Wall clock time and date at job start Mon Mar 30 2020 06:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 C 1.52997 * 109.47225 * 120.00245 * 2 1 3 5 5 N 1.46504 * 109.46924 * 65.00020 * 4 2 1 6 6 C 1.46493 * 119.99782 * 269.99642 * 5 4 2 7 7 C 1.50706 * 109.47197 * 270.00372 * 6 5 4 8 8 H 1.07993 * 120.00478 * 0.02562 * 7 6 5 9 9 C 1.37875 * 119.99634 * 180.02562 * 7 6 5 10 10 N 1.31521 * 120.00504 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99815 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47057 * 60.00255 * 11 9 7 13 13 H 1.48498 * 109.47258 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.47280 * 300.00366 * 11 9 7 15 15 C 1.39063 * 119.99898 * 90.00154 * 5 4 2 16 16 C 1.39127 * 119.68869 * 184.99697 * 15 5 4 17 17 C 1.38305 * 119.10757 * 179.97438 * 16 15 5 18 18 C 1.38963 * 118.49809 * 0.02562 * 17 16 15 19 19 Cl 1.73596 * 120.35059 * 179.97438 * 18 17 16 20 20 C 1.38130 * 119.30345 * 0.02562 * 18 17 16 21 21 N 1.31984 * 120.83661 * 359.97438 * 20 18 17 22 22 H 1.08996 * 109.47361 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46864 * 299.99907 * 1 2 3 24 24 H 1.09005 * 109.46998 * 59.99517 * 1 2 3 25 25 H 1.09002 * 109.46561 * 240.00452 * 2 1 3 26 26 H 1.09001 * 109.47746 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.47508 * 300.00171 * 3 2 1 28 28 H 1.09005 * 109.47184 * 59.99974 * 3 2 1 29 29 H 1.08998 * 109.46826 * 304.99912 * 4 2 1 30 30 H 1.09003 * 109.46900 * 184.99891 * 4 2 1 31 31 H 1.09002 * 109.47125 * 30.00557 * 6 5 4 32 32 H 1.09002 * 109.47336 * 150.00177 * 6 5 4 33 33 H 0.97001 * 119.99657 * 180.02562 * 10 9 7 34 34 H 1.07997 * 120.44654 * 0.27227 * 16 15 5 35 35 H 1.07998 * 120.75079 * 180.02562 * 17 16 15 36 36 H 1.07998 * 119.57809 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1904 6 6 0.3747 -2.5660 1.7611 7 6 0.5718 -2.9409 3.2074 8 1 1.5508 -2.8639 3.6567 9 6 -0.4979 -3.3823 3.9571 10 7 -1.6904 -3.4756 3.4102 11 14 -0.2535 -3.8477 5.7496 12 1 0.2508 -2.6710 6.5022 13 1 -1.5488 -4.2865 6.3281 14 1 0.7317 -4.9547 5.8437 15 6 2.4976 -3.0617 0.5929 16 6 2.0790 -4.3805 0.4471 17 6 2.9290 -5.2940 -0.1493 18 6 4.1751 -4.8563 -0.5814 19 17 5.2803 -5.9623 -1.3357 20 6 4.5256 -3.5321 -0.4035 21 7 3.6932 -2.6830 0.1693 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 3.1300 1.4426 -0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -0.2618 2.1369 30 1 3.1264 -0.6444 1.2950 31 1 -0.3483 -1.7532 1.6917 32 1 0.0042 -3.4298 1.2091 33 1 -2.4429 -3.7858 3.9378 34 1 1.1017 -4.6856 0.7906 35 1 2.6311 -6.3243 -0.2763 36 1 5.4931 -3.1873 -0.7373 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043419761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:05 Heat of formation + Delta-G solvation = 20.470771 kcal Electronic energy + Delta-G solvation = -18410.800118 eV Core-core repulsion = 15534.434277 eV Total energy + Delta-G solvation = -2876.365841 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80484 -37.18010 -36.05580 -34.13140 -32.62371 -31.88784 -29.39430 -27.76190 -26.77104 -25.14571 -23.35262 -22.68600 -20.78455 -19.66849 -17.02807 -16.61825 -16.27169 -15.57732 -14.87624 -14.51526 -14.36504 -14.08809 -13.53890 -13.31046 -12.88053 -12.50946 -12.25192 -11.97129 -11.91835 -11.79367 -11.46433 -11.32385 -11.07606 -10.94362 -10.84462 -10.64594 -10.40039 -10.25393 -10.13436 -9.82850 -9.34635 -8.99743 -8.91885 -8.56279 -6.81354 -6.16117 -4.26985 1.70292 1.78551 2.54687 3.23292 3.28073 3.31167 3.77526 4.29023 4.35607 4.92642 5.13492 5.22449 5.25042 5.31459 5.46187 5.56038 5.62399 5.88458 5.95962 6.03247 6.17419 6.18993 6.26428 6.34306 6.35152 6.42675 6.50438 6.67352 6.74324 6.89370 7.01777 7.17686 7.63601 7.81907 8.04584 8.23480 8.59632 8.83975 9.40338 10.86325 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013093 B = 0.006864 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.002648 B = 4078.436267 C = 5695.873584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.141 4.141 4 C 0.132 3.868 5 N -0.577 5.577 6 C 0.245 3.755 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.065 3.935 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.276 1.276 15 C 0.421 3.579 16 C -0.216 4.216 17 C -0.030 4.030 18 C -0.173 4.173 19 Cl -0.090 7.090 20 C 0.162 3.838 21 N -0.545 5.545 22 H 0.065 0.935 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.036 0.964 33 H 0.266 0.734 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.465 2.076 -7.798 10.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.129 4.129 3 C -0.199 4.199 4 C 0.008 3.992 5 N -0.283 5.283 6 C 0.125 3.875 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.138 4.138 10 N -0.531 5.531 11 Si 0.724 3.276 12 H -0.201 1.201 13 H -0.211 1.211 14 H -0.201 1.201 15 C 0.184 3.816 16 C -0.241 4.241 17 C -0.056 4.056 18 C -0.206 4.206 19 Cl -0.062 7.062 20 C 0.002 3.998 21 N -0.264 5.264 22 H 0.084 0.916 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.393 2.968 -7.569 10.989 hybrid contribution -0.131 -1.339 0.904 1.621 sum 7.262 1.629 -6.665 9.991 Atomic orbital electron populations 1.21942 0.95161 1.02632 1.00776 1.21506 0.96243 0.95726 0.99431 1.21746 1.00764 0.96024 1.01338 1.21370 1.00193 0.80812 0.96792 1.47207 1.19642 1.04872 1.56536 1.19576 0.78389 0.96522 0.92986 1.21501 0.95399 1.45002 0.95653 0.92240 1.24926 0.94932 0.95206 0.98717 1.69909 0.99835 1.46447 1.36936 0.86570 0.77425 0.79082 0.84497 1.20147 1.21109 1.20112 1.18558 0.87194 0.88067 0.87819 1.21648 1.03043 0.92701 1.06702 1.21127 0.91136 0.99743 0.93618 1.21450 0.94608 0.92535 1.12005 1.98298 1.63129 1.63419 1.81389 1.22172 0.97694 0.87336 0.92624 1.67356 1.03750 1.37038 1.18227 0.91605 0.92705 0.93809 0.91573 0.92802 0.93110 0.92772 0.90833 0.90624 0.93454 0.94593 0.92449 0.83378 0.84939 0.83139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.18 37.16 0.30 -2.02 16 2 C -0.11 -1.68 3.13 -90.62 -0.28 -1.97 16 3 C -0.14 -1.78 9.19 37.16 0.34 -1.44 16 4 C 0.13 2.35 4.96 -4.04 -0.02 2.33 16 5 N -0.58 -11.73 2.40 -175.20 -0.42 -12.15 16 6 C 0.24 5.69 4.08 -5.19 -0.02 5.67 16 7 C -0.54 -13.97 9.39 -34.44 -0.32 -14.29 16 8 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.89 -24.45 13.29 55.43 0.74 -23.71 16 11 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 15 C 0.42 8.34 7.37 -154.99 -1.14 7.20 16 16 C -0.22 -4.10 9.27 -39.23 -0.36 -4.46 16 17 C -0.03 -0.50 9.97 -39.29 -0.39 -0.89 16 18 C -0.17 -2.71 6.34 -39.35 -0.25 -2.96 16 19 Cl -0.09 -1.22 28.98 -51.86 -1.50 -2.72 16 20 C 0.16 2.58 10.97 -17.53 -0.19 2.39 16 21 N -0.54 -9.99 9.08 -12.40 -0.11 -10.10 16 22 H 0.06 1.18 5.89 -51.93 -0.31 0.87 16 23 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.08 1.33 7.30 -51.93 -0.38 0.96 16 31 H 0.05 1.14 5.98 -51.93 -0.31 0.83 16 32 H 0.04 0.88 5.97 -51.93 -0.31 0.57 16 33 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 34 H 0.15 2.99 6.02 -52.49 -0.32 2.67 16 35 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 36 H 0.15 1.98 8.06 -52.49 -0.42 1.56 16 LS Contribution 313.25 15.07 4.72 4.72 Total: -1.00 -26.56 313.25 -9.01 -35.57 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.97 Total: 1.53 kcal Atomic # 6 Polarization: -6.38 SS G_CDS: -2.44 Total: -8.82 kcal Atomic # 7 Polarization: -46.17 SS G_CDS: 0.20 Total: -45.96 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 17 Polarization: -1.22 SS G_CDS: -1.50 Total: -2.72 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -26.56 -9.01 -35.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.038 kcal (2) G-P(sol) polarization free energy of solvation -26.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds