Wall clock time and date at job start Mon Mar 30 2020 07:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 C 1.50707 * 109.47009 * 65.00166 * 3 2 1 14 14 O 1.21264 * 120.00204 * 94.99735 * 13 3 2 15 15 C 1.47070 * 119.99677 * 275.00197 * 13 3 2 16 16 C 1.40902 * 119.78136 * 359.72832 * 15 13 3 17 17 C 1.35638 * 120.81556 * 179.70772 * 16 15 13 18 18 C 1.40770 * 120.06389 * 0.55988 * 17 16 15 19 19 C 1.40454 * 120.99968 * 179.72034 * 18 17 16 20 20 C 1.36173 * 119.72729 * 180.02562 * 19 18 17 21 21 C 1.39352 * 121.01607 * 0.02562 * 20 19 18 22 22 C 1.36093 * 120.95083 * 359.97438 * 21 20 19 23 23 C 1.40693 * 119.65782 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.77522 * 179.97438 * 15 13 3 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 1.07995 * 119.59047 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.96503 * 180.28269 * 17 16 15 33 33 H 1.07994 * 120.14088 * 0.05330 * 19 18 17 34 34 H 1.08001 * 119.48615 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.52614 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.16854 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.29568 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 6 1.6414 2.1162 1.2878 14 8 2.4158 2.1483 2.2204 15 6 0.3130 2.7348 1.4134 16 6 -0.5811 2.6998 0.3250 17 6 -1.8134 3.2585 0.4198 18 6 -2.2099 3.8938 1.6118 19 6 -3.4790 4.4838 1.7295 20 6 -3.8355 5.0921 2.8945 21 6 -2.9590 5.1402 3.9768 22 6 -1.7212 4.5798 3.9005 23 6 -1.3175 3.9425 2.7129 24 6 -0.0496 3.3537 2.6018 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 -0.2830 2.2185 -0.5947 32 1 -2.4894 3.2198 -0.4216 33 1 -4.1695 4.4549 0.8997 34 1 -4.8125 5.5441 2.9809 35 1 -3.2665 5.6292 4.8893 36 1 -1.0522 4.6241 4.7472 37 1 0.6389 3.3823 3.4334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043368476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:42 Heat of formation + Delta-G solvation = -2.793514 kcal Electronic energy + Delta-G solvation = -19635.216104 eV Core-core repulsion = 16727.981546 eV Total energy + Delta-G solvation = -2907.234558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.34119 -38.60385 -35.96612 -34.46018 -32.60761 -31.84414 -30.10795 -29.10187 -27.80583 -24.75073 -23.25596 -22.91453 -21.88315 -20.89940 -19.10512 -17.13502 -16.68026 -16.61313 -15.69541 -15.12959 -14.66504 -14.44293 -14.20813 -13.70193 -13.46196 -13.31898 -13.20666 -13.01811 -12.63518 -12.30915 -11.83424 -11.69382 -11.31604 -11.13112 -11.08317 -10.88053 -10.72591 -10.69647 -10.18463 -9.92351 -9.89140 -9.75576 -8.98436 -8.54409 -8.43019 -8.26298 -7.80310 -6.05438 -4.10393 0.50147 0.97806 2.06742 2.71072 3.33704 3.36776 3.41779 3.60164 4.31252 4.40922 4.63435 4.82303 4.83748 4.99849 5.17167 5.23641 5.26204 5.41580 5.44146 5.52729 5.82691 5.99710 6.03011 6.10503 6.13178 6.24234 6.33521 6.34106 6.44738 6.53063 6.67939 6.77631 6.83818 6.87738 6.91532 7.08559 7.13465 7.53185 7.76384 7.98145 8.23353 8.62048 8.94375 9.54219 11.00855 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.004632 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.961285 B = 6043.436418 C = 6437.867497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.109 4.109 3 C 0.012 3.988 4 H 0.053 0.947 5 C -0.508 4.508 6 H 0.067 0.933 7 C 0.062 3.938 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.396 3.604 14 O -0.462 6.462 15 C -0.147 4.147 16 C -0.067 4.067 17 C -0.132 4.132 18 C -0.034 4.034 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.095 4.095 23 C -0.067 4.067 24 C -0.057 4.057 25 H 0.043 0.957 26 H 0.038 0.962 27 H 0.052 0.948 28 H 0.038 0.962 29 H 0.106 0.894 30 H 0.262 0.738 31 H 0.147 0.853 32 H 0.128 0.872 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 6.515 6.225 16.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.147 4.147 3 C -0.007 4.007 4 H 0.071 0.929 5 C -0.546 4.546 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.531 5.531 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.274 3.726 14 O -0.337 6.337 15 C -0.148 4.148 16 C -0.085 4.085 17 C -0.150 4.150 18 C -0.034 4.034 19 C -0.130 4.130 20 C -0.134 4.134 21 C -0.148 4.148 22 C -0.113 4.113 23 C -0.067 4.067 24 C -0.075 4.075 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.056 0.944 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.164 0.836 32 H 0.146 0.854 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.894 6.436 6.537 16.650 hybrid contribution 0.829 -0.005 -0.176 0.848 sum -13.065 6.432 6.361 15.891 Atomic orbital electron populations 1.22268 0.99087 1.00015 1.00265 1.21499 0.91641 0.98094 1.03511 1.19164 0.97828 0.93390 0.90293 0.92914 1.21064 0.90051 1.37943 1.05555 0.91525 1.24920 0.98457 0.95020 0.95476 1.69834 1.35073 1.38662 1.09537 0.86557 0.85317 0.78369 0.77228 1.20142 1.21267 1.20205 1.23398 0.83340 0.74985 0.90834 1.90358 1.52212 1.49913 1.41256 1.21115 0.98048 1.01098 0.94493 1.21548 0.92652 0.95238 0.99033 1.20923 0.97229 0.99961 0.96874 1.18222 0.93892 0.97545 0.93784 1.21034 0.95393 0.98411 0.98173 1.20841 0.99550 0.99514 0.93457 1.20778 0.94312 1.00890 0.98851 1.21110 0.96574 0.96959 0.96657 1.18073 0.94364 1.00060 0.94219 1.21696 0.94439 0.93751 0.97597 0.93838 0.94291 0.92953 0.94364 0.87618 0.92795 0.83579 0.85375 0.85653 0.86241 0.86195 0.85588 0.84687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 8.23 37.16 0.31 -2.64 16 2 C -0.11 -2.51 5.23 -26.73 -0.14 -2.65 16 3 C 0.01 0.29 1.76 -92.92 -0.16 0.13 16 4 H 0.05 1.30 6.69 -51.93 -0.35 0.96 16 5 C -0.51 -14.14 8.33 -34.44 -0.29 -14.43 16 6 H 0.07 1.93 7.03 -52.48 -0.37 1.57 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -24.51 11.29 55.43 0.63 -23.88 16 9 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.40 9.00 5.87 -30.73 -0.18 8.82 16 14 O -0.46 -11.58 15.76 5.57 0.09 -11.49 16 15 C -0.15 -2.75 4.90 -105.10 -0.51 -3.27 16 16 C -0.07 -1.11 6.95 -39.50 -0.27 -1.38 16 17 C -0.13 -1.85 9.73 -39.56 -0.38 -2.24 16 18 C -0.03 -0.48 5.75 -106.74 -0.61 -1.10 16 19 C -0.11 -1.28 9.75 -39.49 -0.39 -1.66 16 20 C -0.12 -1.18 9.95 -39.91 -0.40 -1.58 16 21 C -0.13 -1.37 9.95 -39.94 -0.40 -1.77 16 22 C -0.10 -1.17 9.77 -39.43 -0.39 -1.56 16 23 C -0.07 -1.00 5.74 -106.85 -0.61 -1.61 16 24 C -0.06 -0.96 9.34 -38.62 -0.36 -1.32 16 25 H 0.04 0.78 5.32 -51.93 -0.28 0.50 16 26 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.90 6.45 -51.93 -0.34 0.57 16 28 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.11 2.67 5.95 -51.93 -0.31 2.36 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.15 2.43 4.20 -52.49 -0.22 2.21 16 32 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 33 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.14 2.22 7.61 -52.49 -0.40 1.82 16 LS Contribution 302.58 15.07 4.56 4.56 Total: -1.00 -29.88 302.58 -8.98 -38.87 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.35 Total: 2.15 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: -4.89 Total: -26.63 kcal Atomic # 7 Polarization: -24.51 SS G_CDS: 0.63 Total: -23.88 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.88 -8.98 -38.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.072 kcal (2) G-P(sol) polarization free energy of solvation -29.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds