Wall clock time and date at job start Mon Mar 30 2020 07:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47045 * 60.00218 * 9 7 5 11 11 H 1.48500 * 109.47106 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47476 * 300.00224 * 9 7 5 13 13 C 1.50707 * 109.47009 * 65.00166 * 3 2 1 14 14 O 1.21264 * 120.00204 * 94.99735 * 13 3 2 15 15 C 1.47070 * 119.99677 * 275.00197 * 13 3 2 16 16 C 1.40902 * 119.78136 * 359.72832 * 15 13 3 17 17 C 1.35638 * 120.81556 * 179.70772 * 16 15 13 18 18 C 1.40770 * 120.06389 * 0.55988 * 17 16 15 19 19 C 1.40454 * 120.99968 * 179.72034 * 18 17 16 20 20 C 1.36173 * 119.72729 * 180.02562 * 19 18 17 21 21 C 1.39352 * 121.01607 * 0.02562 * 20 19 18 22 22 C 1.36093 * 120.95083 * 359.97438 * 21 20 19 23 23 C 1.40693 * 119.65782 * 0.02562 * 22 21 20 24 24 C 1.38812 * 119.77522 * 179.97438 * 15 13 3 25 25 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 26 26 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 28 28 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 29 29 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 30 30 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 31 31 H 1.07995 * 119.59047 * 359.97438 * 16 15 13 32 32 H 1.08002 * 119.96503 * 180.28269 * 17 16 15 33 33 H 1.07994 * 120.14088 * 0.05330 * 19 18 17 34 34 H 1.08001 * 119.48615 * 180.02562 * 20 19 18 35 35 H 1.07999 * 119.52614 * 179.97438 * 21 20 19 36 36 H 1.07999 * 120.16854 * 180.02562 * 22 21 20 37 37 H 1.08001 * 120.29568 * 359.97438 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5966 0.1453 -0.2344 11 1 6.3978 0.2169 -2.6505 12 1 6.5005 2.2801 -1.3808 13 6 1.6414 2.1162 1.2878 14 8 2.4158 2.1483 2.2204 15 6 0.3130 2.7348 1.4134 16 6 -0.5811 2.6998 0.3250 17 6 -1.8134 3.2585 0.4198 18 6 -2.2099 3.8938 1.6118 19 6 -3.4790 4.4838 1.7295 20 6 -3.8355 5.0921 2.8945 21 6 -2.9590 5.1402 3.9768 22 6 -1.7212 4.5798 3.9005 23 6 -1.3175 3.9425 2.7129 24 6 -0.0496 3.3537 2.6018 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5138 -0.8900 30 1 3.8292 -0.0609 -2.9500 31 1 -0.2830 2.2185 -0.5947 32 1 -2.4894 3.2198 -0.4216 33 1 -4.1695 4.4549 0.8997 34 1 -4.8125 5.5441 2.9809 35 1 -3.2665 5.6292 4.8893 36 1 -1.0522 4.6241 4.7472 37 1 0.6389 3.3823 3.4334 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043368476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:42 Heat of formation + Delta-G solvation = -17.591668 kcal Electronic energy + Delta-G solvation = -19635.857800 eV Core-core repulsion = 16727.981546 eV Total energy + Delta-G solvation = -2907.876254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.120 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.54052 -40.14860 -37.18584 -36.31003 -33.78074 -33.63108 -31.31003 -30.19528 -29.62821 -26.38428 -24.78213 -24.10145 -22.94479 -22.43163 -20.65875 -18.63989 -18.12212 -17.99859 -17.09996 -16.80714 -16.12595 -15.76650 -15.69649 -15.22505 -14.72416 -14.59836 -14.39349 -14.23163 -14.04892 -13.99457 -13.40378 -13.20419 -12.88968 -12.81693 -12.59799 -12.31887 -12.15109 -12.11055 -11.80396 -11.64790 -11.47173 -10.98493 -10.93519 -10.54426 -10.16408 -9.52716 -8.84808 -8.15553 -6.27907 -0.64273 -0.10026 0.96387 1.39108 1.40001 1.42850 1.49396 2.29425 2.40995 3.11180 3.18695 3.31845 3.68612 3.91100 4.01108 4.17176 4.24692 4.28930 4.43013 4.46700 4.50986 4.59790 4.64154 4.81543 4.84711 4.96622 5.00959 5.17771 5.22039 5.27964 5.31977 5.33611 5.45745 5.58582 5.60494 5.63850 5.73157 5.86646 5.96645 6.07455 6.24125 6.74550 6.86315 7.38853 8.88807 Molecular weight = 268.12amu Principal moments of inertia in cm(-1) A = 0.034776 B = 0.004632 C = 0.004348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.961285 B = 6043.436418 C = 6437.867497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.102 4.102 3 C 0.008 3.992 4 H 0.047 0.953 5 C -0.540 4.540 6 H 0.042 0.958 7 C 0.025 3.975 8 N -0.905 5.905 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.272 1.272 12 H -0.274 1.274 13 C 0.397 3.603 14 O -0.503 6.503 15 C -0.174 4.174 16 C -0.086 4.086 17 C -0.115 4.115 18 C -0.046 4.046 19 C -0.116 4.116 20 C -0.106 4.106 21 C -0.119 4.119 22 C -0.114 4.114 23 C -0.084 4.084 24 C -0.057 4.057 25 H 0.049 0.951 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.018 0.982 29 H 0.082 0.918 30 H 0.266 0.734 31 H 0.139 0.861 32 H 0.163 0.837 33 H 0.156 0.844 34 H 0.157 0.843 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.682 7.917 6.429 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.141 4.141 3 C -0.011 4.011 4 H 0.065 0.935 5 C -0.577 4.577 6 H 0.060 0.940 7 C -0.175 4.175 8 N -0.543 5.543 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.197 1.197 12 H -0.200 1.200 13 C 0.279 3.721 14 O -0.382 6.382 15 C -0.175 4.175 16 C -0.104 4.104 17 C -0.133 4.133 18 C -0.046 4.046 19 C -0.134 4.134 20 C -0.123 4.123 21 C -0.136 4.136 22 C -0.131 4.131 23 C -0.084 4.084 24 C -0.076 4.076 25 H 0.068 0.932 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.037 0.963 29 H 0.100 0.900 30 H 0.075 0.925 31 H 0.156 0.844 32 H 0.180 0.820 33 H 0.173 0.827 34 H 0.175 0.825 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -17.264 7.837 6.725 20.117 hybrid contribution 1.689 -0.309 -0.140 1.722 sum -15.576 7.528 6.584 18.510 Atomic orbital electron populations 1.22126 0.95344 1.01519 1.01300 1.21321 0.94965 0.96538 1.01234 1.19126 0.96092 0.94525 0.91308 0.93539 1.21269 0.92071 1.38860 1.05540 0.93960 1.25558 1.02379 0.94516 0.95076 1.69916 1.36382 1.38434 1.09616 0.85707 0.80631 0.78396 0.77504 1.20397 1.19702 1.19968 1.23461 0.84951 0.74265 0.89451 1.90318 1.53927 1.51898 1.42088 1.20700 0.96501 1.03688 0.96592 1.21409 0.93653 0.97253 0.98048 1.21260 0.96295 0.97789 0.97913 1.18552 0.95061 0.97686 0.93298 1.21389 0.94451 0.97756 0.99815 1.21357 1.00799 0.97719 0.92448 1.21243 0.93150 0.98986 1.00241 1.21326 0.98030 0.97557 0.96232 1.18263 0.93597 1.00638 0.95939 1.21728 0.95580 0.93636 0.96622 0.93222 0.92429 0.91556 0.96313 0.89969 0.92456 0.84377 0.81991 0.82667 0.82516 0.82984 0.84557 0.85582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 8.23 71.98 0.59 -4.83 16 2 C -0.10 -4.91 5.23 30.59 0.16 -4.75 16 3 C 0.01 0.43 1.76 -12.29 -0.02 0.41 16 4 H 0.05 2.43 6.69 -2.39 -0.02 2.42 16 5 C -0.54 -31.73 8.33 25.60 0.21 -31.52 16 6 H 0.04 2.63 7.03 -2.91 -0.02 2.60 16 7 C 0.02 1.38 5.29 84.66 0.45 1.83 16 8 N -0.90 -50.86 11.29 21.45 0.24 -50.62 16 9 Si 0.95 45.07 29.54 68.60 2.03 47.09 16 10 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 11 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 12 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 13 C 0.40 19.26 5.87 28.01 0.16 19.42 16 14 O -0.50 -27.21 15.76 -2.98 -0.05 -27.25 16 15 C -0.17 -6.80 4.90 -20.17 -0.10 -6.90 16 16 C -0.09 -2.83 6.95 22.32 0.16 -2.68 16 17 C -0.12 -2.98 9.73 22.29 0.22 -2.76 16 18 C -0.05 -1.17 5.75 -21.23 -0.12 -1.29 16 19 C -0.12 -2.10 9.75 22.33 0.22 -1.88 16 20 C -0.11 -1.58 9.95 22.06 0.22 -1.36 16 21 C -0.12 -1.96 9.95 22.04 0.22 -1.74 16 22 C -0.11 -2.54 9.77 22.37 0.22 -2.32 16 23 C -0.08 -2.41 5.74 -21.31 -0.12 -2.53 16 24 C -0.06 -2.00 9.34 22.89 0.21 -1.79 16 25 H 0.05 1.79 5.32 -2.39 -0.01 1.78 16 26 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.07 2.26 6.45 -2.38 -0.02 2.25 16 28 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 4.32 5.95 -2.39 -0.01 4.30 16 30 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.14 4.67 4.20 -2.91 -0.01 4.66 16 32 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.16 1.86 8.06 -2.91 -0.02 1.84 16 34 H 0.16 1.25 8.06 -2.91 -0.02 1.23 16 35 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 36 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 37 H 0.13 4.45 7.61 -2.91 -0.02 4.43 16 Total: -1.00 -68.71 302.58 5.98 -62.73 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: 1.08 Total: 12.74 kcal Atomic # 6 Polarization: -47.36 SS G_CDS: 2.67 Total: -44.69 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.24 Total: -50.62 kcal Atomic # 8 Polarization: -27.21 SS G_CDS: -0.05 Total: -27.25 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.71 5.98 -62.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043368476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.137 kcal (2) G-P(sol) polarization free energy of solvation -68.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds