97609 2.96834 3.29445 3.37513 3.44558 3.56531 4.38169 4.40596 4.71885 4.83552 5.00603 5.13291 5.20967 5.23224 5.26705 5.53276 5.55329 5.62675 5.86491 6.09137 6.12824 6.17351 6.26913 6.31398 6.36516 6.44551 6.57137 6.59661 6.72812 6.79650 6.83569 6.90334 7.09657 7.12801 7.19616 7.52168 7.76048 7.97648 8.22345 8.62959 8.94163 9.53438 10.99758 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.005653 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.377154 B = 4952.067022 C = 5602.482427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C 0.013 3.987 4 H 0.053 0.947 5 C -0.506 4.506 6 H 0.068 0.932 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.896 3.104 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.284 1.284 13 C 0.402 3.598 14 O -0.459 6.459 15 C -0.143 4.143 16 C -0.060 4.060 17 C -0.128 4.128 18 C -0.092 4.092 19 C -0.065 4.065 20 C -0.114 4.114 21 C -0.121 4.121 22 C -0.126 4.126 23 C -0.106 4.106 24 C -0.023 4.023 25 H 0.038 0.962 26 H 0.041 0.959 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.037 0.963 30 H 0.261 0.739 31 H 0.144 0.856 32 H 0.125 0.875 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.987 5.625 7.236 15.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.006 4.006 4 H 0.071 0.929 5 C -0.544 4.544 6 H 0.087 0.913 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.724 3.276 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.281 3.719 14 O -0.336 6.336 15 C -0.144 4.144 16 C -0.078 4.078 17 C -0.146 4.146 18 C -0.110 4.110 19 C -0.065 4.065 20 C -0.132 4.132 21 C -0.139 4.139 22 C -0.144 4.144 23 C -0.123 4.123 24 C -0.023 4.023 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.162 0.838 32 H 0.143 0.857 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.138 0.862 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -11.556 5.554 7.553 14.881 hybrid contribution 0.719 0.018 -0.221 0.753 sum -10.837 5.572 7.332 14.221 Atomic orbital electron populations 1.22181 0.99021 1.00025 1.00365 1.21492 0.91702 0.98010 1.03492 1.19173 0.97913 0.93413 0.90091 0.92941 1.21138 0.89977 1.37726 1.05556 0.91341 1.24925 0.98472 0.95036 0.95500 1.69859 1.34903 1.38766 1.09577 0.86448 0.85345 0.77748 0.78032 1.19612 1.20955 1.20998 1.23216 0.83129 0.74758 0.90760 1.90205 1.52330 1.50310 1.40730 1.22159 0.97795 1.01630 0.92808 1.21867 0.92596 0.94238 0.99128 1.20740 0.96534 0.99450 0.97898 1.21043 0.98925 0.98768 0.92225 1.18057 0.94131 0.99961 0.94364 1.20936 0.99717 1.00453 0.92073 1.20825 0.94757 1.00005 0.98355 1.20984 0.95972 0.99275 0.98172 1.22002 1.01638 0.97422 0.91287 1.19136 0.93196 0.96679 0.93270 0.94325 0.93960 0.93107 0.87620 0.94373 0.92907 0.83824 0.85720 0.85873 0.85936 0.86423 0.86172 0.82117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 8.33 37.16 0.31 -2.65 16 2 C -0.11 -2.49 5.23 -26.73 -0.14 -2.63 16 3 C 0.01 0.31 1.76 -92.92 -0.16 0.15 16 4 H 0.05 1.29 6.55 -51.93 -0.34 0.95 16 5 C -0.51 -13.95 8.33 -34.44 -0.29 -14.23 16 6 H 0.07 1.97 7.02 -52.48 -0.37 1.61 16 7 C 0.06 1.68 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -24.41 11.29 55.43 0.63 -23.79 16 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.40 9.08 5.85 -30.92 -0.18 8.90 16 14 O -0.46 -11.19 13.05 5.52 0.07 -11.12 16 15 C -0.14 -2.74 4.86 -102.89 -0.50 -3.24 16 16 C -0.06 -0.99 7.26 -39.04 -0.28 -1.27 16 17 C -0.13 -1.72 9.87 -40.14 -0.40 -2.12 16 18 C -0.09 -1.19 9.71 -39.46 -0.38 -1.57 16 19 C -0.07 -0.98 5.74 -106.87 -0.61 -1.60 16 20 C -0.11 -1.45 9.78 -39.45 -0.39 -1.83 16 21 C -0.12 -1.51 9.95 -39.94 -0.40 -1.91 16 22 C -0.13 -1.80 9.96 -39.87 -0.40 -2.19 16 23 C -0.11 -1.86 9.27 -39.63 -0.37 -2.23 16 24 C -0.02 -0.41 5.90 -104.74 -0.62 -1.02 16 25 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.04 0.76 5.48 -51.93 -0.28 0.48 16 27 H 0.05 0.88 6.81 -51.93 -0.35 0.53 16 28 H 0.11 2.67 5.95 -51.93 -0.31 2.36 16 29 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 31 H 0.14 2.36 4.84 -52.48 -0.25 2.11 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 37 H 0.16 3.12 5.09 -52.49 -0.27 2.85 16 LS Contribution 298.90 15.07 4.50 4.50 Total: -1.00 -29.50 298.90 -8.99 -38.48 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -4.27 Total: 3.48 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -4.90 Total: -27.88 kcal Atomic # 7 Polarization: -24.41 SS G_CDS: 0.63 Total: -23.79 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.07 Total: -11.12 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -29.50 -8.99 -38.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.024 kcal (2) G-P(sol) polarization free energy of solvation -29.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds