Wall clock time and date at job start Mon Mar 30 2020 07:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46983 * 2 1 4 4 H 1.09000 * 109.46857 * 304.99521 * 3 2 1 5 5 C 1.50699 * 109.46828 * 185.00170 * 3 2 1 6 6 H 1.08007 * 119.99614 * 239.99461 * 5 3 2 7 7 C 1.37871 * 120.00408 * 59.99879 * 5 3 2 8 8 N 1.31518 * 120.00122 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00165 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47345 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47004 * 119.99792 * 9 7 5 12 12 H 1.48500 * 109.47399 * 239.99582 * 9 7 5 13 13 C 1.50693 * 109.47248 * 64.99843 * 3 2 1 14 14 O 1.21326 * 120.00024 * 95.27705 * 13 3 2 15 15 C 1.46656 * 119.99985 * 274.99807 * 13 3 2 16 16 C 1.39244 * 120.72193 * 354.01175 * 15 13 3 17 17 C 1.38699 * 120.54093 * 179.97438 * 16 15 13 18 18 C 1.36199 * 121.86321 * 0.02562 * 17 16 15 19 19 C 1.40507 * 120.72405 * 359.97438 * 18 17 16 20 20 C 1.40562 * 121.32288 * 180.02562 * 19 18 17 21 21 C 1.36173 * 119.62182 * 179.14294 * 20 19 18 22 22 C 1.39265 * 120.99538 * 0.86069 * 21 20 19 23 23 C 1.36365 * 120.90158 * 359.41785 * 22 21 20 24 24 C 1.39911 * 119.62356 * 359.97438 * 23 22 21 25 25 H 1.08993 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47154 * 300.00619 * 1 2 3 27 27 H 1.08999 * 109.47023 * 60.00445 * 1 2 3 28 28 H 1.08997 * 109.47364 * 239.99892 * 2 1 3 29 29 H 1.08999 * 109.47023 * 119.99555 * 2 1 3 30 30 H 0.96999 * 119.99977 * 180.02562 * 8 7 5 31 31 H 1.08003 * 119.73222 * 0.02562 * 16 15 13 32 32 H 1.07999 * 119.06659 * 180.02562 * 17 16 15 33 33 H 1.08005 * 119.63633 * 179.97438 * 18 17 16 34 34 H 1.07999 * 120.18577 * 359.97438 * 20 19 18 35 35 H 1.07999 * 119.50007 * 180.25374 * 21 20 19 36 36 H 1.08001 * 119.55153 * 179.44093 * 22 21 20 37 37 H 1.08002 * 120.18719 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8890 0.6523 7 6 4.1432 0.8785 -1.2279 8 7 3.4062 0.3366 -2.1729 9 14 6.0049 0.8813 -1.3818 10 1 6.5987 1.5463 -0.1942 11 1 6.4970 -0.5175 -1.4629 12 1 6.3990 1.6167 -2.6102 13 6 1.6413 2.1163 1.2876 14 8 2.4180 2.1529 2.2190 15 6 0.3167 2.7332 1.4128 16 6 -0.5366 2.8150 0.3155 17 6 -1.7887 3.3987 0.4383 18 6 -2.2308 3.9102 1.6207 19 6 -1.4237 3.8626 2.7699 20 6 -1.8674 4.3861 3.9966 21 6 -1.0635 4.3059 5.0928 22 6 0.2012 3.7282 5.0140 23 6 0.6651 3.2159 3.8384 24 6 -0.1395 3.2701 2.6951 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8294 -0.0619 -2.9494 31 1 -0.2212 2.4199 -0.6389 32 1 -2.4314 3.4491 -0.4282 33 1 -3.2124 4.3572 1.6756 34 1 -2.8457 4.8372 4.0725 35 1 -1.4081 4.7050 6.0353 36 1 0.8230 3.6849 5.8960 37 1 1.6479 2.7708 3.7903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368416.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:48 Heat of formation + Delta-G solvation = -13.293171 kcal Electronic energy + Delta-G solvation = -19975.443254 eV Core-core repulsion = 17067.753397 eV Total energy + Delta-G solvation = -2907.689857 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.49951 -39.79863 -37.40381 -36.24291 -33.93192 -33.14629 -31.16841 -30.38495 -29.56351 -26.22273 -24.70117 -23.93496 -23.59334 -22.31535 -20.35372 -18.70170 -18.04341 -17.57658 -17.49501 -16.72187 -16.40183 -16.00730 -15.46432 -15.30202 -14.70777 -14.34926 -14.24893 -14.20856 -14.00455 -13.64008 -13.50377 -13.21096 -12.94462 -12.76344 -12.59687 -12.34916 -12.22561 -12.05644 -11.86570 -11.71449 -11.56744 -10.98573 -10.73231 -10.52434 -9.94351 -9.55180 -8.81374 -8.16623 -6.28704 -0.73701 0.11305 0.73880 1.36321 1.38568 1.51097 1.68400 2.23170 2.39942 3.09977 3.20499 3.33712 3.74513 3.93868 4.02242 4.17840 4.24873 4.40920 4.44060 4.45816 4.49461 4.56240 4.66359 4.73072 4.97761 4.98026 5.07725 5.20923 5.23181 5.26029 5.31967 5.37094 5.46679 5.57699 5.60795 5.66958 5.72786 5.91264 5.98413 6.10477 6.23863 6.75263 6.93061 7.38308 8.88067 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.026007 B = 0.005653 C = 0.004997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.377154 B = 4952.067022 C = 5602.482427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.102 4.102 3 C 0.010 3.990 4 H 0.046 0.954 5 C -0.535 4.535 6 H 0.042 0.958 7 C 0.024 3.976 8 N -0.906 5.906 9 Si 0.952 3.048 10 H -0.281 1.281 11 H -0.274 1.274 12 H -0.271 1.271 13 C 0.399 3.601 14 O -0.498 6.498 15 C -0.190 4.190 16 C -0.046 4.046 17 C -0.140 4.140 18 C -0.061 4.061 19 C -0.086 4.086 20 C -0.097 4.097 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.155 4.155 24 C -0.039 4.039 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.064 0.936 28 H 0.082 0.918 29 H 0.016 0.984 30 H 0.266 0.734 31 H 0.136 0.864 32 H 0.163 0.837 33 H 0.173 0.827 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.137 0.863 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.638 7.200 7.725 18.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.009 4.009 4 H 0.064 0.936 5 C -0.573 4.573 6 H 0.060 0.940 7 C -0.176 4.176 8 N -0.545 5.545 9 Si 0.778 3.222 10 H -0.206 1.206 11 H -0.200 1.200 12 H -0.196 1.196 13 C 0.282 3.718 14 O -0.377 6.377 15 C -0.191 4.191 16 C -0.064 4.064 17 C -0.158 4.158 18 C -0.079 4.079 19 C -0.086 4.086 20 C -0.114 4.114 21 C -0.144 4.144 22 C -0.131 4.131 23 C -0.173 4.173 24 C -0.040 4.040 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.154 0.846 32 H 0.181 0.819 33 H 0.190 0.810 34 H 0.186 0.814 35 H 0.175 0.825 36 H 0.155 0.845 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.220 7.124 8.023 18.622 hybrid contribution 1.762 -0.401 -0.302 1.832 sum -13.458 6.723 7.721 16.910 Atomic orbital electron populations 1.22031 0.95381 1.01521 1.01273 1.21310 0.94939 0.96611 1.01130 1.19123 0.96138 0.94445 0.91217 0.93625 1.21307 0.92008 1.38558 1.05436 0.94017 1.25556 1.02353 0.94550 0.95105 1.69934 1.36220 1.38603 1.09701 0.85593 0.80678 0.78070 0.77857 1.20585 1.19986 1.19639 1.23232 0.84869 0.74318 0.89392 1.90196 1.53940 1.52106 1.41473 1.21748 0.96711 1.05571 0.95081 1.21976 0.93544 0.93177 0.97726 1.21086 0.95479 0.99297 0.99889 1.21611 0.99957 0.95670 0.90653 1.18448 0.93171 1.00381 0.96626 1.21468 1.01144 0.98207 0.90598 1.21248 0.93516 0.99335 1.00297 1.21293 0.97191 0.97290 0.97311 1.21810 1.01221 1.00876 0.93351 1.19282 0.94855 0.97352 0.92473 0.92457 0.93485 0.91684 0.89974 0.96462 0.92482 0.84624 0.81912 0.80968 0.81425 0.82459 0.84485 0.85635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.45 8.33 71.98 0.60 -4.85 16 2 C -0.10 -4.92 5.23 30.60 0.16 -4.76 16 3 C 0.01 0.50 1.76 -12.29 -0.02 0.47 16 4 H 0.05 2.39 6.55 -2.39 -0.02 2.37 16 5 C -0.54 -31.54 8.33 25.60 0.21 -31.32 16 6 H 0.04 2.61 7.02 -2.91 -0.02 2.59 16 7 C 0.02 1.35 5.29 84.65 0.45 1.80 16 8 N -0.91 -50.96 11.29 21.45 0.24 -50.72 16 9 Si 0.95 45.24 29.54 68.60 2.03 47.26 16 10 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 11 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 12 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 13 C 0.40 19.56 5.85 27.88 0.16 19.72 16 14 O -0.50 -26.89 13.05 -3.17 -0.04 -26.93 16 15 C -0.19 -7.58 4.86 -18.74 -0.09 -7.68 16 16 C -0.05 -1.49 7.26 22.62 0.16 -1.33 16 17 C -0.14 -3.26 9.87 21.90 0.22 -3.04 16 18 C -0.06 -1.28 9.71 22.35 0.22 -1.07 16 19 C -0.09 -2.33 5.74 -21.32 -0.12 -2.45 16 20 C -0.10 -1.97 9.78 22.36 0.22 -1.75 16 21 C -0.13 -2.65 9.95 22.04 0.22 -2.43 16 22 C -0.11 -3.13 9.96 22.08 0.22 -2.91 16 23 C -0.15 -5.72 9.27 22.24 0.21 -5.51 16 24 C -0.04 -1.43 5.90 -19.94 -0.12 -1.55 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.73 5.48 -2.39 -0.01 1.71 16 27 H 0.06 2.24 6.81 -2.39 -0.02 2.22 16 28 H 0.08 4.34 5.95 -2.39 -0.01 4.33 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.14 4.49 4.84 -2.91 -0.01 4.48 16 32 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 33 H 0.17 1.96 8.06 -2.91 -0.02 1.94 16 34 H 0.17 1.92 8.06 -2.91 -0.02 1.90 16 35 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.14 3.15 8.06 -2.91 -0.02 3.12 16 37 H 0.13 5.46 5.09 -2.91 -0.01 5.45 16 Total: -1.00 -70.68 298.90 6.01 -64.67 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.09 Total: 14.35 kcal Atomic # 6 Polarization: -51.33 SS G_CDS: 2.69 Total: -48.64 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: 0.24 Total: -50.72 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.04 Total: -26.93 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -70.68 6.01 -64.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368416.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.379 kcal (2) G-P(sol) polarization free energy of solvation -70.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds