Wall clock time and date at job start Mon Mar 30 2020 07:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38879 * 120.74817 * 2 1 4 4 C 1.38041 * 119.33073 * 180.31415 * 3 2 1 5 5 N 1.31967 * 120.85277 * 359.68402 * 4 3 2 6 6 C 1.32414 * 121.62088 * 0.02562 * 5 4 3 7 7 N 1.39088 * 119.70339 * 179.97438 * 6 5 4 8 8 C 1.46499 * 119.99860 * 265.01492 * 7 6 5 9 9 C 1.50696 * 109.47220 * 89.99911 * 8 7 6 10 10 H 1.08002 * 120.00158 * 359.97438 * 9 8 7 11 11 C 1.37883 * 120.00175 * 180.02562 * 9 8 7 12 12 N 1.31515 * 119.99733 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00130 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.47048 * 0.02562 * 13 11 9 15 15 H 1.48507 * 109.47073 * 119.99870 * 13 11 9 16 16 H 1.48500 * 109.47343 * 239.99590 * 13 11 9 17 17 C 1.39761 * 120.00192 * 85.01156 * 7 6 5 18 18 C 1.38910 * 120.07616 * 185.19731 * 17 7 6 19 19 C 1.38103 * 119.92545 * 179.79522 * 18 17 7 20 20 C 1.38292 * 120.07257 * 0.46047 * 19 18 17 21 21 C 1.38287 * 120.14788 * 359.78956 * 20 19 18 22 22 C 1.38097 * 120.07627 * 359.97438 * 21 20 19 23 23 C 1.38297 * 120.74233 * 179.72572 * 2 1 3 24 24 H 1.08996 * 109.47244 * 270.27644 * 1 2 3 25 25 H 1.09002 * 109.46845 * 30.26803 * 1 2 3 26 26 H 1.08999 * 109.47234 * 150.26820 * 1 2 3 27 27 H 1.08001 * 120.33769 * 0.04502 * 3 2 1 28 28 H 1.07996 * 119.57711 * 179.70014 * 4 3 2 29 29 H 1.08991 * 109.47053 * 210.00016 * 8 7 6 30 30 H 1.09000 * 109.46970 * 329.99820 * 8 7 6 31 31 H 0.97001 * 120.00042 * 180.02562 * 12 11 9 32 32 H 1.08002 * 120.03799 * 0.02562 * 18 17 7 33 33 H 1.07995 * 119.95923 * 180.23106 * 19 18 17 34 34 H 1.07997 * 119.92012 * 179.77156 * 20 19 18 35 35 H 1.08004 * 119.95499 * 179.97438 * 21 20 19 36 36 H 1.08009 * 120.03342 * 179.97438 * 22 21 20 37 37 H 1.07999 * 120.45652 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2171 1.1936 0.0000 4 6 3.5971 1.1594 -0.0066 5 7 4.2456 0.0101 -0.0066 6 6 3.6048 -1.1486 -0.0009 7 7 4.3285 -2.3364 -0.0017 8 6 4.6094 -3.0221 -1.2655 9 6 5.9137 -2.5211 -1.8298 10 1 6.4770 -1.7669 -1.3003 11 6 6.3876 -3.0247 -3.0227 12 7 5.7014 -3.9427 -3.6677 13 14 8.0041 -2.4031 -3.7226 14 1 8.5767 -1.3794 -2.8119 15 1 8.9552 -3.5361 -3.8533 16 1 7.7659 -1.8003 -5.0586 17 6 4.7879 -2.8757 1.2031 18 6 5.6013 -4.0017 1.1965 19 6 6.0569 -4.5295 2.3886 20 6 5.6964 -3.9439 3.5884 21 6 4.8825 -2.8260 3.5988 22 6 4.4274 -2.2902 2.4101 23 6 2.2140 -1.1886 0.0057 24 1 -0.3633 0.0050 1.0276 25 1 -0.3633 0.8876 -0.5180 26 1 -0.3633 -0.8924 -0.5097 27 1 1.6949 2.1389 0.0007 28 1 4.1532 2.0852 -0.0115 29 1 4.6783 -4.0954 -1.0889 30 1 3.8059 -2.8214 -1.9741 31 1 6.0349 -4.2973 -4.5067 32 1 5.8803 -4.4616 0.2600 33 1 6.6924 -5.4026 2.3839 34 1 6.0510 -4.3609 4.5194 35 1 4.6025 -2.3715 4.5376 36 1 3.7913 -1.4173 2.4190 37 1 1.6937 -2.1350 0.0106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043561315.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:46:37 Heat of formation + Delta-G solvation = 70.742893 kcal Electronic energy + Delta-G solvation = -19754.126719 eV Core-core repulsion = 16882.373690 eV Total energy + Delta-G solvation = -2871.753029 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.17537 -38.55269 -35.68349 -33.58642 -32.69989 -30.65583 -30.08484 -28.83968 -27.67406 -26.50034 -23.48347 -22.68601 -22.24574 -21.26404 -19.81673 -17.22618 -16.67867 -16.07718 -15.98360 -15.54751 -15.05375 -14.26085 -14.23944 -14.05817 -13.55892 -13.14064 -12.93536 -12.83857 -12.53842 -12.42412 -12.37392 -12.09040 -11.58278 -11.26837 -11.06335 -10.84814 -10.71609 -10.31937 -10.16950 -9.96817 -9.23319 -9.13574 -8.89462 -8.61111 -8.47700 -8.31621 -6.69790 -6.04905 -4.12912 1.39633 1.56005 2.04733 2.22281 3.28739 3.36429 3.43901 3.74013 4.08245 4.42686 4.51261 4.84877 4.92576 5.16310 5.25261 5.29648 5.43429 5.48325 5.52493 5.52815 5.62763 5.74990 5.85946 6.03962 6.05118 6.24118 6.26070 6.33839 6.48343 6.58296 6.79549 6.99414 7.04990 7.12125 7.19007 7.28616 7.54726 7.86634 8.11557 8.21156 8.34245 8.56874 8.97780 9.53133 10.98622 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.011889 B = 0.008159 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.559220 B = 3431.154268 C = 5018.910970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.042 4.042 3 C -0.191 4.191 4 C 0.112 3.888 5 N -0.482 5.482 6 C 0.391 3.609 7 N -0.570 5.570 8 C 0.257 3.743 9 C -0.524 4.524 10 H 0.067 0.933 11 C 0.060 3.940 12 N -0.898 5.898 13 Si 0.896 3.104 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.239 3.761 18 C -0.174 4.174 19 C -0.080 4.080 20 C -0.192 4.192 21 C -0.083 4.083 22 C -0.200 4.200 23 C -0.171 4.171 24 H 0.073 0.927 25 H 0.069 0.931 26 H 0.070 0.930 27 H 0.130 0.870 28 H 0.151 0.849 29 H 0.043 0.957 30 H 0.030 0.970 31 H 0.263 0.737 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.105 0.895 37 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.256 5.377 9.913 13.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.051 4.051 3 C -0.211 4.211 4 C -0.047 4.047 5 N -0.193 5.193 6 C 0.165 3.835 7 N -0.277 5.277 8 C 0.139 3.861 9 C -0.563 4.563 10 H 0.085 0.915 11 C -0.141 4.141 12 N -0.538 5.538 13 Si 0.724 3.276 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.211 1.211 17 C 0.136 3.864 18 C -0.196 4.196 19 C -0.099 4.099 20 C -0.213 4.213 21 C -0.101 4.101 22 C -0.223 4.223 23 C -0.193 4.193 24 H 0.092 0.908 25 H 0.088 0.912 26 H 0.089 0.911 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.154 0.846 33 H 0.133 0.867 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.123 0.877 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.390 5.306 9.534 13.178 hybrid contribution 0.104 0.445 -0.679 0.819 sum -7.286 5.751 8.854 12.828 Atomic orbital electron populations 1.20786 0.90487 1.03128 1.02512 1.20168 0.96456 0.92651 0.95801 1.21935 0.95684 0.98240 1.05220 1.22563 0.91436 0.95670 0.94987 1.67651 1.41990 0.98227 1.11453 1.18087 0.87278 0.85967 0.92203 1.44438 1.56954 1.19925 1.06339 1.19384 0.96567 0.92526 0.77652 1.21654 1.05821 1.22861 1.05996 0.91518 1.24950 0.97628 0.94974 0.96596 1.69940 1.38658 1.28574 1.16588 0.86450 0.83466 0.78847 0.78822 1.19583 1.20884 1.21056 1.17815 0.91483 0.92050 0.85020 1.20954 1.01175 0.98172 0.99265 1.20852 0.98248 0.98789 0.92043 1.20728 1.03969 0.99194 0.97380 1.20671 0.97088 0.95822 0.96565 1.20531 1.07083 1.03035 0.91634 1.22140 0.94498 0.98897 1.03788 0.90824 0.91225 0.91106 0.85240 0.83133 0.93871 0.95221 0.92774 0.84560 0.86722 0.87349 0.87235 0.87665 0.84958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.12 10.06 36.01 0.36 -0.76 16 2 C -0.04 -0.59 5.91 -104.36 -0.62 -1.21 16 3 C -0.19 -2.56 9.81 -39.42 -0.39 -2.94 16 4 C 0.11 1.78 11.17 -17.57 -0.20 1.58 16 5 N -0.48 -9.93 10.40 -12.41 -0.13 -10.06 16 6 C 0.39 8.08 4.49 -154.92 -0.70 7.38 16 7 N -0.57 -12.87 2.68 -114.88 -0.31 -13.18 16 8 C 0.26 6.59 4.79 -5.20 -0.02 6.57 16 9 C -0.52 -14.77 9.34 -34.44 -0.32 -15.09 16 10 H 0.07 1.98 7.81 -52.49 -0.41 1.57 16 11 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.90 -26.02 13.29 55.43 0.74 -25.28 16 13 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 14 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 17 C 0.24 5.06 6.52 -83.74 -0.55 4.52 16 18 C -0.17 -3.57 9.17 -39.38 -0.36 -3.93 16 19 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 20 C -0.19 -3.08 10.04 -39.54 -0.40 -3.48 16 21 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 22 C -0.20 -3.77 9.31 -39.38 -0.37 -4.14 16 23 C -0.17 -2.94 9.72 -39.22 -0.38 -3.32 16 24 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.59 8.10 -51.93 -0.42 0.17 16 26 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 27 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 28 H 0.15 1.93 8.06 -52.49 -0.42 1.51 16 29 H 0.04 1.14 6.43 -51.93 -0.33 0.80 16 30 H 0.03 0.81 8.05 -51.93 -0.42 0.39 16 31 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 32 H 0.14 3.04 6.26 -52.49 -0.33 2.71 16 33 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 36 H 0.11 1.96 7.01 -52.48 -0.37 1.59 16 37 H 0.13 2.14 8.06 -52.49 -0.42 1.72 16 LS Contribution 319.66 15.07 4.82 4.82 Total: -1.00 -31.19 319.66 -9.52 -40.71 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -4.79 Total: 2.78 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -4.83 Total: -16.77 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.30 Total: -48.52 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.19 -9.52 -40.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043561315.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.452 kcal (2) G-P(sol) polarization free energy of solvation -31.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds