Wall clock time and date at job start Mon Mar 30 2020 06:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47106 * 2 1 4 4 C 1.53000 * 109.46644 * 120.00175 * 2 1 3 5 5 N 1.46896 * 109.47317 * 65.00060 * 4 2 1 6 6 C 1.46898 * 110.99765 * 193.95068 * 5 4 2 7 7 C 1.50693 * 109.47368 * 71.80856 * 6 5 4 8 8 H 1.07998 * 120.00227 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00231 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00162 * 179.97438 * 9 7 6 11 11 Si 1.86802 * 120.00024 * 0.02562 * 9 7 6 12 12 H 1.48493 * 109.47190 * 89.99894 * 11 9 7 13 13 H 1.48497 * 109.47067 * 209.99854 * 11 9 7 14 14 H 1.48505 * 109.47044 * 329.99776 * 11 9 7 15 15 C 1.39069 * 111.00116 * 69.99940 * 5 4 2 16 16 N 1.32397 * 119.71694 * 57.51437 * 15 5 4 17 17 C 1.31955 * 121.63791 * 180.02562 * 16 15 5 18 18 C 1.38050 * 120.87772 * 359.97438 * 17 16 15 19 19 C 1.38843 * 119.33862 * 0.28689 * 18 17 16 20 20 C 1.38424 * 118.49177 * 359.42842 * 19 18 17 21 21 Cl 1.73604 * 120.46039 * 180.26176 * 20 19 18 22 22 H 1.09002 * 109.47059 * 59.99853 * 1 2 3 23 23 H 1.09004 * 109.47350 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.46857 * 300.00065 * 1 2 3 25 25 H 1.09000 * 109.46857 * 239.99935 * 2 1 3 26 26 H 1.09000 * 109.46970 * 179.97438 * 3 2 1 27 27 H 1.09002 * 109.47282 * 300.00010 * 3 2 1 28 28 H 1.09000 * 109.47315 * 60.00216 * 3 2 1 29 29 H 1.08996 * 109.47619 * 304.99349 * 4 2 1 30 30 H 1.09010 * 109.46435 * 184.99954 * 4 2 1 31 31 H 1.09006 * 109.47148 * 191.80564 * 6 5 4 32 32 H 1.09003 * 109.47278 * 311.80406 * 6 5 4 33 33 H 0.97001 * 120.00104 * 180.02562 * 10 9 7 34 34 H 1.07995 * 119.56117 * 180.02562 * 17 16 15 35 35 H 1.08004 * 120.33163 * 180.02562 * 18 17 16 36 36 H 1.08006 * 120.75460 * 179.72025 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 1.6513 -2.1367 1.1904 6 6 1.8245 -2.7849 2.4972 7 6 0.7647 -2.2905 3.4476 8 1 0.0356 -1.5668 3.1144 9 6 0.7257 -2.7621 4.7426 10 7 -0.1989 -2.3302 5.5722 11 14 1.9871 -4.0133 5.3194 12 1 3.1678 -3.3055 5.8761 13 1 1.3859 -4.8746 6.3691 14 1 2.4104 -4.8548 4.1712 15 6 2.3634 -2.8084 0.2026 16 7 3.6868 -2.8191 0.2400 17 6 4.4001 -3.4439 -0.6776 18 6 3.7867 -4.1142 -1.7169 19 6 2.4005 -4.1232 -1.7966 20 6 1.6785 -3.4644 -0.8164 21 17 -0.0568 -3.4488 -0.8623 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 1.6054 -0.2618 2.1370 30 1 3.1263 -0.6444 1.2951 31 1 1.7337 -3.8650 2.3819 32 1 2.8103 -2.5435 2.8947 33 1 -0.2260 -2.6617 6.4834 34 1 5.4781 -3.4314 -0.6143 35 1 4.3791 -4.6230 -2.4630 36 1 1.8970 -4.6366 -2.6024 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043419791.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:07 Heat of formation + Delta-G solvation = 13.021586 kcal Electronic energy + Delta-G solvation = -18882.416644 eV Core-core repulsion = 16005.727782 eV Total energy + Delta-G solvation = -2876.688862 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.104 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.55271 -38.61718 -37.39390 -35.72475 -34.55545 -33.16989 -31.42420 -29.38277 -27.92167 -26.62465 -24.65526 -24.12919 -22.34907 -20.94936 -19.09381 -17.99153 -17.71157 -16.99699 -16.94135 -16.19410 -15.52853 -15.44541 -14.92549 -14.77057 -14.43089 -14.28526 -13.97648 -13.59321 -13.25824 -13.05457 -12.90862 -12.81190 -12.69209 -12.60938 -12.14226 -11.92371 -11.69264 -11.63856 -11.50758 -11.43671 -10.80979 -10.68809 -10.56998 -9.69950 -9.35652 -8.29597 -6.31673 -0.01867 0.19116 1.25223 1.29841 1.30761 1.41387 2.30820 2.67073 2.80462 3.03503 3.58678 3.88414 3.92437 4.04527 4.10847 4.19036 4.38976 4.45932 4.63796 4.71035 4.75059 4.84532 4.90257 4.96276 4.99046 5.04960 5.09440 5.15029 5.24998 5.45453 5.48377 5.50869 5.63247 5.92858 6.26577 6.64680 6.73823 6.92699 7.30386 8.86514 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.015206 B = 0.008138 C = 0.007005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.913317 B = 3439.727042 C = 3996.286255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.078 4.078 3 C -0.138 4.138 4 C 0.076 3.924 5 N -0.479 5.479 6 C 0.193 3.807 7 C -0.506 4.506 8 H 0.047 0.953 9 C 0.017 3.983 10 N -0.940 5.940 11 Si 0.937 3.063 12 H -0.267 1.267 13 H -0.276 1.276 14 H -0.262 1.262 15 C 0.291 3.709 16 N -0.532 5.532 17 C 0.099 3.901 18 C -0.154 4.154 19 C -0.065 4.065 20 C -0.082 4.082 21 Cl -0.049 7.049 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.037 0.963 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.034 0.966 31 H 0.012 0.988 32 H -0.011 1.011 33 H 0.267 0.733 34 H 0.188 0.812 35 H 0.188 0.812 36 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.752 -1.943 -18.328 20.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.097 4.097 3 C -0.195 4.195 4 C -0.051 4.051 5 N -0.201 5.201 6 C 0.067 3.933 7 C -0.544 4.544 8 H 0.066 0.934 9 C -0.181 4.181 10 N -0.581 5.581 11 Si 0.761 3.239 12 H -0.192 1.192 13 H -0.202 1.202 14 H -0.187 1.187 15 C 0.062 3.938 16 N -0.245 5.245 17 C -0.059 4.059 18 C -0.173 4.173 19 C -0.091 4.091 20 C -0.113 4.113 21 Cl -0.020 7.020 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.056 0.944 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.092 0.908 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.007 0.993 33 H 0.076 0.924 34 H 0.205 0.795 35 H 0.206 0.794 36 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.432 -1.530 -17.562 19.541 hybrid contribution 0.321 -0.808 0.600 1.057 sum 8.754 -2.339 -16.962 19.230 Atomic orbital electron populations 1.21740 0.94763 1.02416 1.00528 1.20970 0.96609 0.96216 0.95906 1.21747 1.00767 0.94601 1.02411 1.22097 0.97449 0.86387 0.99152 1.60107 1.51914 1.02872 1.05229 1.19751 0.94510 0.93495 0.85497 1.21090 1.13388 1.24974 0.94974 0.93430 1.25651 0.97498 0.98291 0.96673 1.70015 1.35833 1.45756 1.06490 0.85871 0.79634 0.79817 0.78549 1.19234 1.20162 1.18653 1.20039 0.87148 0.93891 0.92682 1.67971 1.07515 1.20573 1.28478 1.23331 1.01628 0.91667 0.89273 1.22535 0.93926 1.00376 1.00491 1.21922 0.94738 0.95629 0.96849 1.21975 0.86747 1.03960 0.98595 1.98359 1.08468 1.97151 1.98019 0.91918 0.92385 0.94413 0.92731 0.92654 0.90833 0.92886 0.91989 0.94762 0.96949 0.99294 0.92355 0.79540 0.79440 0.80798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.66 9.08 71.98 0.65 -4.00 16 2 C -0.08 -2.58 2.90 -10.80 -0.03 -2.61 16 3 C -0.14 -3.71 9.19 71.98 0.66 -3.04 16 4 C 0.08 3.10 4.14 86.30 0.36 3.46 16 5 N -0.48 -20.96 3.27 -706.06 -2.31 -23.26 16 6 C 0.19 9.90 3.64 85.56 0.31 10.21 16 7 C -0.51 -29.87 8.95 25.60 0.23 -29.64 16 8 H 0.05 3.09 7.86 -2.91 -0.02 3.07 16 9 C 0.02 1.00 5.47 84.66 0.46 1.47 16 10 N -0.94 -59.22 13.96 21.45 0.30 -58.92 16 11 Si 0.94 45.83 27.47 68.60 1.88 47.71 16 12 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 13 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 14 H -0.26 -12.44 6.54 99.48 0.65 -11.78 16 15 C 0.29 10.89 4.24 133.06 0.56 11.45 16 16 N -0.53 -18.33 9.49 -193.15 -1.83 -20.16 16 17 C 0.10 2.33 11.17 84.63 0.95 3.28 16 18 C -0.15 -2.73 10.10 22.37 0.23 -2.50 16 19 C -0.06 -1.42 9.97 22.46 0.22 -1.20 16 20 C -0.08 -2.61 6.36 22.55 0.14 -2.46 16 21 Cl -0.05 -1.61 26.91 -2.72 -0.07 -1.68 16 22 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 23 H 0.06 2.18 6.10 -2.38 -0.01 2.17 16 24 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.79 7.39 -2.39 -0.02 1.78 16 26 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 28 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.06 2.88 7.06 -2.39 -0.02 2.86 16 30 H 0.03 1.39 7.51 -2.38 -0.02 1.38 16 31 H 0.01 0.66 7.03 -2.38 -0.02 0.64 16 32 H -0.01 -0.56 7.48 -2.39 -0.02 -0.58 16 33 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.19 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.19 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.17 2.61 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -70.81 310.69 3.72 -67.09 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.00 Total: 4.82 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: 4.75 Total: -15.59 kcal Atomic # 7 Polarization: -98.51 SS G_CDS: -3.84 Total: -102.35 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.71 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.07 Total: -1.68 kcal Total: -70.81 3.72 -67.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043419791.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.109 kcal (2) G-P(sol) polarization free energy of solvation -70.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds